Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3147

Experiment: m.b. Cobalt chloride 0.8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3146 and Echvi_3147 are separated by 196 nucleotidesEchvi_3147 and Echvi_3148 are separated by 69 nucleotidesEchvi_3148 and Echvi_3149 are separated by 165 nucleotides Echvi_3146: Echvi_3146 - hypothetical protein, at 3,756,724 to 3,757,611 _3146 Echvi_3147: Echvi_3147 - AraC-type DNA-binding domain-containing proteins, at 3,757,808 to 3,758,389 _3147 Echvi_3148: Echvi_3148 - KWG Leptospira., at 3,758,459 to 3,759,058 _3148 Echvi_3149: Echvi_3149 - hypothetical protein, at 3,759,224 to 3,759,703 _3149 Position (kb) 3757 3758 3759Strain fitness (log2 ratio) -2 -1 0 1 2at 3757.673 kb on - strandat 3757.673 kb on - strandat 3757.679 kb on - strandat 3757.681 kb on - strandat 3757.742 kb on - strandat 3757.753 kb on + strandat 3757.795 kb on + strandat 3757.796 kb on - strandat 3757.796 kb on - strandat 3757.802 kb on + strandat 3757.802 kb on + strandat 3757.803 kb on - strandat 3757.803 kb on - strandat 3757.803 kb on - strandat 3757.803 kb on - strandat 3757.803 kb on - strandat 3757.803 kb on - strandat 3757.805 kb on - strandat 3757.805 kb on - strandat 3757.805 kb on - strandat 3757.805 kb on - strandat 3757.807 kb on + strandat 3757.808 kb on - strandat 3757.866 kb on + strandat 3757.870 kb on + strand, within Echvi_3147at 3757.881 kb on + strand, within Echvi_3147at 3757.983 kb on + strand, within Echvi_3147at 3758.086 kb on + strand, within Echvi_3147at 3758.086 kb on + strand, within Echvi_3147at 3758.086 kb on + strand, within Echvi_3147at 3758.087 kb on - strand, within Echvi_3147at 3758.087 kb on - strand, within Echvi_3147at 3758.087 kb on - strand, within Echvi_3147at 3758.087 kb on - strand, within Echvi_3147at 3758.087 kb on - strand, within Echvi_3147at 3758.087 kb on - strand, within Echvi_3147at 3758.090 kb on - strand, within Echvi_3147at 3758.090 kb on - strand, within Echvi_3147at 3758.090 kb on - strand, within Echvi_3147at 3758.095 kb on - strand, within Echvi_3147at 3758.110 kb on - strand, within Echvi_3147at 3758.136 kb on - strand, within Echvi_3147at 3758.257 kb on + strand, within Echvi_3147at 3758.287 kb on - strand, within Echvi_3147at 3758.324 kb on - strand, within Echvi_3147at 3758.330 kb on - strand, within Echvi_3147at 3758.383 kb on + strandat 3758.388 kb on - strandat 3758.516 kb on - strandat 3758.531 kb on + strand, within Echvi_3148at 3758.531 kb on + strand, within Echvi_3148at 3758.533 kb on + strand, within Echvi_3148at 3758.533 kb on + strand, within Echvi_3148at 3758.611 kb on - strand, within Echvi_3148at 3758.635 kb on - strand, within Echvi_3148at 3758.664 kb on - strand, within Echvi_3148at 3758.692 kb on - strand, within Echvi_3148at 3758.721 kb on - strand, within Echvi_3148at 3758.729 kb on + strand, within Echvi_3148at 3758.730 kb on - strand, within Echvi_3148at 3758.837 kb on + strand, within Echvi_3148at 3758.838 kb on - strand, within Echvi_3148at 3758.840 kb on - strand, within Echvi_3148at 3758.866 kb on - strand, within Echvi_3148at 3758.871 kb on - strand, within Echvi_3148at 3758.871 kb on - strand, within Echvi_3148at 3758.871 kb on - strand, within Echvi_3148at 3758.891 kb on - strand, within Echvi_3148at 3758.893 kb on - strand, within Echvi_3148at 3758.893 kb on - strand, within Echvi_3148at 3758.909 kb on - strand, within Echvi_3148at 3758.957 kb on - strand, within Echvi_3148at 3759.077 kb on + strandat 3759.130 kb on + strandat 3759.366 kb on - strand, within Echvi_3149at 3759.366 kb on - strand, within Echvi_3149at 3759.366 kb on - strand, within Echvi_3149at 3759.367 kb on + strandat 3759.367 kb on + strand, within Echvi_3149at 3759.367 kb on + strand, within Echvi_3149at 3759.368 kb on - strand, within Echvi_3149at 3759.368 kb on - strand, within Echvi_3149at 3759.368 kb on - strand, within Echvi_3149at 3759.388 kb on + strand, within Echvi_3149at 3759.389 kb on - strand, within Echvi_3149at 3759.389 kb on - strand, within Echvi_3149at 3759.389 kb on - strand, within Echvi_3149

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.8 mM
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3,757,673 - -2.2
3,757,673 - +0.9
3,757,679 - -0.8
3,757,681 - +0.5
3,757,742 - -0.2
3,757,753 + +0.1
3,757,795 + +0.9
3,757,796 - +0.2
3,757,796 - +0.9
3,757,802 + -0.1
3,757,802 + -0.9
3,757,803 - -0.0
3,757,803 - +0.6
3,757,803 - -0.1
3,757,803 - +0.9
3,757,803 - -0.3
3,757,803 - +0.2
3,757,805 - +0.5
3,757,805 - -0.8
3,757,805 - +1.5
3,757,805 - -0.1
3,757,807 + -2.4
3,757,808 - +0.9
3,757,866 + +1.1
3,757,870 + Echvi_3147 0.11 +0.2
3,757,881 + Echvi_3147 0.13 -0.1
3,757,983 + Echvi_3147 0.30 -0.7
3,758,086 + Echvi_3147 0.48 -1.2
3,758,086 + Echvi_3147 0.48 -1.4
3,758,086 + Echvi_3147 0.48 -1.7
3,758,087 - Echvi_3147 0.48 -0.2
3,758,087 - Echvi_3147 0.48 -0.7
3,758,087 - Echvi_3147 0.48 -0.3
3,758,087 - Echvi_3147 0.48 -0.1
3,758,087 - Echvi_3147 0.48 -0.7
3,758,087 - Echvi_3147 0.48 -0.8
3,758,090 - Echvi_3147 0.48 -0.5
3,758,090 - Echvi_3147 0.48 +0.5
3,758,090 - Echvi_3147 0.48 +1.7
3,758,095 - Echvi_3147 0.49 -0.4
3,758,110 - Echvi_3147 0.52 -0.0
3,758,136 - Echvi_3147 0.56 +0.0
3,758,257 + Echvi_3147 0.77 -1.1
3,758,287 - Echvi_3147 0.82 -1.2
3,758,324 - Echvi_3147 0.89 -2.1
3,758,330 - Echvi_3147 0.90 -1.3
3,758,383 + -0.4
3,758,388 - -2.1
3,758,516 - -1.9
3,758,531 + Echvi_3148 0.12 -2.5
3,758,531 + Echvi_3148 0.12 -0.2
3,758,533 + Echvi_3148 0.12 -0.3
3,758,533 + Echvi_3148 0.12 +1.9
3,758,611 - Echvi_3148 0.25 -1.2
3,758,635 - Echvi_3148 0.29 +0.3
3,758,664 - Echvi_3148 0.34 -0.0
3,758,692 - Echvi_3148 0.39 -0.5
3,758,721 - Echvi_3148 0.44 -0.6
3,758,729 + Echvi_3148 0.45 -0.4
3,758,730 - Echvi_3148 0.45 +0.6
3,758,837 + Echvi_3148 0.63 +0.8
3,758,838 - Echvi_3148 0.63 -1.0
3,758,840 - Echvi_3148 0.64 -0.1
3,758,866 - Echvi_3148 0.68 +0.7
3,758,871 - Echvi_3148 0.69 -0.6
3,758,871 - Echvi_3148 0.69 -0.5
3,758,871 - Echvi_3148 0.69 -0.1
3,758,891 - Echvi_3148 0.72 -1.7
3,758,893 - Echvi_3148 0.72 -0.3
3,758,893 - Echvi_3148 0.72 +0.2
3,758,909 - Echvi_3148 0.75 -0.3
3,758,957 - Echvi_3148 0.83 -0.2
3,759,077 + -1.6
3,759,130 + -1.4
3,759,366 - Echvi_3149 0.30 +0.6
3,759,366 - Echvi_3149 0.30 +0.4
3,759,366 - Echvi_3149 0.30 -0.3
3,759,367 + +0.2
3,759,367 + Echvi_3149 0.30 -1.1
3,759,367 + Echvi_3149 0.30 +0.1
3,759,368 - Echvi_3149 0.30 -0.5
3,759,368 - Echvi_3149 0.30 -0.3
3,759,368 - Echvi_3149 0.30 +1.4
3,759,388 + Echvi_3149 0.34 +0.2
3,759,389 - Echvi_3149 0.34 -0.6
3,759,389 - Echvi_3149 0.34 -0.4
3,759,389 - Echvi_3149 0.34 +0.5

Or see this region's nucleotide sequence