Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4631

Experiment: m.b. Cobalt chloride 0.8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4629 and Echvi_4630 are separated by 119 nucleotidesEchvi_4630 and Echvi_4631 are separated by 70 nucleotidesEchvi_4631 and Echvi_4632 are separated by 285 nucleotidesEchvi_4632 and Echvi_4633 are separated by 127 nucleotides Echvi_4629: Echvi_4629 - Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor), at 5,539,231 to 5,539,575 _4629 Echvi_4630: Echvi_4630 - Fe2+/Zn2+ uptake regulation proteins, at 5,539,695 to 5,540,162 _4630 Echvi_4631: Echvi_4631 - (p)ppGpp synthetase, RelA/SpoT family, at 5,540,233 to 5,542,455 _4631 Echvi_4632: Echvi_4632 - tRNA, at 5,542,741 to 5,542,825 _4632 Echvi_4633: Echvi_4633 - trigger factor, at 5,542,953 to 5,544,281 _4633 Position (kb) 5540 5541 5542 5543Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 5539.237 kb on + strandat 5539.296 kb on + strand, within Echvi_4629at 5539.315 kb on + strand, within Echvi_4629at 5539.315 kb on + strand, within Echvi_4629at 5539.316 kb on - strand, within Echvi_4629at 5539.341 kb on - strand, within Echvi_4629at 5539.341 kb on - strand, within Echvi_4629at 5539.354 kb on + strand, within Echvi_4629at 5539.371 kb on + strand, within Echvi_4629at 5539.411 kb on - strand, within Echvi_4629at 5539.412 kb on + strand, within Echvi_4629at 5539.412 kb on + strand, within Echvi_4629at 5539.412 kb on + strand, within Echvi_4629at 5539.413 kb on - strand, within Echvi_4629at 5539.413 kb on - strand, within Echvi_4629at 5539.413 kb on - strand, within Echvi_4629at 5539.413 kb on - strand, within Echvi_4629at 5539.435 kb on - strand, within Echvi_4629at 5539.437 kb on + strand, within Echvi_4629at 5539.437 kb on + strand, within Echvi_4629at 5539.438 kb on - strand, within Echvi_4629at 5539.459 kb on + strand, within Echvi_4629at 5539.563 kb on - strandat 5539.563 kb on - strandat 5539.563 kb on - strandat 5539.575 kb on + strandat 5539.575 kb on + strandat 5540.190 kb on + strandat 5540.219 kb on - strandat 5540.230 kb on - strandat 5540.230 kb on - strandat 5540.319 kb on - strandat 5540.359 kb on + strandat 5540.637 kb on + strand, within Echvi_4631at 5541.093 kb on + strand, within Echvi_4631at 5541.093 kb on + strand, within Echvi_4631at 5541.094 kb on - strand, within Echvi_4631at 5541.381 kb on - strand, within Echvi_4631at 5541.448 kb on + strand, within Echvi_4631at 5541.477 kb on + strand, within Echvi_4631at 5541.478 kb on - strand, within Echvi_4631at 5541.478 kb on - strand, within Echvi_4631at 5541.480 kb on + strand, within Echvi_4631at 5541.480 kb on + strand, within Echvi_4631at 5541.480 kb on + strand, within Echvi_4631at 5541.480 kb on + strand, within Echvi_4631at 5541.480 kb on + strand, within Echvi_4631at 5541.481 kb on - strand, within Echvi_4631at 5541.481 kb on - strand, within Echvi_4631at 5541.481 kb on - strand, within Echvi_4631at 5541.513 kb on + strand, within Echvi_4631at 5541.573 kb on - strand, within Echvi_4631at 5541.573 kb on - strand, within Echvi_4631at 5541.574 kb on + strand, within Echvi_4631at 5541.574 kb on + strand, within Echvi_4631at 5541.575 kb on - strand, within Echvi_4631at 5541.575 kb on - strand, within Echvi_4631at 5541.575 kb on - strand, within Echvi_4631at 5541.618 kb on + strand, within Echvi_4631at 5541.645 kb on - strand, within Echvi_4631at 5541.662 kb on - strand, within Echvi_4631at 5541.769 kb on - strand, within Echvi_4631at 5541.792 kb on + strand, within Echvi_4631at 5541.792 kb on + strand, within Echvi_4631at 5541.817 kb on - strand, within Echvi_4631at 5541.833 kb on + strand, within Echvi_4631at 5541.888 kb on + strand, within Echvi_4631at 5541.888 kb on + strand, within Echvi_4631at 5541.888 kb on + strand, within Echvi_4631at 5541.890 kb on + strand, within Echvi_4631at 5541.890 kb on + strand, within Echvi_4631at 5541.891 kb on - strand, within Echvi_4631at 5541.891 kb on - strand, within Echvi_4631at 5541.920 kb on + strand, within Echvi_4631at 5541.926 kb on + strand, within Echvi_4631at 5541.926 kb on + strand, within Echvi_4631at 5541.926 kb on + strand, within Echvi_4631at 5541.926 kb on + strand, within Echvi_4631at 5541.927 kb on - strand, within Echvi_4631at 5541.927 kb on - strand, within Echvi_4631at 5541.958 kb on - strand, within Echvi_4631at 5542.182 kb on + strand, within Echvi_4631at 5542.224 kb on + strand, within Echvi_4631at 5542.224 kb on + strand, within Echvi_4631at 5542.227 kb on + strand, within Echvi_4631at 5542.228 kb on - strandat 5542.277 kb on + strandat 5542.277 kb on + strandat 5542.281 kb on + strandat 5542.281 kb on + strandat 5542.283 kb on + strandat 5542.283 kb on + strandat 5542.284 kb on - strandat 5542.432 kb on + strandat 5542.432 kb on + strandat 5542.444 kb on + strandat 5542.455 kb on + strandat 5542.455 kb on + strandat 5542.461 kb on + strandat 5542.461 kb on + strandat 5542.462 kb on - strandat 5542.462 kb on - strandat 5542.462 kb on - strandat 5542.464 kb on + strandat 5542.465 kb on - strandat 5542.504 kb on - strandat 5542.507 kb on + strandat 5542.507 kb on + strandat 5542.507 kb on + strandat 5542.508 kb on - strandat 5542.825 kb on - strandat 5542.874 kb on + strandat 5542.875 kb on - strandat 5542.966 kb on + strandat 5543.022 kb on + strandat 5543.022 kb on + strandat 5543.056 kb on - strandat 5543.184 kb on + strand, within Echvi_4633at 5543.185 kb on - strand, within Echvi_4633at 5543.186 kb on + strand, within Echvi_4633at 5543.187 kb on - strand, within Echvi_4633at 5543.249 kb on + strand, within Echvi_4633at 5543.250 kb on - strand, within Echvi_4633at 5543.288 kb on + strand, within Echvi_4633at 5543.288 kb on + strand, within Echvi_4633at 5543.289 kb on - strand, within Echvi_4633at 5543.293 kb on + strand, within Echvi_4633at 5543.294 kb on - strand, within Echvi_4633at 5543.399 kb on - strand, within Echvi_4633at 5543.434 kb on + strand, within Echvi_4633at 5543.435 kb on - strand, within Echvi_4633at 5543.435 kb on - strand, within Echvi_4633

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.8 mM
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5,539,237 + -0.3
5,539,296 + Echvi_4629 0.19 +0.0
5,539,315 + Echvi_4629 0.24 -0.6
5,539,315 + Echvi_4629 0.24 -0.1
5,539,316 - Echvi_4629 0.25 -0.0
5,539,341 - Echvi_4629 0.32 +0.4
5,539,341 - Echvi_4629 0.32 -0.3
5,539,354 + Echvi_4629 0.36 -0.1
5,539,371 + Echvi_4629 0.41 -0.8
5,539,411 - Echvi_4629 0.52 -1.4
5,539,412 + Echvi_4629 0.52 -0.3
5,539,412 + Echvi_4629 0.52 +0.0
5,539,412 + Echvi_4629 0.52 -0.5
5,539,413 - Echvi_4629 0.53 +0.3
5,539,413 - Echvi_4629 0.53 -1.0
5,539,413 - Echvi_4629 0.53 +0.8
5,539,413 - Echvi_4629 0.53 +0.5
5,539,435 - Echvi_4629 0.59 -0.1
5,539,437 + Echvi_4629 0.60 -0.5
5,539,437 + Echvi_4629 0.60 +0.2
5,539,438 - Echvi_4629 0.60 -1.3
5,539,459 + Echvi_4629 0.66 -2.4
5,539,563 - -0.8
5,539,563 - -0.9
5,539,563 - +0.7
5,539,575 + +0.3
5,539,575 + -0.5
5,540,190 + -2.4
5,540,219 - +0.6
5,540,230 - +0.4
5,540,230 - -0.9
5,540,319 - +0.5
5,540,359 + +1.3
5,540,637 + Echvi_4631 0.18 -1.4
5,541,093 + Echvi_4631 0.39 +0.6
5,541,093 + Echvi_4631 0.39 -0.9
5,541,094 - Echvi_4631 0.39 -0.3
5,541,381 - Echvi_4631 0.52 +0.2
5,541,448 + Echvi_4631 0.55 -0.5
5,541,477 + Echvi_4631 0.56 -2.1
5,541,478 - Echvi_4631 0.56 +0.3
5,541,478 - Echvi_4631 0.56 -0.6
5,541,480 + Echvi_4631 0.56 -1.2
5,541,480 + Echvi_4631 0.56 -1.4
5,541,480 + Echvi_4631 0.56 +0.4
5,541,480 + Echvi_4631 0.56 -1.2
5,541,480 + Echvi_4631 0.56 -0.1
5,541,481 - Echvi_4631 0.56 -1.3
5,541,481 - Echvi_4631 0.56 -1.3
5,541,481 - Echvi_4631 0.56 -0.9
5,541,513 + Echvi_4631 0.58 -0.8
5,541,573 - Echvi_4631 0.60 -0.7
5,541,573 - Echvi_4631 0.60 -2.4
5,541,574 + Echvi_4631 0.60 -1.0
5,541,574 + Echvi_4631 0.60 -1.1
5,541,575 - Echvi_4631 0.60 -0.3
5,541,575 - Echvi_4631 0.60 -2.1
5,541,575 - Echvi_4631 0.60 -1.6
5,541,618 + Echvi_4631 0.62 -0.5
5,541,645 - Echvi_4631 0.64 -0.6
5,541,662 - Echvi_4631 0.64 -0.8
5,541,769 - Echvi_4631 0.69 +0.6
5,541,792 + Echvi_4631 0.70 -0.6
5,541,792 + Echvi_4631 0.70 +0.1
5,541,817 - Echvi_4631 0.71 +1.7
5,541,833 + Echvi_4631 0.72 -2.0
5,541,888 + Echvi_4631 0.74 -2.5
5,541,888 + Echvi_4631 0.74 +0.1
5,541,888 + Echvi_4631 0.74 -0.9
5,541,890 + Echvi_4631 0.75 -1.5
5,541,890 + Echvi_4631 0.75 +0.9
5,541,891 - Echvi_4631 0.75 +0.6
5,541,891 - Echvi_4631 0.75 -1.2
5,541,920 + Echvi_4631 0.76 -1.8
5,541,926 + Echvi_4631 0.76 -0.8
5,541,926 + Echvi_4631 0.76 -2.1
5,541,926 + Echvi_4631 0.76 -1.0
5,541,926 + Echvi_4631 0.76 +0.3
5,541,927 - Echvi_4631 0.76 -1.3
5,541,927 - Echvi_4631 0.76 -0.8
5,541,958 - Echvi_4631 0.78 -0.6
5,542,182 + Echvi_4631 0.88 -0.5
5,542,224 + Echvi_4631 0.90 -2.0
5,542,224 + Echvi_4631 0.90 +0.6
5,542,227 + Echvi_4631 0.90 -1.3
5,542,228 - +0.7
5,542,277 + -0.5
5,542,277 + -1.6
5,542,281 + -0.7
5,542,281 + -1.4
5,542,283 + +0.1
5,542,283 + +0.4
5,542,284 - +0.1
5,542,432 + -0.3
5,542,432 + -0.1
5,542,444 + -1.3
5,542,455 + -0.6
5,542,455 + +1.4
5,542,461 + +0.3
5,542,461 + +0.4
5,542,462 - +3.9
5,542,462 - -0.9
5,542,462 - -0.4
5,542,464 + -0.4
5,542,465 - -1.2
5,542,504 - +1.9
5,542,507 + -0.0
5,542,507 + +0.5
5,542,507 + -0.1
5,542,508 - +1.4
5,542,825 - -4.3
5,542,874 + -1.0
5,542,875 - +0.9
5,542,966 + -2.0
5,543,022 + +1.4
5,543,022 + -0.1
5,543,056 - -1.2
5,543,184 + Echvi_4633 0.17 -0.1
5,543,185 - Echvi_4633 0.17 -2.7
5,543,186 + Echvi_4633 0.18 -1.3
5,543,187 - Echvi_4633 0.18 +0.5
5,543,249 + Echvi_4633 0.22 -0.4
5,543,250 - Echvi_4633 0.22 -0.4
5,543,288 + Echvi_4633 0.25 -1.8
5,543,288 + Echvi_4633 0.25 +1.0
5,543,289 - Echvi_4633 0.25 -0.1
5,543,293 + Echvi_4633 0.26 +0.0
5,543,294 - Echvi_4633 0.26 +0.7
5,543,399 - Echvi_4633 0.34 -0.6
5,543,434 + Echvi_4633 0.36 -0.6
5,543,435 - Echvi_4633 0.36 +0.0
5,543,435 - Echvi_4633 0.36 +0.3

Or see this region's nucleotide sequence