Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2996

Experiment: m.b. Cobalt chloride 0.8 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_2994 and Echvi_2995 are separated by 38 nucleotidesEchvi_2995 and Echvi_2996 overlap by 38 nucleotidesEchvi_2996 and Echvi_2997 are separated by 28 nucleotides Echvi_2994: Echvi_2994 - DNA gyrase, B subunit, at 3,578,101 to 3,580,059 _2994 Echvi_2995: Echvi_2995 - hypothetical protein, at 3,580,098 to 3,580,271 _2995 Echvi_2996: Echvi_2996 - polyphosphate kinase 1, at 3,580,234 to 3,582,369 _2996 Echvi_2997: Echvi_2997 - Exopolyphosphatase, at 3,582,398 to 3,583,279 _2997 Position (kb) 3580 3581 3582 3583Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3580.039 kb on + strandat 3580.040 kb on - strandat 3580.076 kb on - strandat 3580.096 kb on - strandat 3580.110 kb on - strandat 3580.118 kb on + strand, within Echvi_2995at 3580.162 kb on + strand, within Echvi_2995at 3580.163 kb on - strand, within Echvi_2995at 3580.196 kb on + strand, within Echvi_2995at 3580.197 kb on - strand, within Echvi_2995at 3580.197 kb on - strand, within Echvi_2995at 3580.198 kb on + strand, within Echvi_2995at 3580.198 kb on + strand, within Echvi_2995at 3580.199 kb on - strand, within Echvi_2995at 3580.199 kb on - strand, within Echvi_2995at 3580.199 kb on - strand, within Echvi_2995at 3580.200 kb on + strand, within Echvi_2995at 3580.201 kb on - strand, within Echvi_2995at 3580.201 kb on - strand, within Echvi_2995at 3580.414 kb on - strandat 3580.455 kb on + strand, within Echvi_2996at 3580.723 kb on - strand, within Echvi_2996at 3580.723 kb on - strand, within Echvi_2996at 3580.873 kb on + strand, within Echvi_2996at 3580.874 kb on - strand, within Echvi_2996at 3581.088 kb on + strand, within Echvi_2996at 3581.214 kb on + strand, within Echvi_2996at 3581.319 kb on - strand, within Echvi_2996at 3581.330 kb on - strand, within Echvi_2996at 3581.387 kb on + strand, within Echvi_2996at 3581.654 kb on + strand, within Echvi_2996at 3581.654 kb on + strand, within Echvi_2996at 3581.655 kb on - strand, within Echvi_2996at 3581.887 kb on - strand, within Echvi_2996at 3581.940 kb on + strand, within Echvi_2996at 3582.074 kb on + strandat 3582.090 kb on + strand, within Echvi_2996at 3582.113 kb on + strand, within Echvi_2996at 3582.269 kb on - strandat 3582.307 kb on - strandat 3582.400 kb on - strandat 3582.412 kb on + strandat 3582.511 kb on + strand, within Echvi_2997at 3582.511 kb on + strand, within Echvi_2997at 3582.512 kb on - strand, within Echvi_2997at 3582.512 kb on - strand, within Echvi_2997at 3582.566 kb on + strand, within Echvi_2997at 3582.597 kb on + strand, within Echvi_2997at 3582.598 kb on - strand, within Echvi_2997at 3582.598 kb on - strand, within Echvi_2997at 3582.598 kb on - strand, within Echvi_2997at 3582.673 kb on + strand, within Echvi_2997at 3582.673 kb on + strand, within Echvi_2997at 3582.676 kb on + strand, within Echvi_2997at 3582.719 kb on - strand, within Echvi_2997at 3582.806 kb on - strand, within Echvi_2997at 3582.806 kb on - strand, within Echvi_2997at 3582.848 kb on - strand, within Echvi_2997at 3582.885 kb on + strand, within Echvi_2997at 3582.892 kb on + strand, within Echvi_2997at 3582.892 kb on + strand, within Echvi_2997at 3582.903 kb on + strand, within Echvi_2997at 3582.912 kb on - strand, within Echvi_2997at 3582.923 kb on - strand, within Echvi_2997at 3582.983 kb on + strand, within Echvi_2997at 3583.047 kb on + strand, within Echvi_2997at 3583.048 kb on - strand, within Echvi_2997at 3583.063 kb on - strand, within Echvi_2997at 3583.063 kb on - strand, within Echvi_2997at 3583.071 kb on - strand, within Echvi_2997at 3583.071 kb on - strand, within Echvi_2997at 3583.071 kb on - strand, within Echvi_2997at 3583.114 kb on + strand, within Echvi_2997at 3583.146 kb on - strand, within Echvi_2997at 3583.163 kb on + strand, within Echvi_2997at 3583.179 kb on + strand, within Echvi_2997at 3583.180 kb on - strand, within Echvi_2997at 3583.250 kb on - strandat 3583.262 kb on + strandat 3583.263 kb on - strandat 3583.263 kb on - strandat 3583.263 kb on - strandat 3583.283 kb on - strandat 3583.289 kb on - strandat 3583.293 kb on - strandat 3583.365 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.8 mM
remove
3,580,039 + -2.4
3,580,040 - +0.2
3,580,076 - -0.2
3,580,096 - +0.9
3,580,110 - -0.4
3,580,118 + Echvi_2995 0.11 -0.4
3,580,162 + Echvi_2995 0.37 +1.1
3,580,163 - Echvi_2995 0.37 +0.5
3,580,196 + Echvi_2995 0.56 -0.6
3,580,197 - Echvi_2995 0.57 -2.9
3,580,197 - Echvi_2995 0.57 -1.6
3,580,198 + Echvi_2995 0.57 -0.5
3,580,198 + Echvi_2995 0.57 +0.0
3,580,199 - Echvi_2995 0.58 -0.1
3,580,199 - Echvi_2995 0.58 -1.4
3,580,199 - Echvi_2995 0.58 -0.1
3,580,200 + Echvi_2995 0.59 -1.2
3,580,201 - Echvi_2995 0.59 +1.5
3,580,201 - Echvi_2995 0.59 -0.3
3,580,414 - +0.2
3,580,455 + Echvi_2996 0.10 -1.7
3,580,723 - Echvi_2996 0.23 -0.2
3,580,723 - Echvi_2996 0.23 -0.1
3,580,873 + Echvi_2996 0.30 -0.1
3,580,874 - Echvi_2996 0.30 -1.5
3,581,088 + Echvi_2996 0.40 -1.5
3,581,214 + Echvi_2996 0.46 +0.9
3,581,319 - Echvi_2996 0.51 -0.4
3,581,330 - Echvi_2996 0.51 +0.9
3,581,387 + Echvi_2996 0.54 -0.5
3,581,654 + Echvi_2996 0.66 -0.5
3,581,654 + Echvi_2996 0.66 -0.9
3,581,655 - Echvi_2996 0.67 -2.5
3,581,887 - Echvi_2996 0.77 -0.7
3,581,940 + Echvi_2996 0.80 -1.5
3,582,074 + +0.5
3,582,090 + Echvi_2996 0.87 -1.3
3,582,113 + Echvi_2996 0.88 +1.5
3,582,269 - -1.1
3,582,307 - -0.4
3,582,400 - -0.9
3,582,412 + +1.1
3,582,511 + Echvi_2997 0.13 +0.8
3,582,511 + Echvi_2997 0.13 +0.0
3,582,512 - Echvi_2997 0.13 +0.3
3,582,512 - Echvi_2997 0.13 +0.2
3,582,566 + Echvi_2997 0.19 -0.9
3,582,597 + Echvi_2997 0.23 +0.2
3,582,598 - Echvi_2997 0.23 +1.1
3,582,598 - Echvi_2997 0.23 +0.0
3,582,598 - Echvi_2997 0.23 +0.7
3,582,673 + Echvi_2997 0.31 +1.4
3,582,673 + Echvi_2997 0.31 -1.1
3,582,676 + Echvi_2997 0.32 +0.9
3,582,719 - Echvi_2997 0.36 -0.4
3,582,806 - Echvi_2997 0.46 -0.0
3,582,806 - Echvi_2997 0.46 -0.1
3,582,848 - Echvi_2997 0.51 +1.8
3,582,885 + Echvi_2997 0.55 -1.6
3,582,892 + Echvi_2997 0.56 -2.2
3,582,892 + Echvi_2997 0.56 -0.3
3,582,903 + Echvi_2997 0.57 +0.8
3,582,912 - Echvi_2997 0.58 +0.3
3,582,923 - Echvi_2997 0.60 -0.0
3,582,983 + Echvi_2997 0.66 -0.0
3,583,047 + Echvi_2997 0.74 -0.1
3,583,048 - Echvi_2997 0.74 +0.2
3,583,063 - Echvi_2997 0.75 +0.3
3,583,063 - Echvi_2997 0.75 +0.4
3,583,071 - Echvi_2997 0.76 +0.8
3,583,071 - Echvi_2997 0.76 +0.9
3,583,071 - Echvi_2997 0.76 +0.7
3,583,114 + Echvi_2997 0.81 -0.4
3,583,146 - Echvi_2997 0.85 -0.4
3,583,163 + Echvi_2997 0.87 +0.4
3,583,179 + Echvi_2997 0.89 +1.5
3,583,180 - Echvi_2997 0.89 -0.2
3,583,250 - -0.5
3,583,262 + -0.3
3,583,263 - -0.5
3,583,263 - -0.4
3,583,263 - +0.1
3,583,283 - +1.7
3,583,289 - -0.1
3,583,293 - +0.9
3,583,365 + +0.3

Or see this region's nucleotide sequence