Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4055

Experiment: m.b. Cobalt chloride 0.8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4053 and Echvi_4054 are separated by 128 nucleotidesEchvi_4054 and Echvi_4055 are separated by 12 nucleotidesEchvi_4055 and Echvi_4056 are separated by 2 nucleotides Echvi_4053: Echvi_4053 - Predicted transcriptional regulator, contains C-terminal CBS domains, at 4,861,564 to 4,862,025 _4053 Echvi_4054: Echvi_4054 - hypothetical protein, at 4,862,154 to 4,862,645 _4054 Echvi_4055: Echvi_4055 - Uncharacterized protein involved in copper resistance, at 4,862,658 to 4,863,401 _4055 Echvi_4056: Echvi_4056 - Asparaginase, at 4,863,404 to 4,864,387 _4056 Position (kb) 4862 4863 4864Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4861.664 kb on - strand, within Echvi_4053at 4862.046 kb on + strandat 4862.047 kb on - strandat 4862.263 kb on + strand, within Echvi_4054at 4862.288 kb on + strand, within Echvi_4054at 4862.319 kb on - strand, within Echvi_4054at 4862.319 kb on - strand, within Echvi_4054at 4862.319 kb on - strand, within Echvi_4054at 4862.342 kb on - strand, within Echvi_4054at 4862.350 kb on - strand, within Echvi_4054at 4862.350 kb on - strand, within Echvi_4054at 4862.416 kb on + strand, within Echvi_4054at 4862.416 kb on + strand, within Echvi_4054at 4862.420 kb on + strand, within Echvi_4054at 4862.420 kb on + strand, within Echvi_4054at 4862.421 kb on - strand, within Echvi_4054at 4862.455 kb on + strand, within Echvi_4054at 4862.553 kb on + strand, within Echvi_4054at 4862.554 kb on - strand, within Echvi_4054at 4862.554 kb on - strand, within Echvi_4054at 4862.592 kb on + strand, within Echvi_4054at 4862.600 kb on + strandat 4862.601 kb on - strandat 4862.621 kb on + strandat 4862.624 kb on - strandat 4862.637 kb on + strandat 4862.659 kb on + strandat 4862.879 kb on + strand, within Echvi_4055at 4862.897 kb on + strand, within Echvi_4055at 4862.898 kb on - strand, within Echvi_4055at 4862.957 kb on + strand, within Echvi_4055at 4863.151 kb on - strand, within Echvi_4055at 4863.262 kb on + strand, within Echvi_4055at 4863.396 kb on - strandat 4863.413 kb on - strandat 4863.459 kb on + strandat 4863.460 kb on - strandat 4863.463 kb on + strandat 4863.463 kb on + strandat 4863.463 kb on + strandat 4863.463 kb on + strandat 4863.464 kb on - strandat 4863.464 kb on - strandat 4863.505 kb on + strand, within Echvi_4056at 4863.621 kb on - strand, within Echvi_4056at 4863.702 kb on + strand, within Echvi_4056at 4863.703 kb on - strand, within Echvi_4056at 4863.751 kb on + strand, within Echvi_4056at 4863.766 kb on + strand, within Echvi_4056at 4863.772 kb on + strand, within Echvi_4056at 4863.773 kb on - strand, within Echvi_4056at 4863.773 kb on - strand, within Echvi_4056at 4863.809 kb on + strand, within Echvi_4056at 4863.810 kb on - strand, within Echvi_4056at 4863.810 kb on - strand, within Echvi_4056at 4863.818 kb on + strand, within Echvi_4056at 4863.819 kb on - strand, within Echvi_4056at 4863.824 kb on - strand, within Echvi_4056at 4863.853 kb on + strand, within Echvi_4056at 4863.855 kb on + strand, within Echvi_4056at 4863.865 kb on + strand, within Echvi_4056at 4863.866 kb on - strand, within Echvi_4056at 4863.883 kb on - strand, within Echvi_4056at 4863.920 kb on + strand, within Echvi_4056at 4863.920 kb on + strand, within Echvi_4056at 4863.952 kb on + strand, within Echvi_4056at 4864.043 kb on + strand, within Echvi_4056at 4864.044 kb on - strand, within Echvi_4056at 4864.075 kb on + strand, within Echvi_4056at 4864.075 kb on + strand, within Echvi_4056at 4864.075 kb on + strand, within Echvi_4056at 4864.096 kb on + strand, within Echvi_4056at 4864.097 kb on - strand, within Echvi_4056at 4864.176 kb on - strand, within Echvi_4056at 4864.228 kb on + strand, within Echvi_4056at 4864.228 kb on + strand, within Echvi_4056at 4864.308 kb on - strandat 4864.331 kb on + strandat 4864.379 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.8 mM
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4,861,664 - Echvi_4053 0.22 -1.9
4,862,046 + -0.8
4,862,047 - +0.0
4,862,263 + Echvi_4054 0.22 -0.1
4,862,288 + Echvi_4054 0.27 -0.4
4,862,319 - Echvi_4054 0.34 +0.6
4,862,319 - Echvi_4054 0.34 +1.0
4,862,319 - Echvi_4054 0.34 -0.5
4,862,342 - Echvi_4054 0.38 -1.9
4,862,350 - Echvi_4054 0.40 -0.1
4,862,350 - Echvi_4054 0.40 -0.2
4,862,416 + Echvi_4054 0.53 +0.7
4,862,416 + Echvi_4054 0.53 +0.1
4,862,420 + Echvi_4054 0.54 +0.1
4,862,420 + Echvi_4054 0.54 +0.1
4,862,421 - Echvi_4054 0.54 +0.0
4,862,455 + Echvi_4054 0.61 -1.8
4,862,553 + Echvi_4054 0.81 -1.4
4,862,554 - Echvi_4054 0.81 -0.4
4,862,554 - Echvi_4054 0.81 +1.2
4,862,592 + Echvi_4054 0.89 -0.1
4,862,600 + -0.5
4,862,601 - -1.3
4,862,621 + -0.7
4,862,624 - -0.4
4,862,637 + -0.1
4,862,659 + -0.4
4,862,879 + Echvi_4055 0.30 +0.2
4,862,897 + Echvi_4055 0.32 +0.4
4,862,898 - Echvi_4055 0.32 -0.9
4,862,957 + Echvi_4055 0.40 +0.7
4,863,151 - Echvi_4055 0.66 -1.7
4,863,262 + Echvi_4055 0.81 -2.3
4,863,396 - -0.7
4,863,413 - -0.3
4,863,459 + +0.1
4,863,460 - -0.2
4,863,463 + -0.9
4,863,463 + -2.8
4,863,463 + +2.0
4,863,463 + +0.2
4,863,464 - -1.2
4,863,464 - -1.0
4,863,505 + Echvi_4056 0.10 +1.1
4,863,621 - Echvi_4056 0.22 -0.0
4,863,702 + Echvi_4056 0.30 -0.7
4,863,703 - Echvi_4056 0.30 -1.5
4,863,751 + Echvi_4056 0.35 -0.2
4,863,766 + Echvi_4056 0.37 -2.1
4,863,772 + Echvi_4056 0.37 +0.4
4,863,773 - Echvi_4056 0.38 -0.2
4,863,773 - Echvi_4056 0.38 -0.3
4,863,809 + Echvi_4056 0.41 -0.5
4,863,810 - Echvi_4056 0.41 +0.3
4,863,810 - Echvi_4056 0.41 +1.4
4,863,818 + Echvi_4056 0.42 +0.5
4,863,819 - Echvi_4056 0.42 +0.1
4,863,824 - Echvi_4056 0.43 +0.4
4,863,853 + Echvi_4056 0.46 +0.7
4,863,855 + Echvi_4056 0.46 -0.2
4,863,865 + Echvi_4056 0.47 -0.7
4,863,866 - Echvi_4056 0.47 +1.2
4,863,883 - Echvi_4056 0.49 -1.1
4,863,920 + Echvi_4056 0.52 +0.1
4,863,920 + Echvi_4056 0.52 -0.9
4,863,952 + Echvi_4056 0.56 +0.1
4,864,043 + Echvi_4056 0.65 -0.2
4,864,044 - Echvi_4056 0.65 -1.9
4,864,075 + Echvi_4056 0.68 +0.4
4,864,075 + Echvi_4056 0.68 +1.5
4,864,075 + Echvi_4056 0.68 +0.8
4,864,096 + Echvi_4056 0.70 +0.6
4,864,097 - Echvi_4056 0.70 -1.2
4,864,176 - Echvi_4056 0.78 -0.9
4,864,228 + Echvi_4056 0.84 +1.2
4,864,228 + Echvi_4056 0.84 -0.4
4,864,308 - +0.6
4,864,331 + +0.2
4,864,379 - +0.2

Or see this region's nucleotide sequence