Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4414

Experiment: m.b. Cobalt chloride 0.8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4413 and Echvi_4414 are separated by 333 nucleotidesEchvi_4414 and Echvi_4415 are separated by 231 nucleotidesEchvi_4415 and Echvi_4416 are separated by 62 nucleotides Echvi_4413: Echvi_4413 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase, at 5,277,343 to 5,279,079 _4413 Echvi_4414: Echvi_4414 - hypothetical protein, at 5,279,413 to 5,279,541 _4414 Echvi_4415: Echvi_4415 - Transcription antiterminator, at 5,279,773 to 5,280,276 _4415 Echvi_4416: Echvi_4416 - hypothetical protein, at 5,280,339 to 5,280,710 _4416 Position (kb) 5279 5280Strain fitness (log2 ratio) -2 -1 0 1at 5278.444 kb on - strand, within Echvi_4413at 5278.534 kb on + strand, within Echvi_4413at 5278.545 kb on + strand, within Echvi_4413at 5278.545 kb on + strand, within Echvi_4413at 5278.546 kb on - strand, within Echvi_4413at 5278.546 kb on - strand, within Echvi_4413at 5278.649 kb on + strand, within Echvi_4413at 5278.806 kb on - strand, within Echvi_4413at 5278.832 kb on + strand, within Echvi_4413at 5278.833 kb on - strand, within Echvi_4413at 5278.833 kb on - strand, within Echvi_4413at 5278.940 kb on + strandat 5278.941 kb on - strandat 5278.992 kb on + strandat 5279.047 kb on + strandat 5279.076 kb on - strandat 5279.080 kb on - strandat 5279.110 kb on + strandat 5279.260 kb on + strandat 5279.260 kb on + strandat 5279.271 kb on + strandat 5279.277 kb on - strandat 5279.434 kb on + strand, within Echvi_4414at 5279.552 kb on - strandat 5279.706 kb on + strandat 5279.736 kb on + strandat 5279.737 kb on - strandat 5279.737 kb on - strandat 5279.739 kb on - strandat 5279.739 kb on - strandat 5279.795 kb on - strandat 5279.803 kb on + strandat 5279.803 kb on + strandat 5279.803 kb on + strandat 5279.803 kb on + strandat 5279.804 kb on - strandat 5279.804 kb on - strandat 5279.804 kb on - strandat 5279.866 kb on + strand, within Echvi_4415at 5279.888 kb on + strand, within Echvi_4415at 5279.941 kb on + strand, within Echvi_4415at 5279.943 kb on + strand, within Echvi_4415at 5280.112 kb on - strand, within Echvi_4415at 5280.112 kb on - strand, within Echvi_4415at 5280.152 kb on + strand, within Echvi_4415at 5280.201 kb on + strand, within Echvi_4415at 5280.243 kb on + strandat 5280.307 kb on - strandat 5280.309 kb on - strandat 5280.309 kb on - strandat 5280.309 kb on - strandat 5280.352 kb on + strandat 5280.355 kb on + strandat 5280.355 kb on + strandat 5280.355 kb on + strandat 5280.529 kb on + strand, within Echvi_4416at 5280.529 kb on + strand, within Echvi_4416

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.8 mM
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5,278,444 - Echvi_4413 0.63 -1.7
5,278,534 + Echvi_4413 0.69 -0.4
5,278,545 + Echvi_4413 0.69 +1.1
5,278,545 + Echvi_4413 0.69 +0.9
5,278,546 - Echvi_4413 0.69 -0.6
5,278,546 - Echvi_4413 0.69 -0.5
5,278,649 + Echvi_4413 0.75 +0.1
5,278,806 - Echvi_4413 0.84 -1.2
5,278,832 + Echvi_4413 0.86 -0.0
5,278,833 - Echvi_4413 0.86 -1.4
5,278,833 - Echvi_4413 0.86 -0.8
5,278,940 + -0.5
5,278,941 - +0.0
5,278,992 + -0.0
5,279,047 + +0.1
5,279,076 - +0.2
5,279,080 - +0.6
5,279,110 + -0.4
5,279,260 + -1.5
5,279,260 + -0.3
5,279,271 + -0.7
5,279,277 - -0.6
5,279,434 + Echvi_4414 0.16 -2.6
5,279,552 - -0.2
5,279,706 + -1.1
5,279,736 + +0.7
5,279,737 - -1.6
5,279,737 - +0.2
5,279,739 - -0.0
5,279,739 - -0.6
5,279,795 - -0.4
5,279,803 + +0.5
5,279,803 + +1.1
5,279,803 + -0.5
5,279,803 + +0.4
5,279,804 - -0.8
5,279,804 - +0.3
5,279,804 - -0.4
5,279,866 + Echvi_4415 0.18 +0.4
5,279,888 + Echvi_4415 0.23 +0.1
5,279,941 + Echvi_4415 0.33 +0.3
5,279,943 + Echvi_4415 0.34 +1.0
5,280,112 - Echvi_4415 0.67 -1.2
5,280,112 - Echvi_4415 0.67 -0.2
5,280,152 + Echvi_4415 0.75 +0.7
5,280,201 + Echvi_4415 0.85 +0.3
5,280,243 + +0.7
5,280,307 - +0.5
5,280,309 - -0.1
5,280,309 - -1.2
5,280,309 - +1.1
5,280,352 + +0.7
5,280,355 + -0.6
5,280,355 + -0.3
5,280,355 + -0.5
5,280,529 + Echvi_4416 0.51 +0.1
5,280,529 + Echvi_4416 0.51 -0.2

Or see this region's nucleotide sequence