Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2411

Experiment: m.b. Cobalt chloride 0.8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2409 and Echvi_2410 overlap by 1 nucleotidesEchvi_2410 and Echvi_2411 are separated by 116 nucleotidesEchvi_2411 and Echvi_2412 are separated by 573 nucleotides Echvi_2409: Echvi_2409 - Acetyltransferases, at 2,852,430 to 2,852,891 _2409 Echvi_2410: Echvi_2410 - Acetyltransferases, at 2,852,891 to 2,853,343 _2410 Echvi_2411: Echvi_2411 - tRNA, at 2,853,460 to 2,853,545 _2411 Echvi_2412: Echvi_2412 - Beta-glucosidase-related glycosidases, at 2,854,119 to 2,856,518 _2412 Position (kb) 2853 2854Strain fitness (log2 ratio) -2 -1 0 1 2at 2852.534 kb on + strand, within Echvi_2409at 2852.536 kb on + strand, within Echvi_2409at 2852.617 kb on + strand, within Echvi_2409at 2852.618 kb on - strand, within Echvi_2409at 2852.704 kb on + strand, within Echvi_2409at 2852.704 kb on + strand, within Echvi_2409at 2852.704 kb on + strand, within Echvi_2409at 2852.705 kb on - strand, within Echvi_2409at 2852.705 kb on - strand, within Echvi_2409at 2852.705 kb on - strand, within Echvi_2409at 2852.772 kb on + strand, within Echvi_2409at 2852.772 kb on + strand, within Echvi_2409at 2852.773 kb on - strand, within Echvi_2409at 2852.775 kb on - strand, within Echvi_2409at 2852.804 kb on + strand, within Echvi_2409at 2852.804 kb on + strand, within Echvi_2409at 2852.804 kb on + strand, within Echvi_2409at 2852.804 kb on + strand, within Echvi_2409at 2852.804 kb on + strand, within Echvi_2409at 2852.804 kb on + strand, within Echvi_2409at 2852.805 kb on - strand, within Echvi_2409at 2852.805 kb on - strand, within Echvi_2409at 2852.805 kb on - strand, within Echvi_2409at 2852.805 kb on - strand, within Echvi_2409at 2852.805 kb on - strand, within Echvi_2409at 2852.808 kb on + strand, within Echvi_2409at 2852.809 kb on - strand, within Echvi_2409at 2852.853 kb on + strandat 2852.870 kb on + strandat 2852.881 kb on + strandat 2853.002 kb on + strand, within Echvi_2410at 2853.003 kb on - strand, within Echvi_2410at 2853.003 kb on - strand, within Echvi_2410at 2853.023 kb on - strand, within Echvi_2410at 2853.074 kb on - strand, within Echvi_2410at 2853.083 kb on + strand, within Echvi_2410at 2853.108 kb on - strand, within Echvi_2410at 2853.174 kb on + strand, within Echvi_2410at 2853.175 kb on - strand, within Echvi_2410at 2853.342 kb on - strandat 2853.373 kb on + strandat 2853.374 kb on - strandat 2853.663 kb on + strandat 2853.664 kb on - strandat 2853.672 kb on + strandat 2853.673 kb on - strandat 2853.720 kb on - strandat 2853.772 kb on + strandat 2853.840 kb on - strandat 2853.934 kb on + strandat 2854.093 kb on + strandat 2854.094 kb on - strandat 2854.118 kb on + strandat 2854.118 kb on + strandat 2854.118 kb on + strandat 2854.119 kb on - strandat 2854.156 kb on - strandat 2854.172 kb on + strandat 2854.173 kb on - strandat 2854.173 kb on - strandat 2854.173 kb on - strandat 2854.227 kb on + strandat 2854.313 kb on + strandat 2854.313 kb on + strandat 2854.400 kb on + strand, within Echvi_2412at 2854.400 kb on + strand, within Echvi_2412at 2854.401 kb on - strand, within Echvi_2412at 2854.401 kb on - strand, within Echvi_2412at 2854.401 kb on - strand, within Echvi_2412at 2854.510 kb on - strand, within Echvi_2412at 2854.510 kb on - strand, within Echvi_2412

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.8 mM
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2,852,534 + Echvi_2409 0.23 +0.4
2,852,536 + Echvi_2409 0.23 -0.6
2,852,617 + Echvi_2409 0.40 +0.3
2,852,618 - Echvi_2409 0.41 +0.6
2,852,704 + Echvi_2409 0.59 +0.9
2,852,704 + Echvi_2409 0.59 -2.3
2,852,704 + Echvi_2409 0.59 +1.1
2,852,705 - Echvi_2409 0.60 -0.2
2,852,705 - Echvi_2409 0.60 -1.1
2,852,705 - Echvi_2409 0.60 -1.6
2,852,772 + Echvi_2409 0.74 +0.1
2,852,772 + Echvi_2409 0.74 -0.7
2,852,773 - Echvi_2409 0.74 +1.1
2,852,775 - Echvi_2409 0.75 -1.3
2,852,804 + Echvi_2409 0.81 +0.2
2,852,804 + Echvi_2409 0.81 +0.2
2,852,804 + Echvi_2409 0.81 -2.0
2,852,804 + Echvi_2409 0.81 +2.0
2,852,804 + Echvi_2409 0.81 -0.8
2,852,804 + Echvi_2409 0.81 -0.2
2,852,805 - Echvi_2409 0.81 +0.0
2,852,805 - Echvi_2409 0.81 -1.0
2,852,805 - Echvi_2409 0.81 -0.3
2,852,805 - Echvi_2409 0.81 +0.7
2,852,805 - Echvi_2409 0.81 +0.0
2,852,808 + Echvi_2409 0.82 +1.2
2,852,809 - Echvi_2409 0.82 -0.9
2,852,853 + -0.0
2,852,870 + +0.0
2,852,881 + -0.8
2,853,002 + Echvi_2410 0.25 +0.7
2,853,003 - Echvi_2410 0.25 -2.1
2,853,003 - Echvi_2410 0.25 -0.6
2,853,023 - Echvi_2410 0.29 -1.3
2,853,074 - Echvi_2410 0.40 -0.3
2,853,083 + Echvi_2410 0.42 -0.8
2,853,108 - Echvi_2410 0.48 -0.5
2,853,174 + Echvi_2410 0.62 +2.6
2,853,175 - Echvi_2410 0.63 -0.3
2,853,342 - -1.1
2,853,373 + +1.2
2,853,374 - +1.1
2,853,663 + -0.2
2,853,664 - -1.2
2,853,672 + -2.7
2,853,673 - -1.8
2,853,720 - +0.5
2,853,772 + +0.3
2,853,840 - +1.0
2,853,934 + +0.0
2,854,093 + -1.0
2,854,094 - +1.6
2,854,118 + -0.5
2,854,118 + +0.0
2,854,118 + +0.3
2,854,119 - -1.2
2,854,156 - +0.3
2,854,172 + +1.8
2,854,173 - +0.4
2,854,173 - -0.5
2,854,173 - -1.2
2,854,227 + +0.0
2,854,313 + +1.6
2,854,313 + +0.4
2,854,400 + Echvi_2412 0.12 +2.6
2,854,400 + Echvi_2412 0.12 -0.1
2,854,401 - Echvi_2412 0.12 +0.4
2,854,401 - Echvi_2412 0.12 +0.6
2,854,401 - Echvi_2412 0.12 +0.6
2,854,510 - Echvi_2412 0.16 -1.7
2,854,510 - Echvi_2412 0.16 +0.1

Or see this region's nucleotide sequence