Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2606

Experiment: m.b. Cobalt chloride 0.8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2605 and Echvi_2606 are separated by 670 nucleotidesEchvi_2606 and Echvi_2607 are separated by 88 nucleotides Echvi_2605: Echvi_2605 - Glycosyltransferase, at 3,086,876 to 3,088,006 _2605 Echvi_2606: Echvi_2606 - hypothetical protein, at 3,088,677 to 3,088,838 _2606 Echvi_2607: Echvi_2607 - Transposase and inactivated derivatives, at 3,088,927 to 3,089,382 _2607 Position (kb) 3088 3089Strain fitness (log2 ratio) -2 -1 0 1 2at 3087.698 kb on + strand, within Echvi_2605at 3087.698 kb on + strand, within Echvi_2605at 3087.792 kb on + strand, within Echvi_2605at 3087.792 kb on + strand, within Echvi_2605at 3087.892 kb on - strand, within Echvi_2605at 3087.913 kb on + strandat 3087.914 kb on - strandat 3087.914 kb on - strandat 3087.961 kb on + strandat 3087.961 kb on + strandat 3087.961 kb on + strandat 3087.962 kb on - strandat 3088.005 kb on - strandat 3088.005 kb on - strandat 3088.032 kb on + strandat 3088.033 kb on - strandat 3088.033 kb on - strandat 3088.173 kb on + strandat 3088.173 kb on + strandat 3088.173 kb on + strandat 3088.401 kb on - strandat 3088.401 kb on - strandat 3088.405 kb on + strandat 3088.405 kb on + strandat 3088.406 kb on - strandat 3088.406 kb on - strandat 3088.416 kb on + strandat 3088.417 kb on - strandat 3088.417 kb on - strandat 3088.444 kb on - strandat 3088.444 kb on - strandat 3088.735 kb on + strand, within Echvi_2606at 3088.838 kb on + strandat 3088.891 kb on - strandat 3088.917 kb on - strandat 3088.951 kb on + strandat 3088.966 kb on + strandat 3088.966 kb on + strandat 3088.973 kb on + strand, within Echvi_2607at 3088.973 kb on + strand, within Echvi_2607at 3088.973 kb on + strand, within Echvi_2607at 3088.974 kb on - strand, within Echvi_2607at 3088.981 kb on - strand, within Echvi_2607at 3089.020 kb on + strand, within Echvi_2607at 3089.021 kb on - strand, within Echvi_2607at 3089.021 kb on - strand, within Echvi_2607at 3089.021 kb on - strand, within Echvi_2607at 3089.021 kb on - strand, within Echvi_2607at 3089.021 kb on - strand, within Echvi_2607at 3089.021 kb on - strand, within Echvi_2607at 3089.026 kb on + strand, within Echvi_2607at 3089.026 kb on + strand, within Echvi_2607at 3089.027 kb on - strand, within Echvi_2607at 3089.027 kb on - strand, within Echvi_2607at 3089.043 kb on - strand, within Echvi_2607at 3089.043 kb on - strand, within Echvi_2607at 3089.043 kb on - strand, within Echvi_2607at 3089.072 kb on + strand, within Echvi_2607at 3089.072 kb on + strand, within Echvi_2607at 3089.073 kb on - strand, within Echvi_2607at 3089.073 kb on - strand, within Echvi_2607at 3089.073 kb on - strand, within Echvi_2607at 3089.073 kb on - strand, within Echvi_2607at 3089.073 kb on - strand, within Echvi_2607at 3089.123 kb on + strand, within Echvi_2607at 3089.140 kb on - strand, within Echvi_2607at 3089.151 kb on - strand, within Echvi_2607at 3089.160 kb on + strand, within Echvi_2607at 3089.161 kb on - strand, within Echvi_2607at 3089.161 kb on - strand, within Echvi_2607at 3089.175 kb on + strand, within Echvi_2607at 3089.176 kb on - strand, within Echvi_2607at 3089.183 kb on + strand, within Echvi_2607at 3089.190 kb on + strand, within Echvi_2607at 3089.191 kb on - strand, within Echvi_2607at 3089.195 kb on - strand, within Echvi_2607at 3089.222 kb on - strand, within Echvi_2607at 3089.222 kb on - strand, within Echvi_2607at 3089.250 kb on - strand, within Echvi_2607at 3089.250 kb on - strand, within Echvi_2607at 3089.320 kb on + strand, within Echvi_2607at 3089.320 kb on + strand, within Echvi_2607at 3089.320 kb on + strand, within Echvi_2607at 3089.320 kb on + strand, within Echvi_2607at 3089.321 kb on - strand, within Echvi_2607at 3089.322 kb on + strand, within Echvi_2607at 3089.323 kb on - strand, within Echvi_2607at 3089.341 kb on + strandat 3089.342 kb on - strandat 3089.390 kb on + strandat 3089.392 kb on + strandat 3089.398 kb on + strandat 3089.399 kb on - strandat 3089.450 kb on - strandat 3089.561 kb on - strandat 3089.616 kb on - strandat 3089.680 kb on - strandat 3089.772 kb on - strandat 3089.812 kb on + strandat 3089.812 kb on + strandat 3089.814 kb on + strandat 3089.826 kb on + strandat 3089.826 kb on + strandat 3089.827 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.8 mM
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3,087,698 + Echvi_2605 0.73 -0.7
3,087,698 + Echvi_2605 0.73 -0.4
3,087,792 + Echvi_2605 0.81 -0.4
3,087,792 + Echvi_2605 0.81 -0.2
3,087,892 - Echvi_2605 0.90 +1.0
3,087,913 + +0.2
3,087,914 - +0.4
3,087,914 - -1.7
3,087,961 + -0.5
3,087,961 + -1.2
3,087,961 + -0.4
3,087,962 - +2.6
3,088,005 - +0.1
3,088,005 - -0.6
3,088,032 + +0.9
3,088,033 - -0.6
3,088,033 - +2.4
3,088,173 + -1.4
3,088,173 + +0.5
3,088,173 + +0.5
3,088,401 - -0.4
3,088,401 - -0.6
3,088,405 + +0.2
3,088,405 + +1.3
3,088,406 - -0.4
3,088,406 - -0.6
3,088,416 + -0.1
3,088,417 - -0.6
3,088,417 - -0.3
3,088,444 - -0.2
3,088,444 - -0.6
3,088,735 + Echvi_2606 0.36 -0.8
3,088,838 + +0.7
3,088,891 - -0.4
3,088,917 - -0.2
3,088,951 + -0.4
3,088,966 + -0.5
3,088,966 + -0.2
3,088,973 + Echvi_2607 0.10 +0.2
3,088,973 + Echvi_2607 0.10 +0.4
3,088,973 + Echvi_2607 0.10 -0.5
3,088,974 - Echvi_2607 0.10 +0.1
3,088,981 - Echvi_2607 0.12 -0.1
3,089,020 + Echvi_2607 0.20 +0.2
3,089,021 - Echvi_2607 0.21 +0.4
3,089,021 - Echvi_2607 0.21 +0.3
3,089,021 - Echvi_2607 0.21 -0.8
3,089,021 - Echvi_2607 0.21 -0.4
3,089,021 - Echvi_2607 0.21 +0.1
3,089,021 - Echvi_2607 0.21 +0.3
3,089,026 + Echvi_2607 0.22 +0.3
3,089,026 + Echvi_2607 0.22 +0.3
3,089,027 - Echvi_2607 0.22 -0.3
3,089,027 - Echvi_2607 0.22 -0.1
3,089,043 - Echvi_2607 0.25 +0.3
3,089,043 - Echvi_2607 0.25 -1.1
3,089,043 - Echvi_2607 0.25 -0.5
3,089,072 + Echvi_2607 0.32 +0.6
3,089,072 + Echvi_2607 0.32 -0.3
3,089,073 - Echvi_2607 0.32 -1.3
3,089,073 - Echvi_2607 0.32 -0.6
3,089,073 - Echvi_2607 0.32 +0.2
3,089,073 - Echvi_2607 0.32 +0.1
3,089,073 - Echvi_2607 0.32 +0.0
3,089,123 + Echvi_2607 0.43 -0.0
3,089,140 - Echvi_2607 0.47 -0.7
3,089,151 - Echvi_2607 0.49 -0.1
3,089,160 + Echvi_2607 0.51 +1.1
3,089,161 - Echvi_2607 0.51 -0.2
3,089,161 - Echvi_2607 0.51 -0.6
3,089,175 + Echvi_2607 0.54 +0.7
3,089,176 - Echvi_2607 0.55 +0.3
3,089,183 + Echvi_2607 0.56 -0.1
3,089,190 + Echvi_2607 0.58 +0.6
3,089,191 - Echvi_2607 0.58 +0.4
3,089,195 - Echvi_2607 0.59 +0.2
3,089,222 - Echvi_2607 0.65 -1.5
3,089,222 - Echvi_2607 0.65 +0.2
3,089,250 - Echvi_2607 0.71 -1.0
3,089,250 - Echvi_2607 0.71 -1.1
3,089,320 + Echvi_2607 0.86 -1.4
3,089,320 + Echvi_2607 0.86 +0.5
3,089,320 + Echvi_2607 0.86 -1.3
3,089,320 + Echvi_2607 0.86 -0.4
3,089,321 - Echvi_2607 0.86 +1.3
3,089,322 + Echvi_2607 0.87 +0.3
3,089,323 - Echvi_2607 0.87 -0.2
3,089,341 + -0.2
3,089,342 - -0.9
3,089,390 + -1.9
3,089,392 + +0.3
3,089,398 + -0.4
3,089,399 - -0.2
3,089,450 - -0.4
3,089,561 - +0.4
3,089,616 - +2.2
3,089,680 - -1.1
3,089,772 - +0.1
3,089,812 + -0.6
3,089,812 + +0.8
3,089,814 + -0.4
3,089,826 + -1.4
3,089,826 + -0.1
3,089,827 - -2.6

Or see this region's nucleotide sequence