Experiment: m.b. Cobalt chloride 0.8 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2441 and Echvi_2442 are separated by 50 nucleotides Echvi_2442 and Echvi_2443 overlap by 4 nucleotides Echvi_2443 and Echvi_2444 are separated by 27 nucleotides
Echvi_2441: Echvi_2441 - Methylmalonyl-CoA mutase, N-terminal domain/subunit, at 2,897,257 to 2,900,634
_2441
Echvi_2442: Echvi_2442 - Predicted redox protein, regulator of disulfide bond formation, at 2,900,685 to 2,901,098
_2442
Echvi_2443: Echvi_2443 - hypothetical protein, at 2,901,095 to 2,901,334
_2443
Echvi_2444: Echvi_2444 - Predicted cysteine protease (OTU family), at 2,901,362 to 2,902,372
_2444
Position (kb)
2900
2901
2902 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2899.687 kb on + strand, within Echvi_2441 at 2899.756 kb on + strand, within Echvi_2441 at 2899.766 kb on - strand, within Echvi_2441 at 2899.769 kb on - strand, within Echvi_2441 at 2899.790 kb on + strand, within Echvi_2441 at 2899.790 kb on + strand, within Echvi_2441 at 2899.790 kb on + strand, within Echvi_2441 at 2899.790 kb on + strand at 2899.790 kb on + strand, within Echvi_2441 at 2899.806 kb on + strand at 2899.812 kb on - strand, within Echvi_2441 at 2899.898 kb on + strand, within Echvi_2441 at 2899.898 kb on + strand, within Echvi_2441 at 2899.898 kb on + strand, within Echvi_2441 at 2899.936 kb on + strand, within Echvi_2441 at 2899.937 kb on - strand, within Echvi_2441 at 2899.937 kb on - strand, within Echvi_2441 at 2899.998 kb on + strand, within Echvi_2441 at 2899.999 kb on - strand, within Echvi_2441 at 2900.027 kb on - strand, within Echvi_2441 at 2900.037 kb on + strand, within Echvi_2441 at 2900.049 kb on + strand, within Echvi_2441 at 2900.049 kb on + strand, within Echvi_2441 at 2900.050 kb on - strand, within Echvi_2441 at 2900.060 kb on - strand, within Echvi_2441 at 2900.083 kb on - strand, within Echvi_2441 at 2900.130 kb on + strand, within Echvi_2441 at 2900.178 kb on + strand, within Echvi_2441 at 2900.178 kb on + strand, within Echvi_2441 at 2900.178 kb on + strand, within Echvi_2441 at 2900.218 kb on + strand, within Echvi_2441 at 2900.219 kb on - strand, within Echvi_2441 at 2900.295 kb on - strand, within Echvi_2441 at 2900.295 kb on - strand, within Echvi_2441 at 2900.309 kb on + strand at 2900.310 kb on - strand at 2900.314 kb on + strand at 2900.338 kb on - strand at 2900.342 kb on - strand at 2900.351 kb on + strand at 2900.361 kb on + strand at 2900.361 kb on + strand at 2900.412 kb on + strand at 2900.523 kb on + strand at 2900.523 kb on + strand at 2900.550 kb on + strand at 2900.551 kb on - strand at 2900.551 kb on - strand at 2900.586 kb on + strand at 2900.633 kb on - strand at 2900.658 kb on + strand at 2900.659 kb on - strand at 2900.667 kb on + strand at 2900.731 kb on - strand, within Echvi_2442 at 2900.767 kb on + strand, within Echvi_2442 at 2900.767 kb on + strand, within Echvi_2442 at 2900.767 kb on + strand, within Echvi_2442 at 2900.768 kb on - strand, within Echvi_2442 at 2900.768 kb on - strand, within Echvi_2442 at 2900.771 kb on + strand, within Echvi_2442 at 2900.771 kb on + strand, within Echvi_2442 at 2900.771 kb on + strand, within Echvi_2442 at 2900.771 kb on + strand, within Echvi_2442 at 2900.771 kb on + strand, within Echvi_2442 at 2900.771 kb on + strand, within Echvi_2442 at 2900.771 kb on + strand, within Echvi_2442 at 2900.771 kb on + strand, within Echvi_2442 at 2900.771 kb on + strand, within Echvi_2442 at 2900.771 kb on + strand, within Echvi_2442 at 2900.771 kb on + strand, within Echvi_2442 at 2900.771 kb on + strand, within Echvi_2442 at 2900.771 kb on + strand, within Echvi_2442 at 2900.772 kb on - strand, within Echvi_2442 at 2900.772 kb on - strand, within Echvi_2442 at 2900.772 kb on - strand, within Echvi_2442 at 2900.775 kb on + strand, within Echvi_2442 at 2900.775 kb on + strand, within Echvi_2442 at 2900.775 kb on + strand, within Echvi_2442 at 2900.775 kb on + strand, within Echvi_2442 at 2900.775 kb on + strand, within Echvi_2442 at 2900.775 kb on + strand, within Echvi_2442 at 2900.775 kb on + strand, within Echvi_2442 at 2900.775 kb on + strand, within Echvi_2442 at 2900.775 kb on + strand, within Echvi_2442 at 2900.775 kb on + strand, within Echvi_2442 at 2900.775 kb on + strand, within Echvi_2442 at 2900.776 kb on - strand, within Echvi_2442 at 2900.776 kb on - strand, within Echvi_2442 at 2900.776 kb on - strand, within Echvi_2442 at 2900.807 kb on + strand, within Echvi_2442 at 2900.807 kb on + strand, within Echvi_2442 at 2900.807 kb on + strand, within Echvi_2442 at 2900.819 kb on - strand, within Echvi_2442 at 2900.848 kb on + strand, within Echvi_2442 at 2900.848 kb on + strand, within Echvi_2442 at 2900.897 kb on + strand, within Echvi_2442 at 2900.898 kb on - strand, within Echvi_2442 at 2900.902 kb on + strand, within Echvi_2442 at 2900.903 kb on - strand, within Echvi_2442 at 2900.943 kb on + strand, within Echvi_2442 at 2900.943 kb on + strand, within Echvi_2442 at 2900.943 kb on + strand, within Echvi_2442 at 2900.944 kb on - strand, within Echvi_2442 at 2900.944 kb on - strand, within Echvi_2442 at 2900.945 kb on + strand, within Echvi_2442 at 2900.945 kb on + strand, within Echvi_2442 at 2900.946 kb on - strand, within Echvi_2442 at 2901.029 kb on + strand, within Echvi_2442 at 2901.029 kb on + strand, within Echvi_2442 at 2901.029 kb on + strand, within Echvi_2442 at 2901.033 kb on + strand, within Echvi_2442 at 2901.033 kb on + strand, within Echvi_2442 at 2901.033 kb on + strand, within Echvi_2442 at 2901.033 kb on + strand, within Echvi_2442 at 2901.033 kb on + strand, within Echvi_2442 at 2901.033 kb on + strand, within Echvi_2442 at 2901.034 kb on - strand, within Echvi_2442 at 2901.034 kb on - strand, within Echvi_2442 at 2901.072 kb on + strand at 2901.073 kb on - strand at 2901.075 kb on - strand at 2901.161 kb on + strand, within Echvi_2443 at 2901.162 kb on - strand, within Echvi_2443 at 2901.162 kb on - strand, within Echvi_2443 at 2901.162 kb on - strand, within Echvi_2443 at 2901.173 kb on + strand, within Echvi_2443 at 2901.174 kb on - strand, within Echvi_2443 at 2901.200 kb on + strand, within Echvi_2443 at 2901.201 kb on - strand, within Echvi_2443 at 2901.329 kb on - strand at 2901.353 kb on + strand at 2901.353 kb on + strand at 2901.360 kb on - strand at 2901.368 kb on + strand at 2901.368 kb on + strand at 2901.374 kb on + strand at 2901.409 kb on + strand at 2901.418 kb on + strand at 2901.418 kb on + strand at 2901.438 kb on + strand at 2901.439 kb on - strand at 2901.439 kb on - strand at 2901.439 kb on - strand at 2901.439 kb on - strand at 2901.440 kb on + strand at 2901.440 kb on + strand at 2901.440 kb on + strand at 2901.441 kb on - strand at 2901.441 kb on - strand at 2901.442 kb on + strand at 2901.442 kb on + strand at 2901.442 kb on + strand at 2901.442 kb on + strand at 2901.442 kb on + strand at 2901.442 kb on + strand at 2901.442 kb on + strand at 2901.442 kb on + strand at 2901.442 kb on + strand at 2901.443 kb on - strand at 2901.445 kb on + strand at 2901.446 kb on - strand at 2901.469 kb on + strand, within Echvi_2444 at 2901.469 kb on + strand, within Echvi_2444 at 2901.542 kb on + strand, within Echvi_2444 at 2901.566 kb on + strand, within Echvi_2444 at 2901.567 kb on - strand, within Echvi_2444 at 2901.618 kb on + strand, within Echvi_2444 at 2901.618 kb on + strand, within Echvi_2444 at 2901.620 kb on + strand, within Echvi_2444 at 2901.621 kb on - strand, within Echvi_2444 at 2901.649 kb on + strand, within Echvi_2444 at 2901.649 kb on + strand, within Echvi_2444 at 2901.650 kb on - strand, within Echvi_2444 at 2901.650 kb on - strand, within Echvi_2444 at 2901.650 kb on - strand, within Echvi_2444 at 2901.667 kb on + strand, within Echvi_2444 at 2901.667 kb on + strand, within Echvi_2444 at 2901.667 kb on + strand, within Echvi_2444 at 2901.704 kb on + strand, within Echvi_2444 at 2901.705 kb on - strand, within Echvi_2444 at 2901.743 kb on + strand, within Echvi_2444 at 2901.743 kb on + strand, within Echvi_2444 at 2901.779 kb on - strand, within Echvi_2444 at 2901.795 kb on + strand, within Echvi_2444 at 2901.795 kb on + strand, within Echvi_2444 at 2901.796 kb on - strand, within Echvi_2444 at 2901.799 kb on + strand, within Echvi_2444 at 2901.853 kb on + strand, within Echvi_2444 at 2901.853 kb on + strand, within Echvi_2444 at 2901.925 kb on + strand, within Echvi_2444 at 2901.925 kb on + strand, within Echvi_2444 at 2901.925 kb on + strand, within Echvi_2444 at 2901.926 kb on - strand, within Echvi_2444 at 2901.929 kb on + strand, within Echvi_2444 at 2901.996 kb on + strand, within Echvi_2444 at 2902.026 kb on + strand, within Echvi_2444 at 2902.079 kb on - strand, within Echvi_2444 at 2902.080 kb on + strand, within Echvi_2444 at 2902.080 kb on + strand, within Echvi_2444 at 2902.080 kb on + strand, within Echvi_2444 at 2902.080 kb on + strand, within Echvi_2444
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.8 mM remove 2,899,687 + Echvi_2441 0.72 +0.4 2,899,756 + Echvi_2441 0.74 -1.3 2,899,766 - Echvi_2441 0.74 +1.0 2,899,769 - Echvi_2441 0.74 +0.7 2,899,790 + Echvi_2441 0.75 -0.7 2,899,790 + Echvi_2441 0.75 -1.9 2,899,790 + Echvi_2441 0.75 -0.6 2,899,790 + +3.6 2,899,790 + Echvi_2441 0.75 -0.3 2,899,806 + +0.0 2,899,812 - Echvi_2441 0.76 -1.3 2,899,898 + Echvi_2441 0.78 +1.6 2,899,898 + Echvi_2441 0.78 +1.1 2,899,898 + Echvi_2441 0.78 -2.1 2,899,936 + Echvi_2441 0.79 -1.1 2,899,937 - Echvi_2441 0.79 +0.6 2,899,937 - Echvi_2441 0.79 +0.8 2,899,998 + Echvi_2441 0.81 -2.3 2,899,999 - Echvi_2441 0.81 +1.2 2,900,027 - Echvi_2441 0.82 -0.1 2,900,037 + Echvi_2441 0.82 -1.4 2,900,049 + Echvi_2441 0.83 -0.5 2,900,049 + Echvi_2441 0.83 -0.4 2,900,050 - Echvi_2441 0.83 -1.0 2,900,060 - Echvi_2441 0.83 -1.1 2,900,083 - Echvi_2441 0.84 +2.6 2,900,130 + Echvi_2441 0.85 +0.9 2,900,178 + Echvi_2441 0.86 -1.8 2,900,178 + Echvi_2441 0.86 -0.8 2,900,178 + Echvi_2441 0.86 -0.7 2,900,218 + Echvi_2441 0.88 -0.4 2,900,219 - Echvi_2441 0.88 +1.2 2,900,295 - Echvi_2441 0.90 +1.3 2,900,295 - Echvi_2441 0.90 +0.3 2,900,309 + -2.5 2,900,310 - +0.5 2,900,314 + -0.8 2,900,338 - +0.5 2,900,342 - +1.1 2,900,351 + -1.0 2,900,361 + -0.5 2,900,361 + -2.0 2,900,412 + +0.3 2,900,523 + -1.8 2,900,523 + -0.9 2,900,550 + -0.3 2,900,551 - -2.2 2,900,551 - +0.4 2,900,586 + -1.7 2,900,633 - +0.4 2,900,658 + -1.7 2,900,659 - -0.5 2,900,667 + -1.6 2,900,731 - Echvi_2442 0.11 -0.9 2,900,767 + Echvi_2442 0.20 -1.6 2,900,767 + Echvi_2442 0.20 -1.5 2,900,767 + Echvi_2442 0.20 -0.9 2,900,768 - Echvi_2442 0.20 +0.5 2,900,768 - Echvi_2442 0.20 +0.6 2,900,771 + Echvi_2442 0.21 -1.4 2,900,771 + Echvi_2442 0.21 -1.1 2,900,771 + Echvi_2442 0.21 -2.7 2,900,771 + Echvi_2442 0.21 -2.6 2,900,771 + Echvi_2442 0.21 -1.9 2,900,771 + Echvi_2442 0.21 -0.2 2,900,771 + Echvi_2442 0.21 -0.9 2,900,771 + Echvi_2442 0.21 -0.8 2,900,771 + Echvi_2442 0.21 -0.8 2,900,771 + Echvi_2442 0.21 -1.3 2,900,771 + Echvi_2442 0.21 -2.2 2,900,771 + Echvi_2442 0.21 -1.0 2,900,771 + Echvi_2442 0.21 -0.2 2,900,772 - Echvi_2442 0.21 -0.2 2,900,772 - Echvi_2442 0.21 +0.3 2,900,772 - Echvi_2442 0.21 -0.1 2,900,775 + Echvi_2442 0.22 -2.5 2,900,775 + Echvi_2442 0.22 -0.7 2,900,775 + Echvi_2442 0.22 -2.1 2,900,775 + Echvi_2442 0.22 -0.3 2,900,775 + Echvi_2442 0.22 -0.5 2,900,775 + Echvi_2442 0.22 -1.4 2,900,775 + Echvi_2442 0.22 -1.2 2,900,775 + Echvi_2442 0.22 -1.2 2,900,775 + Echvi_2442 0.22 -2.5 2,900,775 + Echvi_2442 0.22 -1.2 2,900,775 + Echvi_2442 0.22 -2.3 2,900,776 - Echvi_2442 0.22 +0.0 2,900,776 - Echvi_2442 0.22 -0.4 2,900,776 - Echvi_2442 0.22 +0.9 2,900,807 + Echvi_2442 0.29 -2.2 2,900,807 + Echvi_2442 0.29 -1.9 2,900,807 + Echvi_2442 0.29 -1.8 2,900,819 - Echvi_2442 0.32 -0.6 2,900,848 + Echvi_2442 0.39 -0.9 2,900,848 + Echvi_2442 0.39 -1.1 2,900,897 + Echvi_2442 0.51 -1.8 2,900,898 - Echvi_2442 0.51 +0.3 2,900,902 + Echvi_2442 0.52 -1.6 2,900,903 - Echvi_2442 0.53 -0.9 2,900,943 + Echvi_2442 0.62 -1.9 2,900,943 + Echvi_2442 0.62 +0.3 2,900,943 + Echvi_2442 0.62 -1.6 2,900,944 - Echvi_2442 0.63 -0.0 2,900,944 - Echvi_2442 0.63 +0.2 2,900,945 + Echvi_2442 0.63 -0.8 2,900,945 + Echvi_2442 0.63 +0.5 2,900,946 - Echvi_2442 0.63 -1.0 2,901,029 + Echvi_2442 0.83 -0.4 2,901,029 + Echvi_2442 0.83 +0.0 2,901,029 + Echvi_2442 0.83 +0.5 2,901,033 + Echvi_2442 0.84 -2.1 2,901,033 + Echvi_2442 0.84 -2.3 2,901,033 + Echvi_2442 0.84 -2.9 2,901,033 + Echvi_2442 0.84 -1.6 2,901,033 + Echvi_2442 0.84 +1.0 2,901,033 + Echvi_2442 0.84 -2.0 2,901,034 - Echvi_2442 0.84 +0.5 2,901,034 - Echvi_2442 0.84 -0.4 2,901,072 + -1.4 2,901,073 - +0.4 2,901,075 - -1.0 2,901,161 + Echvi_2443 0.28 +1.6 2,901,162 - Echvi_2443 0.28 +1.3 2,901,162 - Echvi_2443 0.28 +0.7 2,901,162 - Echvi_2443 0.28 +0.8 2,901,173 + Echvi_2443 0.33 -0.1 2,901,174 - Echvi_2443 0.33 +0.5 2,901,200 + Echvi_2443 0.44 +0.5 2,901,201 - Echvi_2443 0.44 +0.6 2,901,329 - +0.4 2,901,353 + -0.9 2,901,353 + -0.0 2,901,360 - +0.2 2,901,368 + -1.6 2,901,368 + +0.4 2,901,374 + +0.5 2,901,409 + +0.7 2,901,418 + +0.6 2,901,418 + +0.5 2,901,438 + +0.3 2,901,439 - -0.2 2,901,439 - +1.0 2,901,439 - -0.9 2,901,439 - -0.1 2,901,440 + -0.1 2,901,440 + -0.4 2,901,440 + -0.1 2,901,441 - -0.2 2,901,441 - +2.0 2,901,442 + -0.8 2,901,442 + +0.3 2,901,442 + -0.4 2,901,442 + -1.2 2,901,442 + -1.0 2,901,442 + -0.6 2,901,442 + +0.9 2,901,442 + -0.5 2,901,442 + -0.1 2,901,443 - +0.4 2,901,445 + +0.1 2,901,446 - -1.4 2,901,469 + Echvi_2444 0.11 -0.1 2,901,469 + Echvi_2444 0.11 +0.1 2,901,542 + Echvi_2444 0.18 -0.2 2,901,566 + Echvi_2444 0.20 +1.0 2,901,567 - Echvi_2444 0.20 +0.8 2,901,618 + Echvi_2444 0.25 +0.7 2,901,618 + Echvi_2444 0.25 -0.6 2,901,620 + Echvi_2444 0.26 +0.7 2,901,621 - Echvi_2444 0.26 +0.4 2,901,649 + Echvi_2444 0.28 +0.1 2,901,649 + Echvi_2444 0.28 -0.8 2,901,650 - Echvi_2444 0.28 +0.7 2,901,650 - Echvi_2444 0.28 +0.3 2,901,650 - Echvi_2444 0.28 +0.0 2,901,667 + Echvi_2444 0.30 +2.0 2,901,667 + Echvi_2444 0.30 +1.1 2,901,667 + Echvi_2444 0.30 -0.5 2,901,704 + Echvi_2444 0.34 -0.8 2,901,705 - Echvi_2444 0.34 +0.7 2,901,743 + Echvi_2444 0.38 -1.6 2,901,743 + Echvi_2444 0.38 -0.6 2,901,779 - Echvi_2444 0.41 -0.0 2,901,795 + Echvi_2444 0.43 -0.0 2,901,795 + Echvi_2444 0.43 -0.9 2,901,796 - Echvi_2444 0.43 +0.4 2,901,799 + Echvi_2444 0.43 +0.4 2,901,853 + Echvi_2444 0.49 -0.1 2,901,853 + Echvi_2444 0.49 -0.1 2,901,925 + Echvi_2444 0.56 +0.2 2,901,925 + Echvi_2444 0.56 -1.7 2,901,925 + Echvi_2444 0.56 +0.6 2,901,926 - Echvi_2444 0.56 +0.7 2,901,929 + Echvi_2444 0.56 +0.0 2,901,996 + Echvi_2444 0.63 +0.1 2,902,026 + Echvi_2444 0.66 -1.0 2,902,079 - Echvi_2444 0.71 +0.4 2,902,080 + Echvi_2444 0.71 +0.0 2,902,080 + Echvi_2444 0.71 -0.5 2,902,080 + Echvi_2444 0.71 -1.1 2,902,080 + Echvi_2444 0.71 +0.1
Or see this region's nucleotide sequence