Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4278

Experiment: m.b. Cobalt chloride 0.8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4275 and Echvi_4276 are separated by 24 nucleotidesEchvi_4276 and Echvi_4277 overlap by 8 nucleotidesEchvi_4277 and Echvi_4278 are separated by 21 nucleotidesEchvi_4278 and Echvi_4279 are separated by 18 nucleotidesEchvi_4279 and Echvi_4280 are separated by 5 nucleotidesEchvi_4280 and Echvi_4281 are separated by 5 nucleotides Echvi_4275: Echvi_4275 - hypothetical protein, at 5,124,473 to 5,124,901 _4275 Echvi_4276: Echvi_4276 - hypothetical protein, at 5,124,926 to 5,125,168 _4276 Echvi_4277: Echvi_4277 - Cupin domain., at 5,125,161 to 5,125,565 _4277 Echvi_4278: Echvi_4278 - hypothetical protein, at 5,125,587 to 5,125,964 _4278 Echvi_4279: Echvi_4279 - hypothetical protein, at 5,125,983 to 5,126,195 _4279 Echvi_4280: Echvi_4280 - hypothetical protein, at 5,126,201 to 5,126,581 _4280 Echvi_4281: Echvi_4281 - Uncharacterized protein conserved in bacteria, at 5,126,587 to 5,127,549 _4281 Position (kb) 5125 5126Strain fitness (log2 ratio) -2 -1 0 1at 5124.641 kb on + strand, within Echvi_4275at 5124.648 kb on + strand, within Echvi_4275at 5124.649 kb on - strand, within Echvi_4275at 5124.661 kb on + strand, within Echvi_4275at 5124.675 kb on + strandat 5124.797 kb on + strand, within Echvi_4275at 5124.822 kb on + strand, within Echvi_4275at 5124.900 kb on - strandat 5124.924 kb on + strandat 5124.925 kb on - strandat 5124.925 kb on - strandat 5124.925 kb on - strandat 5124.927 kb on + strandat 5124.932 kb on + strandat 5124.948 kb on - strandat 5124.961 kb on + strand, within Echvi_4276at 5124.970 kb on + strand, within Echvi_4276at 5124.983 kb on + strand, within Echvi_4276at 5124.983 kb on + strand, within Echvi_4276at 5124.991 kb on + strand, within Echvi_4276at 5124.991 kb on + strand, within Echvi_4276at 5124.991 kb on + strand, within Echvi_4276at 5124.992 kb on - strand, within Echvi_4276at 5124.992 kb on - strand, within Echvi_4276at 5125.021 kb on + strand, within Echvi_4276at 5125.049 kb on - strand, within Echvi_4276at 5125.194 kb on + strandat 5125.195 kb on - strandat 5125.348 kb on - strand, within Echvi_4277at 5125.348 kb on - strand, within Echvi_4277at 5125.350 kb on - strand, within Echvi_4277at 5125.355 kb on + strand, within Echvi_4277at 5125.356 kb on - strand, within Echvi_4277at 5125.356 kb on - strand, within Echvi_4277at 5125.356 kb on - strand, within Echvi_4277at 5125.356 kb on - strand, within Echvi_4277at 5125.356 kb on - strand, within Echvi_4277at 5125.356 kb on - strand, within Echvi_4277at 5125.358 kb on + strand, within Echvi_4277at 5125.358 kb on + strand, within Echvi_4277at 5125.358 kb on + strand, within Echvi_4277at 5125.359 kb on - strand, within Echvi_4277at 5125.367 kb on + strand, within Echvi_4277at 5125.368 kb on - strand, within Echvi_4277at 5125.372 kb on + strand, within Echvi_4277at 5125.377 kb on + strand, within Echvi_4277at 5125.452 kb on - strand, within Echvi_4277at 5125.453 kb on + strand, within Echvi_4277at 5125.454 kb on - strand, within Echvi_4277at 5125.457 kb on + strand, within Echvi_4277at 5125.457 kb on + strand, within Echvi_4277at 5125.458 kb on - strand, within Echvi_4277at 5125.458 kb on - strand, within Echvi_4277at 5125.458 kb on - strand, within Echvi_4277at 5125.458 kb on - strand, within Echvi_4277at 5125.458 kb on - strand, within Echvi_4277at 5125.460 kb on + strand, within Echvi_4277at 5125.502 kb on + strand, within Echvi_4277at 5125.513 kb on + strand, within Echvi_4277at 5125.521 kb on - strand, within Echvi_4277at 5125.521 kb on - strand, within Echvi_4277at 5125.521 kb on - strand, within Echvi_4277at 5125.537 kb on - strandat 5125.569 kb on - strandat 5125.588 kb on + strandat 5125.588 kb on + strandat 5125.588 kb on + strandat 5125.588 kb on + strandat 5125.590 kb on + strandat 5125.590 kb on + strandat 5125.590 kb on + strandat 5125.590 kb on + strandat 5125.590 kb on + strandat 5125.590 kb on + strandat 5125.590 kb on + strandat 5125.590 kb on + strandat 5125.591 kb on - strandat 5125.591 kb on - strandat 5125.591 kb on - strandat 5125.596 kb on + strandat 5125.596 kb on + strandat 5125.597 kb on - strandat 5125.597 kb on - strandat 5125.597 kb on - strandat 5125.603 kb on + strandat 5125.603 kb on + strandat 5125.604 kb on - strandat 5125.669 kb on + strand, within Echvi_4278at 5125.695 kb on + strand, within Echvi_4278at 5125.763 kb on + strand, within Echvi_4278at 5125.780 kb on - strand, within Echvi_4278at 5125.940 kb on + strandat 5125.940 kb on + strandat 5125.953 kb on + strandat 5125.976 kb on + strandat 5125.976 kb on + strandat 5126.005 kb on + strand, within Echvi_4279at 5126.006 kb on - strand, within Echvi_4279at 5126.011 kb on + strand, within Echvi_4279at 5126.011 kb on + strand, within Echvi_4279at 5126.011 kb on + strand, within Echvi_4279at 5126.011 kb on + strand, within Echvi_4279at 5126.011 kb on + strand, within Echvi_4279at 5126.011 kb on + strand, within Echvi_4279at 5126.011 kb on + strand, within Echvi_4279at 5126.012 kb on - strand, within Echvi_4279at 5126.012 kb on - strand, within Echvi_4279at 5126.012 kb on - strand, within Echvi_4279at 5126.012 kb on - strand, within Echvi_4279at 5126.012 kb on - strand, within Echvi_4279at 5126.012 kb on - strand, within Echvi_4279at 5126.089 kb on - strand, within Echvi_4279at 5126.166 kb on + strand, within Echvi_4279at 5126.167 kb on - strand, within Echvi_4279at 5126.167 kb on - strand, within Echvi_4279at 5126.179 kb on + strandat 5126.195 kb on + strandat 5126.196 kb on - strandat 5126.202 kb on + strandat 5126.202 kb on + strandat 5126.235 kb on + strandat 5126.235 kb on + strandat 5126.235 kb on + strandat 5126.236 kb on - strandat 5126.239 kb on + strand, within Echvi_4280at 5126.239 kb on + strand, within Echvi_4280at 5126.239 kb on + strand, within Echvi_4280at 5126.239 kb on + strand, within Echvi_4280at 5126.239 kb on + strand, within Echvi_4280at 5126.241 kb on + strand, within Echvi_4280at 5126.241 kb on + strand, within Echvi_4280at 5126.264 kb on + strand, within Echvi_4280at 5126.285 kb on - strand, within Echvi_4280at 5126.294 kb on + strand, within Echvi_4280at 5126.295 kb on - strand, within Echvi_4280at 5126.318 kb on + strand, within Echvi_4280at 5126.414 kb on + strand, within Echvi_4280at 5126.429 kb on + strand, within Echvi_4280at 5126.429 kb on + strand, within Echvi_4280at 5126.434 kb on + strand, within Echvi_4280at 5126.434 kb on + strand, within Echvi_4280at 5126.445 kb on + strand, within Echvi_4280at 5126.484 kb on + strand, within Echvi_4280at 5126.485 kb on - strand, within Echvi_4280at 5126.485 kb on - strand, within Echvi_4280at 5126.569 kb on + strandat 5126.570 kb on - strandat 5126.571 kb on + strandat 5126.581 kb on + strandat 5126.589 kb on - strandat 5126.604 kb on + strandat 5126.604 kb on + strandat 5126.604 kb on + strandat 5126.634 kb on + strandat 5126.646 kb on - strandat 5126.648 kb on + strandat 5126.648 kb on + strandat 5126.649 kb on - strandat 5126.649 kb on - strandat 5126.649 kb on - strandat 5126.766 kb on + strand, within Echvi_4281at 5126.767 kb on - strand, within Echvi_4281at 5126.767 kb on - strand, within Echvi_4281at 5126.776 kb on + strand, within Echvi_4281at 5126.776 kb on + strand, within Echvi_4281at 5126.892 kb on + strand, within Echvi_4281at 5126.892 kb on + strand, within Echvi_4281at 5126.892 kb on + strand, within Echvi_4281at 5126.893 kb on - strand, within Echvi_4281at 5126.905 kb on + strand, within Echvi_4281at 5126.922 kb on + strand, within Echvi_4281

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.8 mM
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5,124,641 + Echvi_4275 0.39 -0.7
5,124,648 + Echvi_4275 0.41 +0.3
5,124,649 - Echvi_4275 0.41 +0.6
5,124,661 + Echvi_4275 0.44 +0.4
5,124,675 + +1.1
5,124,797 + Echvi_4275 0.76 -0.7
5,124,822 + Echvi_4275 0.81 -0.2
5,124,900 - -0.6
5,124,924 + -0.4
5,124,925 - -0.3
5,124,925 - +0.6
5,124,925 - +0.3
5,124,927 + -0.4
5,124,932 + -0.3
5,124,948 - -1.1
5,124,961 + Echvi_4276 0.14 +0.0
5,124,970 + Echvi_4276 0.18 +0.2
5,124,983 + Echvi_4276 0.23 -1.4
5,124,983 + Echvi_4276 0.23 -0.7
5,124,991 + Echvi_4276 0.27 +0.2
5,124,991 + Echvi_4276 0.27 -0.0
5,124,991 + Echvi_4276 0.27 -1.0
5,124,992 - Echvi_4276 0.27 -0.3
5,124,992 - Echvi_4276 0.27 -0.1
5,125,021 + Echvi_4276 0.39 -0.3
5,125,049 - Echvi_4276 0.51 +0.7
5,125,194 + -0.8
5,125,195 - +0.7
5,125,348 - Echvi_4277 0.46 +0.1
5,125,348 - Echvi_4277 0.46 -0.5
5,125,350 - Echvi_4277 0.47 -0.7
5,125,355 + Echvi_4277 0.48 +0.8
5,125,356 - Echvi_4277 0.48 -1.1
5,125,356 - Echvi_4277 0.48 -0.6
5,125,356 - Echvi_4277 0.48 +0.4
5,125,356 - Echvi_4277 0.48 +1.3
5,125,356 - Echvi_4277 0.48 -0.4
5,125,356 - Echvi_4277 0.48 -0.1
5,125,358 + Echvi_4277 0.49 -0.1
5,125,358 + Echvi_4277 0.49 +0.2
5,125,358 + Echvi_4277 0.49 -0.5
5,125,359 - Echvi_4277 0.49 -0.9
5,125,367 + Echvi_4277 0.51 +0.9
5,125,368 - Echvi_4277 0.51 +1.0
5,125,372 + Echvi_4277 0.52 +0.1
5,125,377 + Echvi_4277 0.53 -0.2
5,125,452 - Echvi_4277 0.72 -0.3
5,125,453 + Echvi_4277 0.72 -0.1
5,125,454 - Echvi_4277 0.72 -0.9
5,125,457 + Echvi_4277 0.73 +0.4
5,125,457 + Echvi_4277 0.73 +0.3
5,125,458 - Echvi_4277 0.73 +1.0
5,125,458 - Echvi_4277 0.73 +0.3
5,125,458 - Echvi_4277 0.73 +0.9
5,125,458 - Echvi_4277 0.73 -0.5
5,125,458 - Echvi_4277 0.73 +0.0
5,125,460 + Echvi_4277 0.74 +0.6
5,125,502 + Echvi_4277 0.84 +0.3
5,125,513 + Echvi_4277 0.87 -0.3
5,125,521 - Echvi_4277 0.89 -1.9
5,125,521 - Echvi_4277 0.89 +0.1
5,125,521 - Echvi_4277 0.89 -0.5
5,125,537 - -0.8
5,125,569 - -0.6
5,125,588 + -0.1
5,125,588 + -1.4
5,125,588 + -0.1
5,125,588 + +0.7
5,125,590 + +0.2
5,125,590 + +0.2
5,125,590 + +0.6
5,125,590 + -0.3
5,125,590 + -0.3
5,125,590 + -0.4
5,125,590 + +0.2
5,125,590 + -0.1
5,125,591 - -0.3
5,125,591 - -0.2
5,125,591 - -0.2
5,125,596 + -1.6
5,125,596 + +0.1
5,125,597 - -0.8
5,125,597 - -1.2
5,125,597 - -0.2
5,125,603 + -0.4
5,125,603 + +0.2
5,125,604 - +0.4
5,125,669 + Echvi_4278 0.22 -0.8
5,125,695 + Echvi_4278 0.29 +0.1
5,125,763 + Echvi_4278 0.47 -1.1
5,125,780 - Echvi_4278 0.51 -0.6
5,125,940 + +0.3
5,125,940 + -1.1
5,125,953 + +0.2
5,125,976 + +0.9
5,125,976 + -2.6
5,126,005 + Echvi_4279 0.10 -0.2
5,126,006 - Echvi_4279 0.11 -1.7
5,126,011 + Echvi_4279 0.13 -0.5
5,126,011 + Echvi_4279 0.13 +0.2
5,126,011 + Echvi_4279 0.13 -0.3
5,126,011 + Echvi_4279 0.13 -0.2
5,126,011 + Echvi_4279 0.13 -0.4
5,126,011 + Echvi_4279 0.13 +0.7
5,126,011 + Echvi_4279 0.13 -0.4
5,126,012 - Echvi_4279 0.14 -1.0
5,126,012 - Echvi_4279 0.14 -1.4
5,126,012 - Echvi_4279 0.14 +0.8
5,126,012 - Echvi_4279 0.14 -0.7
5,126,012 - Echvi_4279 0.14 +0.2
5,126,012 - Echvi_4279 0.14 -0.6
5,126,089 - Echvi_4279 0.50 -1.6
5,126,166 + Echvi_4279 0.86 +0.1
5,126,167 - Echvi_4279 0.86 +1.2
5,126,167 - Echvi_4279 0.86 +1.0
5,126,179 + -0.9
5,126,195 + -0.7
5,126,196 - +0.6
5,126,202 + -0.5
5,126,202 + +1.3
5,126,235 + -0.3
5,126,235 + -0.1
5,126,235 + -0.2
5,126,236 - -0.8
5,126,239 + Echvi_4280 0.10 -1.3
5,126,239 + Echvi_4280 0.10 -2.6
5,126,239 + Echvi_4280 0.10 +0.3
5,126,239 + Echvi_4280 0.10 +0.2
5,126,239 + Echvi_4280 0.10 -0.7
5,126,241 + Echvi_4280 0.10 -0.4
5,126,241 + Echvi_4280 0.10 -0.3
5,126,264 + Echvi_4280 0.17 +0.0
5,126,285 - Echvi_4280 0.22 -0.7
5,126,294 + Echvi_4280 0.24 -1.1
5,126,295 - Echvi_4280 0.25 -0.5
5,126,318 + Echvi_4280 0.31 -0.2
5,126,414 + Echvi_4280 0.56 +1.7
5,126,429 + Echvi_4280 0.60 -0.2
5,126,429 + Echvi_4280 0.60 -0.1
5,126,434 + Echvi_4280 0.61 -0.9
5,126,434 + Echvi_4280 0.61 +0.2
5,126,445 + Echvi_4280 0.64 +0.2
5,126,484 + Echvi_4280 0.74 +0.1
5,126,485 - Echvi_4280 0.75 -1.0
5,126,485 - Echvi_4280 0.75 +1.0
5,126,569 + -0.9
5,126,570 - -0.8
5,126,571 + -0.6
5,126,581 + -0.1
5,126,589 - -0.6
5,126,604 + +0.3
5,126,604 + -0.7
5,126,604 + -0.6
5,126,634 + +0.4
5,126,646 - -0.8
5,126,648 + +0.4
5,126,648 + -0.9
5,126,649 - -0.3
5,126,649 - +0.3
5,126,649 - +0.4
5,126,766 + Echvi_4281 0.19 +1.3
5,126,767 - Echvi_4281 0.19 +0.8
5,126,767 - Echvi_4281 0.19 +0.2
5,126,776 + Echvi_4281 0.20 -0.6
5,126,776 + Echvi_4281 0.20 -0.6
5,126,892 + Echvi_4281 0.32 -1.0
5,126,892 + Echvi_4281 0.32 -0.0
5,126,892 + Echvi_4281 0.32 +0.7
5,126,893 - Echvi_4281 0.32 -0.7
5,126,905 + Echvi_4281 0.33 -0.1
5,126,922 + Echvi_4281 0.35 +0.8

Or see this region's nucleotide sequence