Experiment: m.b. Cobalt chloride 0.8 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2994 and Echvi_2995 are separated by 38 nucleotides Echvi_2995 and Echvi_2996 overlap by 38 nucleotides Echvi_2996 and Echvi_2997 are separated by 28 nucleotides
Echvi_2994: Echvi_2994 - DNA gyrase, B subunit, at 3,578,101 to 3,580,059
_2994
Echvi_2995: Echvi_2995 - hypothetical protein, at 3,580,098 to 3,580,271
_2995
Echvi_2996: Echvi_2996 - polyphosphate kinase 1, at 3,580,234 to 3,582,369
_2996
Echvi_2997: Echvi_2997 - Exopolyphosphatase, at 3,582,398 to 3,583,279
_2997
Position (kb)
3580
3581
3582
3583 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3580.039 kb on + strand at 3580.040 kb on - strand at 3580.076 kb on - strand at 3580.096 kb on - strand at 3580.110 kb on - strand at 3580.118 kb on + strand, within Echvi_2995 at 3580.162 kb on + strand, within Echvi_2995 at 3580.163 kb on - strand, within Echvi_2995 at 3580.196 kb on + strand, within Echvi_2995 at 3580.197 kb on - strand, within Echvi_2995 at 3580.197 kb on - strand, within Echvi_2995 at 3580.198 kb on + strand, within Echvi_2995 at 3580.198 kb on + strand, within Echvi_2995 at 3580.199 kb on - strand, within Echvi_2995 at 3580.199 kb on - strand, within Echvi_2995 at 3580.199 kb on - strand, within Echvi_2995 at 3580.200 kb on + strand, within Echvi_2995 at 3580.201 kb on - strand, within Echvi_2995 at 3580.201 kb on - strand, within Echvi_2995 at 3580.414 kb on - strand at 3580.455 kb on + strand, within Echvi_2996 at 3580.723 kb on - strand, within Echvi_2996 at 3580.723 kb on - strand, within Echvi_2996 at 3580.873 kb on + strand, within Echvi_2996 at 3580.874 kb on - strand, within Echvi_2996 at 3581.088 kb on + strand, within Echvi_2996 at 3581.214 kb on + strand, within Echvi_2996 at 3581.319 kb on - strand, within Echvi_2996 at 3581.330 kb on - strand, within Echvi_2996 at 3581.387 kb on + strand, within Echvi_2996 at 3581.654 kb on + strand, within Echvi_2996 at 3581.654 kb on + strand, within Echvi_2996 at 3581.655 kb on - strand, within Echvi_2996 at 3581.887 kb on - strand, within Echvi_2996 at 3581.940 kb on + strand, within Echvi_2996 at 3582.074 kb on + strand at 3582.090 kb on + strand, within Echvi_2996 at 3582.113 kb on + strand, within Echvi_2996 at 3582.269 kb on - strand at 3582.307 kb on - strand at 3582.400 kb on - strand at 3582.412 kb on + strand at 3582.511 kb on + strand, within Echvi_2997 at 3582.511 kb on + strand, within Echvi_2997 at 3582.512 kb on - strand, within Echvi_2997 at 3582.512 kb on - strand, within Echvi_2997 at 3582.566 kb on + strand, within Echvi_2997 at 3582.597 kb on + strand, within Echvi_2997 at 3582.598 kb on - strand, within Echvi_2997 at 3582.598 kb on - strand, within Echvi_2997 at 3582.598 kb on - strand, within Echvi_2997 at 3582.673 kb on + strand, within Echvi_2997 at 3582.673 kb on + strand, within Echvi_2997 at 3582.676 kb on + strand, within Echvi_2997 at 3582.719 kb on - strand, within Echvi_2997 at 3582.806 kb on - strand, within Echvi_2997 at 3582.806 kb on - strand, within Echvi_2997 at 3582.848 kb on - strand, within Echvi_2997 at 3582.885 kb on + strand, within Echvi_2997 at 3582.892 kb on + strand, within Echvi_2997 at 3582.892 kb on + strand, within Echvi_2997 at 3582.903 kb on + strand, within Echvi_2997 at 3582.912 kb on - strand, within Echvi_2997 at 3582.923 kb on - strand, within Echvi_2997 at 3582.983 kb on + strand, within Echvi_2997 at 3583.047 kb on + strand, within Echvi_2997 at 3583.048 kb on - strand, within Echvi_2997 at 3583.063 kb on - strand, within Echvi_2997 at 3583.063 kb on - strand, within Echvi_2997 at 3583.071 kb on - strand, within Echvi_2997 at 3583.071 kb on - strand, within Echvi_2997 at 3583.071 kb on - strand, within Echvi_2997 at 3583.114 kb on + strand, within Echvi_2997 at 3583.146 kb on - strand, within Echvi_2997 at 3583.163 kb on + strand, within Echvi_2997 at 3583.179 kb on + strand, within Echvi_2997 at 3583.180 kb on - strand, within Echvi_2997 at 3583.250 kb on - strand at 3583.262 kb on + strand at 3583.263 kb on - strand at 3583.263 kb on - strand at 3583.263 kb on - strand at 3583.283 kb on - strand at 3583.289 kb on - strand at 3583.293 kb on - strand at 3583.365 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.8 mM remove 3,580,039 + -2.4 3,580,040 - +0.2 3,580,076 - -0.2 3,580,096 - +0.9 3,580,110 - -0.4 3,580,118 + Echvi_2995 0.11 -0.4 3,580,162 + Echvi_2995 0.37 +1.1 3,580,163 - Echvi_2995 0.37 +0.5 3,580,196 + Echvi_2995 0.56 -0.6 3,580,197 - Echvi_2995 0.57 -2.9 3,580,197 - Echvi_2995 0.57 -1.6 3,580,198 + Echvi_2995 0.57 -0.5 3,580,198 + Echvi_2995 0.57 +0.0 3,580,199 - Echvi_2995 0.58 -0.1 3,580,199 - Echvi_2995 0.58 -1.4 3,580,199 - Echvi_2995 0.58 -0.1 3,580,200 + Echvi_2995 0.59 -1.2 3,580,201 - Echvi_2995 0.59 +1.5 3,580,201 - Echvi_2995 0.59 -0.3 3,580,414 - +0.2 3,580,455 + Echvi_2996 0.10 -1.7 3,580,723 - Echvi_2996 0.23 -0.2 3,580,723 - Echvi_2996 0.23 -0.1 3,580,873 + Echvi_2996 0.30 -0.1 3,580,874 - Echvi_2996 0.30 -1.5 3,581,088 + Echvi_2996 0.40 -1.5 3,581,214 + Echvi_2996 0.46 +0.9 3,581,319 - Echvi_2996 0.51 -0.4 3,581,330 - Echvi_2996 0.51 +0.9 3,581,387 + Echvi_2996 0.54 -0.5 3,581,654 + Echvi_2996 0.66 -0.5 3,581,654 + Echvi_2996 0.66 -0.9 3,581,655 - Echvi_2996 0.67 -2.5 3,581,887 - Echvi_2996 0.77 -0.7 3,581,940 + Echvi_2996 0.80 -1.5 3,582,074 + +0.5 3,582,090 + Echvi_2996 0.87 -1.3 3,582,113 + Echvi_2996 0.88 +1.5 3,582,269 - -1.1 3,582,307 - -0.4 3,582,400 - -0.9 3,582,412 + +1.1 3,582,511 + Echvi_2997 0.13 +0.8 3,582,511 + Echvi_2997 0.13 +0.0 3,582,512 - Echvi_2997 0.13 +0.3 3,582,512 - Echvi_2997 0.13 +0.2 3,582,566 + Echvi_2997 0.19 -0.9 3,582,597 + Echvi_2997 0.23 +0.2 3,582,598 - Echvi_2997 0.23 +1.1 3,582,598 - Echvi_2997 0.23 +0.0 3,582,598 - Echvi_2997 0.23 +0.7 3,582,673 + Echvi_2997 0.31 +1.4 3,582,673 + Echvi_2997 0.31 -1.1 3,582,676 + Echvi_2997 0.32 +0.9 3,582,719 - Echvi_2997 0.36 -0.4 3,582,806 - Echvi_2997 0.46 -0.0 3,582,806 - Echvi_2997 0.46 -0.1 3,582,848 - Echvi_2997 0.51 +1.8 3,582,885 + Echvi_2997 0.55 -1.6 3,582,892 + Echvi_2997 0.56 -2.2 3,582,892 + Echvi_2997 0.56 -0.3 3,582,903 + Echvi_2997 0.57 +0.8 3,582,912 - Echvi_2997 0.58 +0.3 3,582,923 - Echvi_2997 0.60 -0.0 3,582,983 + Echvi_2997 0.66 -0.0 3,583,047 + Echvi_2997 0.74 -0.1 3,583,048 - Echvi_2997 0.74 +0.2 3,583,063 - Echvi_2997 0.75 +0.3 3,583,063 - Echvi_2997 0.75 +0.4 3,583,071 - Echvi_2997 0.76 +0.8 3,583,071 - Echvi_2997 0.76 +0.9 3,583,071 - Echvi_2997 0.76 +0.7 3,583,114 + Echvi_2997 0.81 -0.4 3,583,146 - Echvi_2997 0.85 -0.4 3,583,163 + Echvi_2997 0.87 +0.4 3,583,179 + Echvi_2997 0.89 +1.5 3,583,180 - Echvi_2997 0.89 -0.2 3,583,250 - -0.5 3,583,262 + -0.3 3,583,263 - -0.5 3,583,263 - -0.4 3,583,263 - +0.1 3,583,283 - +1.7 3,583,289 - -0.1 3,583,293 - +0.9 3,583,365 + +0.3
Or see this region's nucleotide sequence