Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2839

Experiment: m.b. Cobalt chloride 0.8 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_2837 and Echvi_2838 overlap by 4 nucleotidesEchvi_2838 and Echvi_2839 are separated by 12 nucleotidesEchvi_2839 and Echvi_2840 are separated by 55 nucleotides Echvi_2837: Echvi_2837 - hypothetical protein, at 3,398,279 to 3,399,187 _2837 Echvi_2838: Echvi_2838 - Cytosine/adenosine deaminases, at 3,399,184 to 3,399,621 _2838 Echvi_2839: Echvi_2839 - hypothetical protein, at 3,399,634 to 3,399,825 _2839 Echvi_2840: Echvi_2840 - PAS domain S-box, at 3,399,881 to 3,401,653 _2840 Position (kb) 3399 3400Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3398.652 kb on + strand, within Echvi_2837at 3398.736 kb on + strand, within Echvi_2837at 3398.760 kb on + strand, within Echvi_2837at 3398.761 kb on - strand, within Echvi_2837at 3398.762 kb on + strand, within Echvi_2837at 3398.847 kb on + strand, within Echvi_2837at 3398.848 kb on - strand, within Echvi_2837at 3398.848 kb on - strand, within Echvi_2837at 3398.849 kb on + strand, within Echvi_2837at 3398.868 kb on - strand, within Echvi_2837at 3398.913 kb on + strand, within Echvi_2837at 3398.913 kb on + strand, within Echvi_2837at 3398.914 kb on - strand, within Echvi_2837at 3398.917 kb on + strand, within Echvi_2837at 3398.951 kb on + strand, within Echvi_2837at 3398.951 kb on + strand, within Echvi_2837at 3399.155 kb on - strandat 3399.299 kb on - strand, within Echvi_2838at 3399.357 kb on - strand, within Echvi_2838at 3399.375 kb on + strand, within Echvi_2838at 3399.483 kb on + strand, within Echvi_2838at 3399.484 kb on - strand, within Echvi_2838at 3399.484 kb on - strand, within Echvi_2838at 3399.507 kb on + strand, within Echvi_2838at 3399.607 kb on + strandat 3399.607 kb on + strandat 3399.608 kb on - strandat 3399.622 kb on - strandat 3399.631 kb on - strandat 3399.633 kb on - strandat 3399.636 kb on - strandat 3399.636 kb on - strandat 3399.667 kb on + strand, within Echvi_2839at 3399.667 kb on + strand, within Echvi_2839at 3399.667 kb on + strand, within Echvi_2839at 3399.794 kb on - strand, within Echvi_2839at 3399.815 kb on - strandat 3399.815 kb on - strandat 3399.820 kb on - strandat 3399.848 kb on - strandat 3399.848 kb on - strandat 3399.850 kb on + strandat 3399.856 kb on + strandat 3399.902 kb on + strandat 3399.974 kb on - strandat 3399.981 kb on + strandat 3400.072 kb on - strand, within Echvi_2840at 3400.092 kb on - strand, within Echvi_2840at 3400.092 kb on - strand, within Echvi_2840at 3400.103 kb on - strand, within Echvi_2840at 3400.108 kb on - strand, within Echvi_2840at 3400.215 kb on + strand, within Echvi_2840at 3400.270 kb on - strand, within Echvi_2840at 3400.275 kb on + strand, within Echvi_2840at 3400.276 kb on - strand, within Echvi_2840at 3400.297 kb on + strand, within Echvi_2840at 3400.316 kb on + strand, within Echvi_2840at 3400.317 kb on - strand, within Echvi_2840at 3400.317 kb on - strand, within Echvi_2840at 3400.317 kb on - strand, within Echvi_2840at 3400.317 kb on - strand, within Echvi_2840at 3400.317 kb on - strand, within Echvi_2840at 3400.317 kb on - strand, within Echvi_2840at 3400.318 kb on + strand, within Echvi_2840at 3400.319 kb on - strand, within Echvi_2840at 3400.327 kb on + strand, within Echvi_2840at 3400.340 kb on + strand, within Echvi_2840at 3400.364 kb on + strand, within Echvi_2840at 3400.364 kb on + strand, within Echvi_2840at 3400.364 kb on + strand, within Echvi_2840at 3400.365 kb on - strand, within Echvi_2840at 3400.390 kb on + strand, within Echvi_2840at 3400.391 kb on - strand, within Echvi_2840at 3400.403 kb on + strand, within Echvi_2840at 3400.404 kb on - strand, within Echvi_2840at 3400.520 kb on - strand, within Echvi_2840at 3400.520 kb on - strand, within Echvi_2840at 3400.575 kb on + strand, within Echvi_2840at 3400.629 kb on + strand, within Echvi_2840at 3400.650 kb on + strand, within Echvi_2840at 3400.650 kb on + strand, within Echvi_2840at 3400.651 kb on - strand, within Echvi_2840at 3400.659 kb on + strand, within Echvi_2840at 3400.660 kb on - strand, within Echvi_2840at 3400.687 kb on + strand, within Echvi_2840at 3400.713 kb on + strand, within Echvi_2840at 3400.713 kb on + strand, within Echvi_2840at 3400.713 kb on + strand, within Echvi_2840at 3400.714 kb on - strand, within Echvi_2840at 3400.714 kb on - strand, within Echvi_2840at 3400.714 kb on - strand, within Echvi_2840at 3400.714 kb on - strand, within Echvi_2840at 3400.719 kb on + strand, within Echvi_2840at 3400.719 kb on + strand, within Echvi_2840at 3400.720 kb on - strand, within Echvi_2840at 3400.720 kb on - strand, within Echvi_2840at 3400.729 kb on - strand, within Echvi_2840at 3400.821 kb on - strand, within Echvi_2840

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.8 mM
remove
3,398,652 + Echvi_2837 0.41 -0.0
3,398,736 + Echvi_2837 0.50 -0.0
3,398,760 + Echvi_2837 0.53 +0.9
3,398,761 - Echvi_2837 0.53 +0.3
3,398,762 + Echvi_2837 0.53 -0.4
3,398,847 + Echvi_2837 0.62 -0.8
3,398,848 - Echvi_2837 0.63 +2.3
3,398,848 - Echvi_2837 0.63 -1.2
3,398,849 + Echvi_2837 0.63 +1.4
3,398,868 - Echvi_2837 0.65 +0.1
3,398,913 + Echvi_2837 0.70 -1.0
3,398,913 + Echvi_2837 0.70 +0.3
3,398,914 - Echvi_2837 0.70 -0.6
3,398,917 + Echvi_2837 0.70 -1.3
3,398,951 + Echvi_2837 0.74 -3.0
3,398,951 + Echvi_2837 0.74 -0.7
3,399,155 - -0.5
3,399,299 - Echvi_2838 0.26 -0.4
3,399,357 - Echvi_2838 0.39 -0.2
3,399,375 + Echvi_2838 0.44 +2.0
3,399,483 + Echvi_2838 0.68 +0.1
3,399,484 - Echvi_2838 0.68 +1.0
3,399,484 - Echvi_2838 0.68 +1.2
3,399,507 + Echvi_2838 0.74 -0.8
3,399,607 + -0.9
3,399,607 + +1.2
3,399,608 - -0.6
3,399,622 - -0.1
3,399,631 - +1.2
3,399,633 - +0.3
3,399,636 - +0.3
3,399,636 - +0.4
3,399,667 + Echvi_2839 0.17 -1.3
3,399,667 + Echvi_2839 0.17 +1.0
3,399,667 + Echvi_2839 0.17 -0.6
3,399,794 - Echvi_2839 0.83 -0.1
3,399,815 - +0.0
3,399,815 - +0.2
3,399,820 - -1.1
3,399,848 - +0.0
3,399,848 - -0.2
3,399,850 + +0.2
3,399,856 + -0.2
3,399,902 + +0.2
3,399,974 - +1.3
3,399,981 + +3.0
3,400,072 - Echvi_2840 0.11 +0.2
3,400,092 - Echvi_2840 0.12 +0.1
3,400,092 - Echvi_2840 0.12 +0.2
3,400,103 - Echvi_2840 0.13 +0.8
3,400,108 - Echvi_2840 0.13 +1.2
3,400,215 + Echvi_2840 0.19 +0.7
3,400,270 - Echvi_2840 0.22 +0.6
3,400,275 + Echvi_2840 0.22 -0.9
3,400,276 - Echvi_2840 0.22 +0.6
3,400,297 + Echvi_2840 0.23 -1.3
3,400,316 + Echvi_2840 0.25 -0.8
3,400,317 - Echvi_2840 0.25 -0.8
3,400,317 - Echvi_2840 0.25 +0.2
3,400,317 - Echvi_2840 0.25 +0.2
3,400,317 - Echvi_2840 0.25 -1.1
3,400,317 - Echvi_2840 0.25 +0.9
3,400,317 - Echvi_2840 0.25 +0.6
3,400,318 + Echvi_2840 0.25 +0.5
3,400,319 - Echvi_2840 0.25 +0.3
3,400,327 + Echvi_2840 0.25 +0.9
3,400,340 + Echvi_2840 0.26 +0.4
3,400,364 + Echvi_2840 0.27 +0.3
3,400,364 + Echvi_2840 0.27 +0.8
3,400,364 + Echvi_2840 0.27 +1.0
3,400,365 - Echvi_2840 0.27 -0.6
3,400,390 + Echvi_2840 0.29 +0.1
3,400,391 - Echvi_2840 0.29 +0.0
3,400,403 + Echvi_2840 0.29 -0.3
3,400,404 - Echvi_2840 0.29 +0.7
3,400,520 - Echvi_2840 0.36 -0.7
3,400,520 - Echvi_2840 0.36 +1.8
3,400,575 + Echvi_2840 0.39 -0.5
3,400,629 + Echvi_2840 0.42 -0.5
3,400,650 + Echvi_2840 0.43 -1.7
3,400,650 + Echvi_2840 0.43 +0.5
3,400,651 - Echvi_2840 0.43 -1.9
3,400,659 + Echvi_2840 0.44 -1.6
3,400,660 - Echvi_2840 0.44 +0.3
3,400,687 + Echvi_2840 0.45 +1.7
3,400,713 + Echvi_2840 0.47 -1.3
3,400,713 + Echvi_2840 0.47 +0.2
3,400,713 + Echvi_2840 0.47 +0.2
3,400,714 - Echvi_2840 0.47 +0.8
3,400,714 - Echvi_2840 0.47 -0.1
3,400,714 - Echvi_2840 0.47 +0.9
3,400,714 - Echvi_2840 0.47 -0.3
3,400,719 + Echvi_2840 0.47 -0.0
3,400,719 + Echvi_2840 0.47 -0.2
3,400,720 - Echvi_2840 0.47 +0.5
3,400,720 - Echvi_2840 0.47 -0.3
3,400,729 - Echvi_2840 0.48 -0.2
3,400,821 - Echvi_2840 0.53 +0.2

Or see this region's nucleotide sequence