Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3093

Experiment: m.b. Cobalt chloride 0.8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3092 and Echvi_3093 are separated by 122 nucleotidesEchvi_3093 and Echvi_3094 overlap by 4 nucleotidesEchvi_3094 and Echvi_3095 are separated by 160 nucleotides Echvi_3092: Echvi_3092 - Predicted dehydrogenases and related proteins, at 3,693,801 to 3,694,811 _3092 Echvi_3093: Echvi_3093 - hypothetical protein, at 3,694,934 to 3,695,632 _3093 Echvi_3094: Echvi_3094 - Protein of unknown function (DUF3307)., at 3,695,629 to 3,696,333 _3094 Echvi_3095: Echvi_3095 - Arylsulfatase A and related enzymes, at 3,696,494 to 3,698,104 _3095 Position (kb) 3694 3695 3696Strain fitness (log2 ratio) -2 -1 0 1 2at 3694.001 kb on - strand, within Echvi_3092at 3694.026 kb on + strand, within Echvi_3092at 3694.026 kb on + strand, within Echvi_3092at 3694.027 kb on - strand, within Echvi_3092at 3694.027 kb on - strand, within Echvi_3092at 3694.027 kb on - strand, within Echvi_3092at 3694.060 kb on - strand, within Echvi_3092at 3694.062 kb on - strand, within Echvi_3092at 3694.067 kb on - strand, within Echvi_3092at 3694.095 kb on + strand, within Echvi_3092at 3694.122 kb on + strand, within Echvi_3092at 3694.177 kb on - strand, within Echvi_3092at 3694.202 kb on - strand, within Echvi_3092at 3694.269 kb on - strand, within Echvi_3092at 3694.455 kb on + strand, within Echvi_3092at 3694.456 kb on - strand, within Echvi_3092at 3694.456 kb on - strand, within Echvi_3092at 3694.456 kb on - strand, within Echvi_3092at 3694.474 kb on + strand, within Echvi_3092at 3694.475 kb on - strand, within Echvi_3092at 3694.475 kb on - strand, within Echvi_3092at 3694.475 kb on - strand, within Echvi_3092at 3694.477 kb on + strand, within Echvi_3092at 3694.478 kb on - strand, within Echvi_3092at 3694.560 kb on - strand, within Echvi_3092at 3694.570 kb on - strand, within Echvi_3092at 3694.570 kb on - strand, within Echvi_3092at 3694.594 kb on - strand, within Echvi_3092at 3694.718 kb on - strandat 3694.748 kb on - strandat 3694.772 kb on - strandat 3694.772 kb on - strandat 3694.891 kb on + strandat 3694.895 kb on + strandat 3694.895 kb on + strandat 3694.898 kb on + strandat 3694.898 kb on + strandat 3694.905 kb on + strandat 3694.911 kb on + strandat 3694.922 kb on + strandat 3694.931 kb on + strandat 3694.931 kb on + strandat 3695.061 kb on - strand, within Echvi_3093at 3695.085 kb on - strand, within Echvi_3093at 3695.085 kb on - strand, within Echvi_3093at 3695.204 kb on - strand, within Echvi_3093at 3695.258 kb on - strand, within Echvi_3093at 3695.609 kb on - strandat 3695.671 kb on - strandat 3695.748 kb on - strand, within Echvi_3094at 3695.758 kb on - strand, within Echvi_3094at 3695.759 kb on + strand, within Echvi_3094at 3695.804 kb on - strand, within Echvi_3094at 3695.810 kb on + strand, within Echvi_3094at 3695.810 kb on + strand, within Echvi_3094at 3695.812 kb on + strand, within Echvi_3094at 3695.812 kb on + strand, within Echvi_3094at 3695.813 kb on - strand, within Echvi_3094at 3695.813 kb on - strand, within Echvi_3094at 3695.813 kb on - strand, within Echvi_3094at 3695.813 kb on - strand, within Echvi_3094at 3695.842 kb on + strand, within Echvi_3094at 3695.842 kb on + strand, within Echvi_3094at 3695.842 kb on + strand, within Echvi_3094at 3695.843 kb on - strand, within Echvi_3094at 3695.843 kb on - strand, within Echvi_3094at 3695.871 kb on - strand, within Echvi_3094at 3695.871 kb on - strand, within Echvi_3094at 3695.939 kb on + strand, within Echvi_3094at 3695.939 kb on + strand, within Echvi_3094at 3695.940 kb on - strand, within Echvi_3094at 3695.965 kb on + strand, within Echvi_3094at 3696.032 kb on - strand, within Echvi_3094at 3696.033 kb on + strand, within Echvi_3094at 3696.033 kb on + strand, within Echvi_3094at 3696.033 kb on + strand, within Echvi_3094at 3696.033 kb on + strand, within Echvi_3094at 3696.034 kb on - strand, within Echvi_3094at 3696.034 kb on - strand, within Echvi_3094at 3696.034 kb on - strand, within Echvi_3094at 3696.034 kb on - strand, within Echvi_3094at 3696.034 kb on - strand, within Echvi_3094at 3696.038 kb on + strand, within Echvi_3094at 3696.038 kb on + strand, within Echvi_3094at 3696.038 kb on + strand, within Echvi_3094at 3696.227 kb on + strand, within Echvi_3094at 3696.276 kb on + strandat 3696.277 kb on - strandat 3696.285 kb on + strandat 3696.285 kb on + strandat 3696.321 kb on - strandat 3696.321 kb on - strandat 3696.330 kb on - strandat 3696.357 kb on - strandat 3696.357 kb on - strandat 3696.357 kb on - strandat 3696.409 kb on + strandat 3696.410 kb on - strandat 3696.437 kb on - strandat 3696.437 kb on - strandat 3696.438 kb on + strandat 3696.441 kb on + strandat 3696.479 kb on + strandat 3696.480 kb on - strandat 3696.488 kb on + strandat 3696.488 kb on + strandat 3696.489 kb on - strandat 3696.498 kb on - strandat 3696.498 kb on - strandat 3696.549 kb on + strandat 3696.581 kb on - strandat 3696.626 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.8 mM
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3,694,001 - Echvi_3092 0.20 +1.1
3,694,026 + Echvi_3092 0.22 -0.5
3,694,026 + Echvi_3092 0.22 +0.6
3,694,027 - Echvi_3092 0.22 -0.1
3,694,027 - Echvi_3092 0.22 +0.8
3,694,027 - Echvi_3092 0.22 -1.7
3,694,060 - Echvi_3092 0.26 +0.5
3,694,062 - Echvi_3092 0.26 +0.5
3,694,067 - Echvi_3092 0.26 +0.4
3,694,095 + Echvi_3092 0.29 +0.9
3,694,122 + Echvi_3092 0.32 +0.0
3,694,177 - Echvi_3092 0.37 -0.0
3,694,202 - Echvi_3092 0.40 -0.6
3,694,269 - Echvi_3092 0.46 +0.5
3,694,455 + Echvi_3092 0.65 -0.5
3,694,456 - Echvi_3092 0.65 +0.5
3,694,456 - Echvi_3092 0.65 -0.1
3,694,456 - Echvi_3092 0.65 -0.2
3,694,474 + Echvi_3092 0.67 -0.2
3,694,475 - Echvi_3092 0.67 +1.5
3,694,475 - Echvi_3092 0.67 +0.2
3,694,475 - Echvi_3092 0.67 +0.4
3,694,477 + Echvi_3092 0.67 +1.5
3,694,478 - Echvi_3092 0.67 -2.0
3,694,560 - Echvi_3092 0.75 -0.1
3,694,570 - Echvi_3092 0.76 -1.0
3,694,570 - Echvi_3092 0.76 -1.2
3,694,594 - Echvi_3092 0.78 -0.3
3,694,718 - -0.2
3,694,748 - +0.3
3,694,772 - -0.8
3,694,772 - -1.5
3,694,891 + -0.5
3,694,895 + -0.8
3,694,895 + +0.4
3,694,898 + +0.1
3,694,898 + -0.3
3,694,905 + +1.4
3,694,911 + -0.1
3,694,922 + +0.1
3,694,931 + -1.1
3,694,931 + +0.1
3,695,061 - Echvi_3093 0.18 -0.0
3,695,085 - Echvi_3093 0.22 -0.3
3,695,085 - Echvi_3093 0.22 -0.4
3,695,204 - Echvi_3093 0.39 -1.0
3,695,258 - Echvi_3093 0.46 -1.2
3,695,609 - -0.7
3,695,671 - +0.4
3,695,748 - Echvi_3094 0.17 +1.4
3,695,758 - Echvi_3094 0.18 +0.1
3,695,759 + Echvi_3094 0.18 +0.4
3,695,804 - Echvi_3094 0.25 +0.1
3,695,810 + Echvi_3094 0.26 +0.3
3,695,810 + Echvi_3094 0.26 -0.5
3,695,812 + Echvi_3094 0.26 +0.2
3,695,812 + Echvi_3094 0.26 -0.3
3,695,813 - Echvi_3094 0.26 +0.3
3,695,813 - Echvi_3094 0.26 -0.3
3,695,813 - Echvi_3094 0.26 +0.3
3,695,813 - Echvi_3094 0.26 +0.0
3,695,842 + Echvi_3094 0.30 +0.6
3,695,842 + Echvi_3094 0.30 +0.1
3,695,842 + Echvi_3094 0.30 -0.7
3,695,843 - Echvi_3094 0.30 +0.8
3,695,843 - Echvi_3094 0.30 -0.4
3,695,871 - Echvi_3094 0.34 +0.4
3,695,871 - Echvi_3094 0.34 +0.3
3,695,939 + Echvi_3094 0.44 -0.0
3,695,939 + Echvi_3094 0.44 -0.2
3,695,940 - Echvi_3094 0.44 +1.5
3,695,965 + Echvi_3094 0.48 -0.8
3,696,032 - Echvi_3094 0.57 +0.5
3,696,033 + Echvi_3094 0.57 -1.1
3,696,033 + Echvi_3094 0.57 +0.8
3,696,033 + Echvi_3094 0.57 -0.2
3,696,033 + Echvi_3094 0.57 +0.4
3,696,034 - Echvi_3094 0.57 +1.8
3,696,034 - Echvi_3094 0.57 +0.6
3,696,034 - Echvi_3094 0.57 -0.5
3,696,034 - Echvi_3094 0.57 -0.5
3,696,034 - Echvi_3094 0.57 -0.9
3,696,038 + Echvi_3094 0.58 +0.0
3,696,038 + Echvi_3094 0.58 +0.5
3,696,038 + Echvi_3094 0.58 +0.5
3,696,227 + Echvi_3094 0.85 +0.5
3,696,276 + +0.7
3,696,277 - +0.9
3,696,285 + -0.9
3,696,285 + -0.1
3,696,321 - +0.3
3,696,321 - -0.7
3,696,330 - +0.7
3,696,357 - -0.8
3,696,357 - -0.3
3,696,357 - +0.8
3,696,409 + +0.6
3,696,410 - +0.8
3,696,437 - -1.1
3,696,437 - -0.3
3,696,438 + -0.5
3,696,441 + +1.3
3,696,479 + +1.3
3,696,480 - -0.4
3,696,488 + -0.1
3,696,488 + -1.5
3,696,489 - +0.0
3,696,498 - -1.9
3,696,498 - +0.8
3,696,549 + +0.0
3,696,581 - -0.9
3,696,626 - +0.1

Or see this region's nucleotide sequence