Experiment: m.b. Cobalt chloride 0.8 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4413 and Echvi_4414 are separated by 333 nucleotides Echvi_4414 and Echvi_4415 are separated by 231 nucleotides Echvi_4415 and Echvi_4416 are separated by 62 nucleotides
Echvi_4413: Echvi_4413 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase, at 5,277,343 to 5,279,079
_4413
Echvi_4414: Echvi_4414 - hypothetical protein, at 5,279,413 to 5,279,541
_4414
Echvi_4415: Echvi_4415 - Transcription antiterminator, at 5,279,773 to 5,280,276
_4415
Echvi_4416: Echvi_4416 - hypothetical protein, at 5,280,339 to 5,280,710
_4416
Position (kb)
5279
5280 Strain fitness (log2 ratio)
-2
-1
0
1 at 5278.444 kb on - strand, within Echvi_4413 at 5278.534 kb on + strand, within Echvi_4413 at 5278.545 kb on + strand, within Echvi_4413 at 5278.545 kb on + strand, within Echvi_4413 at 5278.546 kb on - strand, within Echvi_4413 at 5278.546 kb on - strand, within Echvi_4413 at 5278.649 kb on + strand, within Echvi_4413 at 5278.806 kb on - strand, within Echvi_4413 at 5278.832 kb on + strand, within Echvi_4413 at 5278.833 kb on - strand, within Echvi_4413 at 5278.833 kb on - strand, within Echvi_4413 at 5278.940 kb on + strand at 5278.941 kb on - strand at 5278.992 kb on + strand at 5279.047 kb on + strand at 5279.076 kb on - strand at 5279.080 kb on - strand at 5279.110 kb on + strand at 5279.260 kb on + strand at 5279.260 kb on + strand at 5279.271 kb on + strand at 5279.277 kb on - strand at 5279.434 kb on + strand, within Echvi_4414 at 5279.552 kb on - strand at 5279.706 kb on + strand at 5279.736 kb on + strand at 5279.737 kb on - strand at 5279.737 kb on - strand at 5279.739 kb on - strand at 5279.739 kb on - strand at 5279.795 kb on - strand at 5279.803 kb on + strand at 5279.803 kb on + strand at 5279.803 kb on + strand at 5279.803 kb on + strand at 5279.804 kb on - strand at 5279.804 kb on - strand at 5279.804 kb on - strand at 5279.866 kb on + strand, within Echvi_4415 at 5279.888 kb on + strand, within Echvi_4415 at 5279.941 kb on + strand, within Echvi_4415 at 5279.943 kb on + strand, within Echvi_4415 at 5280.112 kb on - strand, within Echvi_4415 at 5280.112 kb on - strand, within Echvi_4415 at 5280.152 kb on + strand, within Echvi_4415 at 5280.201 kb on + strand, within Echvi_4415 at 5280.243 kb on + strand at 5280.307 kb on - strand at 5280.309 kb on - strand at 5280.309 kb on - strand at 5280.309 kb on - strand at 5280.352 kb on + strand at 5280.355 kb on + strand at 5280.355 kb on + strand at 5280.355 kb on + strand at 5280.529 kb on + strand, within Echvi_4416 at 5280.529 kb on + strand, within Echvi_4416
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.8 mM remove 5,278,444 - Echvi_4413 0.63 -1.7 5,278,534 + Echvi_4413 0.69 -0.4 5,278,545 + Echvi_4413 0.69 +1.1 5,278,545 + Echvi_4413 0.69 +0.9 5,278,546 - Echvi_4413 0.69 -0.6 5,278,546 - Echvi_4413 0.69 -0.5 5,278,649 + Echvi_4413 0.75 +0.1 5,278,806 - Echvi_4413 0.84 -1.2 5,278,832 + Echvi_4413 0.86 -0.0 5,278,833 - Echvi_4413 0.86 -1.4 5,278,833 - Echvi_4413 0.86 -0.8 5,278,940 + -0.5 5,278,941 - +0.0 5,278,992 + -0.0 5,279,047 + +0.1 5,279,076 - +0.2 5,279,080 - +0.6 5,279,110 + -0.4 5,279,260 + -1.5 5,279,260 + -0.3 5,279,271 + -0.7 5,279,277 - -0.6 5,279,434 + Echvi_4414 0.16 -2.6 5,279,552 - -0.2 5,279,706 + -1.1 5,279,736 + +0.7 5,279,737 - -1.6 5,279,737 - +0.2 5,279,739 - -0.0 5,279,739 - -0.6 5,279,795 - -0.4 5,279,803 + +0.5 5,279,803 + +1.1 5,279,803 + -0.5 5,279,803 + +0.4 5,279,804 - -0.8 5,279,804 - +0.3 5,279,804 - -0.4 5,279,866 + Echvi_4415 0.18 +0.4 5,279,888 + Echvi_4415 0.23 +0.1 5,279,941 + Echvi_4415 0.33 +0.3 5,279,943 + Echvi_4415 0.34 +1.0 5,280,112 - Echvi_4415 0.67 -1.2 5,280,112 - Echvi_4415 0.67 -0.2 5,280,152 + Echvi_4415 0.75 +0.7 5,280,201 + Echvi_4415 0.85 +0.3 5,280,243 + +0.7 5,280,307 - +0.5 5,280,309 - -0.1 5,280,309 - -1.2 5,280,309 - +1.1 5,280,352 + +0.7 5,280,355 + -0.6 5,280,355 + -0.3 5,280,355 + -0.5 5,280,529 + Echvi_4416 0.51 +0.1 5,280,529 + Echvi_4416 0.51 -0.2
Or see this region's nucleotide sequence