Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3546

Experiment: m.b. Cobalt chloride 0.8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3545 and Echvi_3546 overlap by 4 nucleotidesEchvi_3546 and Echvi_3547 are separated by 1 nucleotidesEchvi_3547 and Echvi_3548 overlap by 32 nucleotides Echvi_3545: Echvi_3545 - ABC-type Mn2+/Zn2+ transport systems, permease components, at 4,203,999 to 4,204,904 _3545 Echvi_3546: Echvi_3546 - ABC-type Mn2+/Zn2+ transport systems, permease components, at 4,204,901 to 4,206,193 _3546 Echvi_3547: Echvi_3547 - ABC-type Mn/Zn transport systems, ATPase component, at 4,206,195 to 4,206,983 _3547 Echvi_3548: Echvi_3548 - ABC-type metal ion transport system, periplasmic component/surface adhesin, at 4,206,952 to 4,207,896 _3548 Position (kb) 4204 4205 4206 4207Strain fitness (log2 ratio) -2 -1 0 1at 4203.904 kb on + strandat 4203.905 kb on - strandat 4203.905 kb on - strandat 4203.950 kb on + strandat 4203.951 kb on - strandat 4203.958 kb on + strandat 4203.958 kb on + strandat 4203.958 kb on + strandat 4203.962 kb on - strandat 4203.962 kb on - strandat 4203.976 kb on + strandat 4204.026 kb on + strandat 4204.928 kb on - strandat 4205.000 kb on - strandat 4205.002 kb on + strandat 4205.003 kb on - strandat 4205.055 kb on + strand, within Echvi_3546at 4205.056 kb on - strand, within Echvi_3546at 4205.056 kb on - strand, within Echvi_3546at 4205.068 kb on - strand, within Echvi_3546at 4205.068 kb on - strand, within Echvi_3546at 4205.093 kb on + strand, within Echvi_3546at 4205.157 kb on - strandat 4205.309 kb on - strand, within Echvi_3546at 4205.317 kb on - strand, within Echvi_3546

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.8 mM
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4,203,904 + +0.2
4,203,905 - +0.2
4,203,905 - -0.1
4,203,950 + -0.9
4,203,951 - -1.8
4,203,958 + -0.1
4,203,958 + -0.6
4,203,958 + -1.0
4,203,962 - +0.5
4,203,962 - +0.2
4,203,976 + -2.5
4,204,026 + -0.1
4,204,928 - +1.7
4,205,000 - +0.3
4,205,002 + +0.9
4,205,003 - +0.5
4,205,055 + Echvi_3546 0.12 -1.1
4,205,056 - Echvi_3546 0.12 -2.2
4,205,056 - Echvi_3546 0.12 +0.6
4,205,068 - Echvi_3546 0.13 +1.1
4,205,068 - Echvi_3546 0.13 +0.1
4,205,093 + Echvi_3546 0.15 -0.9
4,205,157 - +0.5
4,205,309 - Echvi_3546 0.32 -0.3
4,205,317 - Echvi_3546 0.32 -1.1

Or see this region's nucleotide sequence