Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3131

Experiment: m.b. Cobalt chloride 0.8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3129 and Echvi_3130 are separated by 399 nucleotidesEchvi_3130 and Echvi_3131 are separated by 191 nucleotidesEchvi_3131 and Echvi_3132 are separated by 175 nucleotidesEchvi_3132 and Echvi_3133 are separated by 160 nucleotides Echvi_3129: Echvi_3129 - hypothetical protein, at 3,742,649 to 3,742,801 _3129 Echvi_3130: Echvi_3130 - tRNA, at 3,743,201 to 3,743,285 _3130 Echvi_3131: Echvi_3131 - Arginase/agmatinase/formimionoglutamate hydrolase, arginase family, at 3,743,477 to 3,744,547 _3131 Echvi_3132: Echvi_3132 - Phosphohistidine phosphatase SixA, at 3,744,723 to 3,745,202 _3132 Echvi_3133: Echvi_3133 - DNA topoisomerase I, bacterial, at 3,745,363 to 3,747,684 _3133 Position (kb) 3743 3744 3745Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3742.517 kb on - strandat 3742.523 kb on + strandat 3742.523 kb on + strandat 3742.524 kb on - strandat 3742.526 kb on - strandat 3742.587 kb on + strandat 3742.699 kb on + strand, within Echvi_3129at 3742.719 kb on + strand, within Echvi_3129at 3742.773 kb on + strand, within Echvi_3129at 3742.773 kb on + strand, within Echvi_3129at 3742.773 kb on + strand, within Echvi_3129at 3742.773 kb on + strand, within Echvi_3129at 3742.773 kb on + strand, within Echvi_3129at 3742.774 kb on - strand, within Echvi_3129at 3742.774 kb on - strand, within Echvi_3129at 3742.775 kb on + strand, within Echvi_3129at 3742.861 kb on + strandat 3742.863 kb on + strandat 3742.863 kb on + strandat 3742.863 kb on + strandat 3742.863 kb on + strandat 3742.863 kb on + strandat 3742.863 kb on + strandat 3742.863 kb on + strandat 3742.864 kb on - strandat 3742.864 kb on - strandat 3742.864 kb on - strandat 3742.924 kb on - strandat 3742.929 kb on + strandat 3742.930 kb on - strandat 3742.930 kb on - strandat 3742.975 kb on - strandat 3743.104 kb on + strandat 3743.105 kb on - strandat 3743.111 kb on - strandat 3743.111 kb on - strandat 3743.146 kb on + strandat 3743.147 kb on - strandat 3743.155 kb on - strandat 3743.155 kb on - strandat 3743.157 kb on + strandat 3743.339 kb on + strandat 3743.340 kb on - strandat 3743.376 kb on + strandat 3743.377 kb on - strandat 3743.435 kb on - strandat 3743.453 kb on - strandat 3743.490 kb on - strandat 3743.527 kb on + strandat 3743.528 kb on - strandat 3743.534 kb on + strandat 3743.566 kb on + strandat 3743.586 kb on - strand, within Echvi_3131at 3743.692 kb on + strand, within Echvi_3131at 3743.735 kb on - strand, within Echvi_3131at 3743.735 kb on - strand, within Echvi_3131at 3743.765 kb on + strand, within Echvi_3131at 3743.802 kb on + strand, within Echvi_3131at 3743.802 kb on + strand, within Echvi_3131at 3743.819 kb on - strand, within Echvi_3131at 3743.845 kb on + strand, within Echvi_3131at 3744.005 kb on + strand, within Echvi_3131at 3744.015 kb on - strand, within Echvi_3131at 3744.052 kb on + strand, within Echvi_3131at 3744.070 kb on + strand, within Echvi_3131at 3744.071 kb on - strand, within Echvi_3131at 3744.071 kb on - strand, within Echvi_3131at 3744.132 kb on + strand, within Echvi_3131at 3744.237 kb on + strand, within Echvi_3131at 3744.271 kb on + strand, within Echvi_3131at 3744.276 kb on + strand, within Echvi_3131at 3744.277 kb on - strand, within Echvi_3131at 3744.301 kb on + strand, within Echvi_3131at 3744.564 kb on + strandat 3744.615 kb on - strandat 3744.616 kb on + strandat 3744.617 kb on - strandat 3744.663 kb on - strandat 3744.732 kb on + strandat 3744.732 kb on + strandat 3744.758 kb on + strandat 3744.827 kb on + strand, within Echvi_3132at 3744.827 kb on + strand, within Echvi_3132at 3744.828 kb on - strand, within Echvi_3132at 3744.847 kb on + strand, within Echvi_3132at 3744.848 kb on - strand, within Echvi_3132at 3744.888 kb on + strand, within Echvi_3132at 3744.888 kb on + strand, within Echvi_3132at 3744.889 kb on - strand, within Echvi_3132at 3744.889 kb on - strand, within Echvi_3132at 3744.896 kb on + strand, within Echvi_3132at 3744.896 kb on + strand, within Echvi_3132at 3744.897 kb on - strand, within Echvi_3132at 3744.897 kb on - strand, within Echvi_3132at 3744.897 kb on - strand, within Echvi_3132at 3745.063 kb on - strand, within Echvi_3132at 3745.189 kb on - strandat 3745.192 kb on - strandat 3745.192 kb on - strandat 3745.215 kb on - strandat 3745.248 kb on + strandat 3745.297 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.8 mM
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3,742,517 - -0.2
3,742,523 + -1.2
3,742,523 + -0.5
3,742,524 - +0.5
3,742,526 - +1.2
3,742,587 + -1.0
3,742,699 + Echvi_3129 0.33 +0.7
3,742,719 + Echvi_3129 0.46 -1.7
3,742,773 + Echvi_3129 0.81 -0.4
3,742,773 + Echvi_3129 0.81 +0.7
3,742,773 + Echvi_3129 0.81 +0.5
3,742,773 + Echvi_3129 0.81 -0.4
3,742,773 + Echvi_3129 0.81 +0.0
3,742,774 - Echvi_3129 0.82 +0.6
3,742,774 - Echvi_3129 0.82 -0.8
3,742,775 + Echvi_3129 0.82 +2.1
3,742,861 + +0.5
3,742,863 + +0.2
3,742,863 + -0.6
3,742,863 + -0.2
3,742,863 + +0.2
3,742,863 + -1.0
3,742,863 + -0.4
3,742,863 + -1.2
3,742,864 - +0.8
3,742,864 - +0.3
3,742,864 - -1.7
3,742,924 - +0.1
3,742,929 + -0.4
3,742,930 - +0.2
3,742,930 - +0.1
3,742,975 - +1.7
3,743,104 + +0.8
3,743,105 - +0.6
3,743,111 - -0.6
3,743,111 - -1.9
3,743,146 + -0.6
3,743,147 - +1.4
3,743,155 - -0.1
3,743,155 - -0.5
3,743,157 + -2.4
3,743,339 + +0.1
3,743,340 - +0.7
3,743,376 + -1.2
3,743,377 - +0.5
3,743,435 - -1.0
3,743,453 - +0.4
3,743,490 - -2.0
3,743,527 + -1.4
3,743,528 - -2.3
3,743,534 + +0.1
3,743,566 + -0.3
3,743,586 - Echvi_3131 0.10 -0.3
3,743,692 + Echvi_3131 0.20 -1.2
3,743,735 - Echvi_3131 0.24 -1.6
3,743,735 - Echvi_3131 0.24 -0.3
3,743,765 + Echvi_3131 0.27 -1.1
3,743,802 + Echvi_3131 0.30 +1.2
3,743,802 + Echvi_3131 0.30 -3.3
3,743,819 - Echvi_3131 0.32 -2.4
3,743,845 + Echvi_3131 0.34 -0.6
3,744,005 + Echvi_3131 0.49 -0.7
3,744,015 - Echvi_3131 0.50 -0.8
3,744,052 + Echvi_3131 0.54 -1.5
3,744,070 + Echvi_3131 0.55 -3.1
3,744,071 - Echvi_3131 0.55 -0.5
3,744,071 - Echvi_3131 0.55 +0.2
3,744,132 + Echvi_3131 0.61 +1.1
3,744,237 + Echvi_3131 0.71 -0.7
3,744,271 + Echvi_3131 0.74 -1.8
3,744,276 + Echvi_3131 0.75 +0.5
3,744,277 - Echvi_3131 0.75 +0.1
3,744,301 + Echvi_3131 0.77 -0.4
3,744,564 + -0.2
3,744,615 - +0.4
3,744,616 + +0.8
3,744,617 - +0.5
3,744,663 - -1.1
3,744,732 + -0.9
3,744,732 + +2.1
3,744,758 + -0.9
3,744,827 + Echvi_3132 0.22 -0.9
3,744,827 + Echvi_3132 0.22 +0.1
3,744,828 - Echvi_3132 0.22 -0.9
3,744,847 + Echvi_3132 0.26 +0.0
3,744,848 - Echvi_3132 0.26 -1.6
3,744,888 + Echvi_3132 0.34 +1.9
3,744,888 + Echvi_3132 0.34 -0.9
3,744,889 - Echvi_3132 0.35 -1.1
3,744,889 - Echvi_3132 0.35 +0.1
3,744,896 + Echvi_3132 0.36 -0.1
3,744,896 + Echvi_3132 0.36 +0.1
3,744,897 - Echvi_3132 0.36 +0.5
3,744,897 - Echvi_3132 0.36 -1.8
3,744,897 - Echvi_3132 0.36 -0.1
3,745,063 - Echvi_3132 0.71 +0.6
3,745,189 - -1.2
3,745,192 - +0.2
3,745,192 - +0.3
3,745,215 - -1.2
3,745,248 + -0.4
3,745,297 + +0.2

Or see this region's nucleotide sequence