Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3557

Experiment: m.b. Cobalt chloride 0.8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3556 and Echvi_3557 are separated by 9 nucleotidesEchvi_3557 and Echvi_3558 are separated by 247 nucleotides Echvi_3556: Echvi_3556 - Phosphate-selective porin O and P., at 4,216,254 to 4,217,438 _3556 Echvi_3557: Echvi_3557 - Protein of unknown function (DUF2874)., at 4,217,448 to 4,217,894 _3557 Echvi_3558: Echvi_3558 - His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase., at 4,218,142 to 4,219,413 _3558 Position (kb) 4217 4218Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4216.471 kb on - strand, within Echvi_3556at 4216.510 kb on + strand, within Echvi_3556at 4216.511 kb on - strand, within Echvi_3556at 4216.551 kb on + strand, within Echvi_3556at 4216.598 kb on - strand, within Echvi_3556at 4216.598 kb on - strand, within Echvi_3556at 4216.598 kb on - strand, within Echvi_3556at 4216.598 kb on - strand, within Echvi_3556at 4216.664 kb on - strand, within Echvi_3556at 4216.664 kb on - strand, within Echvi_3556at 4216.664 kb on - strand, within Echvi_3556at 4216.699 kb on - strand, within Echvi_3556at 4216.714 kb on + strand, within Echvi_3556at 4216.714 kb on + strand, within Echvi_3556at 4216.715 kb on - strand, within Echvi_3556at 4216.715 kb on - strand, within Echvi_3556at 4216.746 kb on + strand, within Echvi_3556at 4216.747 kb on - strand, within Echvi_3556at 4216.772 kb on + strand, within Echvi_3556at 4216.792 kb on - strand, within Echvi_3556at 4216.823 kb on - strand, within Echvi_3556at 4216.843 kb on + strand, within Echvi_3556at 4216.843 kb on + strand, within Echvi_3556at 4216.843 kb on + strand, within Echvi_3556at 4216.844 kb on - strand, within Echvi_3556at 4216.884 kb on - strand, within Echvi_3556at 4216.884 kb on - strand, within Echvi_3556at 4216.885 kb on + strand, within Echvi_3556at 4216.886 kb on - strand, within Echvi_3556at 4216.894 kb on - strand, within Echvi_3556at 4216.939 kb on + strand, within Echvi_3556at 4216.940 kb on - strand, within Echvi_3556at 4217.015 kb on + strand, within Echvi_3556at 4217.015 kb on + strand, within Echvi_3556at 4217.015 kb on + strand, within Echvi_3556at 4217.104 kb on + strand, within Echvi_3556at 4217.105 kb on - strand, within Echvi_3556at 4217.105 kb on - strand, within Echvi_3556at 4217.105 kb on - strand, within Echvi_3556at 4217.105 kb on - strand, within Echvi_3556at 4217.125 kb on - strand, within Echvi_3556at 4217.136 kb on - strand, within Echvi_3556at 4217.170 kb on + strand, within Echvi_3556at 4217.278 kb on - strand, within Echvi_3556at 4217.296 kb on + strand, within Echvi_3556at 4217.297 kb on - strand, within Echvi_3556at 4217.308 kb on + strand, within Echvi_3556at 4217.385 kb on + strandat 4217.428 kb on - strandat 4217.450 kb on - strandat 4217.469 kb on + strandat 4217.546 kb on + strand, within Echvi_3557at 4217.546 kb on + strand, within Echvi_3557at 4217.649 kb on + strand, within Echvi_3557at 4217.728 kb on + strand, within Echvi_3557at 4217.853 kb on - strandat 4217.865 kb on + strandat 4217.866 kb on - strandat 4217.874 kb on + strandat 4217.878 kb on - strandat 4217.878 kb on - strandat 4217.914 kb on + strandat 4217.916 kb on + strandat 4217.930 kb on + strandat 4217.930 kb on + strandat 4217.933 kb on + strandat 4217.934 kb on - strandat 4218.083 kb on + strandat 4218.084 kb on - strandat 4218.087 kb on + strandat 4218.087 kb on + strandat 4218.088 kb on - strandat 4218.088 kb on - strandat 4218.119 kb on + strandat 4218.143 kb on + strandat 4218.144 kb on - strandat 4218.144 kb on - strandat 4218.184 kb on - strandat 4218.184 kb on - strandat 4218.186 kb on - strandat 4218.191 kb on + strandat 4218.192 kb on - strandat 4218.208 kb on - strandat 4218.252 kb on + strandat 4218.340 kb on + strand, within Echvi_3558at 4218.341 kb on - strand, within Echvi_3558at 4218.470 kb on - strand, within Echvi_3558at 4218.470 kb on - strand, within Echvi_3558at 4218.616 kb on + strand, within Echvi_3558at 4218.617 kb on - strand, within Echvi_3558at 4218.647 kb on - strand, within Echvi_3558at 4218.647 kb on - strand, within Echvi_3558at 4218.647 kb on - strand, within Echvi_3558at 4218.711 kb on + strand, within Echvi_3558at 4218.711 kb on + strand, within Echvi_3558at 4218.712 kb on - strand, within Echvi_3558at 4218.712 kb on - strand, within Echvi_3558at 4218.795 kb on + strand, within Echvi_3558at 4218.795 kb on + strand, within Echvi_3558at 4218.796 kb on - strand, within Echvi_3558

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.8 mM
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4,216,471 - Echvi_3556 0.18 -0.0
4,216,510 + Echvi_3556 0.22 -0.4
4,216,511 - Echvi_3556 0.22 +1.0
4,216,551 + Echvi_3556 0.25 -0.5
4,216,598 - Echvi_3556 0.29 -0.1
4,216,598 - Echvi_3556 0.29 -0.6
4,216,598 - Echvi_3556 0.29 +1.3
4,216,598 - Echvi_3556 0.29 -0.9
4,216,664 - Echvi_3556 0.35 +0.4
4,216,664 - Echvi_3556 0.35 -0.2
4,216,664 - Echvi_3556 0.35 +1.8
4,216,699 - Echvi_3556 0.38 +1.1
4,216,714 + Echvi_3556 0.39 -0.2
4,216,714 + Echvi_3556 0.39 +0.5
4,216,715 - Echvi_3556 0.39 -0.1
4,216,715 - Echvi_3556 0.39 +0.6
4,216,746 + Echvi_3556 0.42 +0.2
4,216,747 - Echvi_3556 0.42 +0.6
4,216,772 + Echvi_3556 0.44 -0.0
4,216,792 - Echvi_3556 0.45 -2.5
4,216,823 - Echvi_3556 0.48 +0.7
4,216,843 + Echvi_3556 0.50 +0.4
4,216,843 + Echvi_3556 0.50 +0.2
4,216,843 + Echvi_3556 0.50 +0.0
4,216,844 - Echvi_3556 0.50 +0.9
4,216,884 - Echvi_3556 0.53 +0.4
4,216,884 - Echvi_3556 0.53 +0.6
4,216,885 + Echvi_3556 0.53 -0.3
4,216,886 - Echvi_3556 0.53 -0.0
4,216,894 - Echvi_3556 0.54 +1.1
4,216,939 + Echvi_3556 0.58 -0.2
4,216,940 - Echvi_3556 0.58 -0.4
4,217,015 + Echvi_3556 0.64 +0.4
4,217,015 + Echvi_3556 0.64 +0.0
4,217,015 + Echvi_3556 0.64 -0.6
4,217,104 + Echvi_3556 0.72 -0.8
4,217,105 - Echvi_3556 0.72 -0.9
4,217,105 - Echvi_3556 0.72 -0.2
4,217,105 - Echvi_3556 0.72 -0.8
4,217,105 - Echvi_3556 0.72 +0.8
4,217,125 - Echvi_3556 0.74 +0.2
4,217,136 - Echvi_3556 0.74 -0.3
4,217,170 + Echvi_3556 0.77 +0.6
4,217,278 - Echvi_3556 0.86 +0.4
4,217,296 + Echvi_3556 0.88 -1.0
4,217,297 - Echvi_3556 0.88 +0.0
4,217,308 + Echvi_3556 0.89 -1.4
4,217,385 + -0.0
4,217,428 - +0.4
4,217,450 - -2.8
4,217,469 + -0.1
4,217,546 + Echvi_3557 0.22 -0.9
4,217,546 + Echvi_3557 0.22 -0.5
4,217,649 + Echvi_3557 0.45 -2.0
4,217,728 + Echvi_3557 0.63 -0.3
4,217,853 - -2.1
4,217,865 + +0.4
4,217,866 - -0.7
4,217,874 + +1.2
4,217,878 - -0.0
4,217,878 - -0.2
4,217,914 + -0.1
4,217,916 + +1.2
4,217,930 + -0.7
4,217,930 + +1.5
4,217,933 + +0.9
4,217,934 - -1.0
4,218,083 + +0.3
4,218,084 - +0.1
4,218,087 + -0.4
4,218,087 + +0.4
4,218,088 - -0.7
4,218,088 - +0.1
4,218,119 + +0.5
4,218,143 + -0.7
4,218,144 - -0.0
4,218,144 - +0.4
4,218,184 - +0.0
4,218,184 - -0.2
4,218,186 - +0.1
4,218,191 + -0.8
4,218,192 - -0.1
4,218,208 - -1.6
4,218,252 + +1.9
4,218,340 + Echvi_3558 0.16 -1.4
4,218,341 - Echvi_3558 0.16 +0.1
4,218,470 - Echvi_3558 0.26 +0.2
4,218,470 - Echvi_3558 0.26 -0.9
4,218,616 + Echvi_3558 0.37 +0.7
4,218,617 - Echvi_3558 0.37 -0.4
4,218,647 - Echvi_3558 0.40 -1.9
4,218,647 - Echvi_3558 0.40 -0.1
4,218,647 - Echvi_3558 0.40 +0.0
4,218,711 + Echvi_3558 0.45 +0.2
4,218,711 + Echvi_3558 0.45 +0.5
4,218,712 - Echvi_3558 0.45 +0.2
4,218,712 - Echvi_3558 0.45 -0.5
4,218,795 + Echvi_3558 0.51 -0.4
4,218,795 + Echvi_3558 0.51 +0.7
4,218,796 - Echvi_3558 0.51 -0.1

Or see this region's nucleotide sequence