Experiment: m.b. Cobalt chloride 0.8 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2837 and Echvi_2838 overlap by 4 nucleotides Echvi_2838 and Echvi_2839 are separated by 12 nucleotides Echvi_2839 and Echvi_2840 are separated by 55 nucleotides
Echvi_2837: Echvi_2837 - hypothetical protein, at 3,398,279 to 3,399,187
_2837
Echvi_2838: Echvi_2838 - Cytosine/adenosine deaminases, at 3,399,184 to 3,399,621
_2838
Echvi_2839: Echvi_2839 - hypothetical protein, at 3,399,634 to 3,399,825
_2839
Echvi_2840: Echvi_2840 - PAS domain S-box, at 3,399,881 to 3,401,653
_2840
Position (kb)
3399
3400 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3398.652 kb on + strand, within Echvi_2837 at 3398.736 kb on + strand, within Echvi_2837 at 3398.760 kb on + strand, within Echvi_2837 at 3398.761 kb on - strand, within Echvi_2837 at 3398.762 kb on + strand, within Echvi_2837 at 3398.847 kb on + strand, within Echvi_2837 at 3398.848 kb on - strand, within Echvi_2837 at 3398.848 kb on - strand, within Echvi_2837 at 3398.849 kb on + strand, within Echvi_2837 at 3398.868 kb on - strand, within Echvi_2837 at 3398.913 kb on + strand, within Echvi_2837 at 3398.913 kb on + strand, within Echvi_2837 at 3398.914 kb on - strand, within Echvi_2837 at 3398.917 kb on + strand, within Echvi_2837 at 3398.951 kb on + strand, within Echvi_2837 at 3398.951 kb on + strand, within Echvi_2837 at 3399.155 kb on - strand at 3399.299 kb on - strand, within Echvi_2838 at 3399.357 kb on - strand, within Echvi_2838 at 3399.375 kb on + strand, within Echvi_2838 at 3399.483 kb on + strand, within Echvi_2838 at 3399.484 kb on - strand, within Echvi_2838 at 3399.484 kb on - strand, within Echvi_2838 at 3399.507 kb on + strand, within Echvi_2838 at 3399.607 kb on + strand at 3399.607 kb on + strand at 3399.608 kb on - strand at 3399.622 kb on - strand at 3399.631 kb on - strand at 3399.633 kb on - strand at 3399.636 kb on - strand at 3399.636 kb on - strand at 3399.667 kb on + strand, within Echvi_2839 at 3399.667 kb on + strand, within Echvi_2839 at 3399.667 kb on + strand, within Echvi_2839 at 3399.794 kb on - strand, within Echvi_2839 at 3399.815 kb on - strand at 3399.815 kb on - strand at 3399.820 kb on - strand at 3399.848 kb on - strand at 3399.848 kb on - strand at 3399.850 kb on + strand at 3399.856 kb on + strand at 3399.902 kb on + strand at 3399.974 kb on - strand at 3399.981 kb on + strand at 3400.072 kb on - strand, within Echvi_2840 at 3400.092 kb on - strand, within Echvi_2840 at 3400.092 kb on - strand, within Echvi_2840 at 3400.103 kb on - strand, within Echvi_2840 at 3400.108 kb on - strand, within Echvi_2840 at 3400.215 kb on + strand, within Echvi_2840 at 3400.270 kb on - strand, within Echvi_2840 at 3400.275 kb on + strand, within Echvi_2840 at 3400.276 kb on - strand, within Echvi_2840 at 3400.297 kb on + strand, within Echvi_2840 at 3400.316 kb on + strand, within Echvi_2840 at 3400.317 kb on - strand, within Echvi_2840 at 3400.317 kb on - strand, within Echvi_2840 at 3400.317 kb on - strand, within Echvi_2840 at 3400.317 kb on - strand, within Echvi_2840 at 3400.317 kb on - strand, within Echvi_2840 at 3400.317 kb on - strand, within Echvi_2840 at 3400.318 kb on + strand, within Echvi_2840 at 3400.319 kb on - strand, within Echvi_2840 at 3400.327 kb on + strand, within Echvi_2840 at 3400.340 kb on + strand, within Echvi_2840 at 3400.364 kb on + strand, within Echvi_2840 at 3400.364 kb on + strand, within Echvi_2840 at 3400.364 kb on + strand, within Echvi_2840 at 3400.365 kb on - strand, within Echvi_2840 at 3400.390 kb on + strand, within Echvi_2840 at 3400.391 kb on - strand, within Echvi_2840 at 3400.403 kb on + strand, within Echvi_2840 at 3400.404 kb on - strand, within Echvi_2840 at 3400.520 kb on - strand, within Echvi_2840 at 3400.520 kb on - strand, within Echvi_2840 at 3400.575 kb on + strand, within Echvi_2840 at 3400.629 kb on + strand, within Echvi_2840 at 3400.650 kb on + strand, within Echvi_2840 at 3400.650 kb on + strand, within Echvi_2840 at 3400.651 kb on - strand, within Echvi_2840 at 3400.659 kb on + strand, within Echvi_2840 at 3400.660 kb on - strand, within Echvi_2840 at 3400.687 kb on + strand, within Echvi_2840 at 3400.713 kb on + strand, within Echvi_2840 at 3400.713 kb on + strand, within Echvi_2840 at 3400.713 kb on + strand, within Echvi_2840 at 3400.714 kb on - strand, within Echvi_2840 at 3400.714 kb on - strand, within Echvi_2840 at 3400.714 kb on - strand, within Echvi_2840 at 3400.714 kb on - strand, within Echvi_2840 at 3400.719 kb on + strand, within Echvi_2840 at 3400.719 kb on + strand, within Echvi_2840 at 3400.720 kb on - strand, within Echvi_2840 at 3400.720 kb on - strand, within Echvi_2840 at 3400.729 kb on - strand, within Echvi_2840 at 3400.821 kb on - strand, within Echvi_2840
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.8 mM remove 3,398,652 + Echvi_2837 0.41 -0.0 3,398,736 + Echvi_2837 0.50 -0.0 3,398,760 + Echvi_2837 0.53 +0.9 3,398,761 - Echvi_2837 0.53 +0.3 3,398,762 + Echvi_2837 0.53 -0.4 3,398,847 + Echvi_2837 0.62 -0.8 3,398,848 - Echvi_2837 0.63 +2.3 3,398,848 - Echvi_2837 0.63 -1.2 3,398,849 + Echvi_2837 0.63 +1.4 3,398,868 - Echvi_2837 0.65 +0.1 3,398,913 + Echvi_2837 0.70 -1.0 3,398,913 + Echvi_2837 0.70 +0.3 3,398,914 - Echvi_2837 0.70 -0.6 3,398,917 + Echvi_2837 0.70 -1.3 3,398,951 + Echvi_2837 0.74 -3.0 3,398,951 + Echvi_2837 0.74 -0.7 3,399,155 - -0.5 3,399,299 - Echvi_2838 0.26 -0.4 3,399,357 - Echvi_2838 0.39 -0.2 3,399,375 + Echvi_2838 0.44 +2.0 3,399,483 + Echvi_2838 0.68 +0.1 3,399,484 - Echvi_2838 0.68 +1.0 3,399,484 - Echvi_2838 0.68 +1.2 3,399,507 + Echvi_2838 0.74 -0.8 3,399,607 + -0.9 3,399,607 + +1.2 3,399,608 - -0.6 3,399,622 - -0.1 3,399,631 - +1.2 3,399,633 - +0.3 3,399,636 - +0.3 3,399,636 - +0.4 3,399,667 + Echvi_2839 0.17 -1.3 3,399,667 + Echvi_2839 0.17 +1.0 3,399,667 + Echvi_2839 0.17 -0.6 3,399,794 - Echvi_2839 0.83 -0.1 3,399,815 - +0.0 3,399,815 - +0.2 3,399,820 - -1.1 3,399,848 - +0.0 3,399,848 - -0.2 3,399,850 + +0.2 3,399,856 + -0.2 3,399,902 + +0.2 3,399,974 - +1.3 3,399,981 + +3.0 3,400,072 - Echvi_2840 0.11 +0.2 3,400,092 - Echvi_2840 0.12 +0.1 3,400,092 - Echvi_2840 0.12 +0.2 3,400,103 - Echvi_2840 0.13 +0.8 3,400,108 - Echvi_2840 0.13 +1.2 3,400,215 + Echvi_2840 0.19 +0.7 3,400,270 - Echvi_2840 0.22 +0.6 3,400,275 + Echvi_2840 0.22 -0.9 3,400,276 - Echvi_2840 0.22 +0.6 3,400,297 + Echvi_2840 0.23 -1.3 3,400,316 + Echvi_2840 0.25 -0.8 3,400,317 - Echvi_2840 0.25 -0.8 3,400,317 - Echvi_2840 0.25 +0.2 3,400,317 - Echvi_2840 0.25 +0.2 3,400,317 - Echvi_2840 0.25 -1.1 3,400,317 - Echvi_2840 0.25 +0.9 3,400,317 - Echvi_2840 0.25 +0.6 3,400,318 + Echvi_2840 0.25 +0.5 3,400,319 - Echvi_2840 0.25 +0.3 3,400,327 + Echvi_2840 0.25 +0.9 3,400,340 + Echvi_2840 0.26 +0.4 3,400,364 + Echvi_2840 0.27 +0.3 3,400,364 + Echvi_2840 0.27 +0.8 3,400,364 + Echvi_2840 0.27 +1.0 3,400,365 - Echvi_2840 0.27 -0.6 3,400,390 + Echvi_2840 0.29 +0.1 3,400,391 - Echvi_2840 0.29 +0.0 3,400,403 + Echvi_2840 0.29 -0.3 3,400,404 - Echvi_2840 0.29 +0.7 3,400,520 - Echvi_2840 0.36 -0.7 3,400,520 - Echvi_2840 0.36 +1.8 3,400,575 + Echvi_2840 0.39 -0.5 3,400,629 + Echvi_2840 0.42 -0.5 3,400,650 + Echvi_2840 0.43 -1.7 3,400,650 + Echvi_2840 0.43 +0.5 3,400,651 - Echvi_2840 0.43 -1.9 3,400,659 + Echvi_2840 0.44 -1.6 3,400,660 - Echvi_2840 0.44 +0.3 3,400,687 + Echvi_2840 0.45 +1.7 3,400,713 + Echvi_2840 0.47 -1.3 3,400,713 + Echvi_2840 0.47 +0.2 3,400,713 + Echvi_2840 0.47 +0.2 3,400,714 - Echvi_2840 0.47 +0.8 3,400,714 - Echvi_2840 0.47 -0.1 3,400,714 - Echvi_2840 0.47 +0.9 3,400,714 - Echvi_2840 0.47 -0.3 3,400,719 + Echvi_2840 0.47 -0.0 3,400,719 + Echvi_2840 0.47 -0.2 3,400,720 - Echvi_2840 0.47 +0.5 3,400,720 - Echvi_2840 0.47 -0.3 3,400,729 - Echvi_2840 0.48 -0.2 3,400,821 - Echvi_2840 0.53 +0.2
Or see this region's nucleotide sequence