Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2314

Experiment: m.b. Cobalt chloride 0.8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2312 and Echvi_2313 are separated by 90 nucleotidesEchvi_2313 and Echvi_2314 are separated by 7 nucleotidesEchvi_2314 and Echvi_2315 are separated by 22 nucleotidesEchvi_2315 and Echvi_2316 are separated by 151 nucleotidesEchvi_2316 and Echvi_2317 are separated by 19 nucleotides Echvi_2312: Echvi_2312 - NAD+ synthetase, at 2,746,335 to 2,748,188 _2312 Echvi_2313: Echvi_2313 - ribonuclease III, bacterial, at 2,748,279 to 2,749,022 _2313 Echvi_2314: Echvi_2314 - beta-ketoacyl-acyl-carrier-protein synthase II, at 2,749,030 to 2,750,283 _2314 Echvi_2315: Echvi_2315 - acyl carrier protein, at 2,750,306 to 2,750,542 _2315 Echvi_2316: Echvi_2316 - hypothetical protein, at 2,750,694 to 2,751,122 _2316 Echvi_2317: Echvi_2317 - pyruvate kinase, at 2,751,142 to 2,752,578 _2317 Position (kb) 2749 2750 2751Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2748.191 kb on - strandat 2748.191 kb on - strandat 2748.191 kb on - strandat 2748.191 kb on - strandat 2748.255 kb on - strandat 2748.255 kb on - strandat 2748.255 kb on - strandat 2748.260 kb on - strandat 2748.260 kb on - strandat 2748.260 kb on - strandat 2748.260 kb on - strandat 2748.271 kb on - strandat 2748.271 kb on - strandat 2748.273 kb on - strandat 2748.280 kb on + strandat 2748.280 kb on + strandat 2748.281 kb on - strandat 2748.281 kb on - strandat 2748.281 kb on - strandat 2748.281 kb on - strandat 2748.344 kb on + strandat 2748.345 kb on - strandat 2748.396 kb on - strand, within Echvi_2313at 2748.444 kb on + strand, within Echvi_2313at 2748.444 kb on + strand, within Echvi_2313at 2748.445 kb on - strand, within Echvi_2313at 2748.482 kb on + strand, within Echvi_2313at 2748.483 kb on - strand, within Echvi_2313at 2748.512 kb on + strand, within Echvi_2313at 2748.512 kb on + strand, within Echvi_2313at 2748.513 kb on - strand, within Echvi_2313at 2748.513 kb on - strand, within Echvi_2313at 2748.516 kb on - strand, within Echvi_2313at 2748.529 kb on + strand, within Echvi_2313at 2748.573 kb on - strand, within Echvi_2313at 2748.574 kb on + strand, within Echvi_2313at 2748.589 kb on + strand, within Echvi_2313at 2748.590 kb on - strand, within Echvi_2313at 2748.590 kb on - strand, within Echvi_2313at 2748.590 kb on - strand, within Echvi_2313at 2748.590 kb on - strand, within Echvi_2313at 2748.612 kb on + strand, within Echvi_2313at 2748.613 kb on - strand, within Echvi_2313at 2748.625 kb on + strand, within Echvi_2313at 2748.626 kb on - strand, within Echvi_2313at 2748.644 kb on - strand, within Echvi_2313at 2748.644 kb on - strand, within Echvi_2313at 2748.645 kb on + strand, within Echvi_2313at 2748.645 kb on + strand, within Echvi_2313at 2748.646 kb on - strand, within Echvi_2313at 2748.646 kb on - strand, within Echvi_2313at 2748.845 kb on + strand, within Echvi_2313at 2748.905 kb on + strand, within Echvi_2313at 2748.908 kb on - strand, within Echvi_2313at 2748.908 kb on - strand, within Echvi_2313at 2748.908 kb on - strand, within Echvi_2313at 2748.909 kb on + strand, within Echvi_2313at 2748.909 kb on + strand, within Echvi_2313at 2748.910 kb on - strand, within Echvi_2313at 2748.942 kb on + strand, within Echvi_2313at 2748.942 kb on + strand, within Echvi_2313at 2748.982 kb on + strandat 2748.983 kb on - strandat 2748.983 kb on - strandat 2748.987 kb on + strandat 2748.987 kb on + strandat 2748.987 kb on + strandat 2748.988 kb on - strandat 2749.099 kb on + strandat 2749.200 kb on + strand, within Echvi_2314at 2749.200 kb on + strand, within Echvi_2314at 2749.201 kb on - strand, within Echvi_2314at 2749.299 kb on - strand, within Echvi_2314at 2749.317 kb on + strand, within Echvi_2314at 2749.342 kb on + strand, within Echvi_2314at 2749.343 kb on - strand, within Echvi_2314at 2749.372 kb on + strand, within Echvi_2314at 2749.373 kb on - strand, within Echvi_2314at 2749.382 kb on + strand, within Echvi_2314at 2749.383 kb on - strand, within Echvi_2314at 2749.564 kb on - strand, within Echvi_2314at 2749.751 kb on + strand, within Echvi_2314at 2749.752 kb on - strand, within Echvi_2314at 2749.752 kb on - strand, within Echvi_2314at 2749.752 kb on - strand, within Echvi_2314at 2749.752 kb on - strand, within Echvi_2314at 2749.756 kb on - strand, within Echvi_2314at 2749.756 kb on - strand, within Echvi_2314at 2749.996 kb on + strand, within Echvi_2314at 2749.997 kb on - strand, within Echvi_2314at 2749.997 kb on - strand, within Echvi_2314at 2750.098 kb on - strand, within Echvi_2314at 2750.167 kb on - strandat 2750.587 kb on - strandat 2751.118 kb on - strandat 2751.129 kb on + strandat 2751.132 kb on + strandat 2751.134 kb on + strandat 2751.134 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.8 mM
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2,748,191 - +0.6
2,748,191 - +0.1
2,748,191 - +2.6
2,748,191 - -0.9
2,748,255 - +0.5
2,748,255 - -0.7
2,748,255 - -0.9
2,748,260 - +0.2
2,748,260 - -0.1
2,748,260 - +0.0
2,748,260 - -1.1
2,748,271 - -0.1
2,748,271 - +1.1
2,748,273 - -0.3
2,748,280 + +0.2
2,748,280 + -2.2
2,748,281 - -1.3
2,748,281 - +1.5
2,748,281 - -0.7
2,748,281 - -1.2
2,748,344 + +0.1
2,748,345 - -0.5
2,748,396 - Echvi_2313 0.16 -0.3
2,748,444 + Echvi_2313 0.22 -0.8
2,748,444 + Echvi_2313 0.22 -0.1
2,748,445 - Echvi_2313 0.22 +0.5
2,748,482 + Echvi_2313 0.27 -0.5
2,748,483 - Echvi_2313 0.27 +0.1
2,748,512 + Echvi_2313 0.31 -0.4
2,748,512 + Echvi_2313 0.31 +0.1
2,748,513 - Echvi_2313 0.31 -0.2
2,748,513 - Echvi_2313 0.31 -0.9
2,748,516 - Echvi_2313 0.32 -0.9
2,748,529 + Echvi_2313 0.34 -1.0
2,748,573 - Echvi_2313 0.40 -0.6
2,748,574 + Echvi_2313 0.40 -1.1
2,748,589 + Echvi_2313 0.42 -0.5
2,748,590 - Echvi_2313 0.42 -1.5
2,748,590 - Echvi_2313 0.42 -0.7
2,748,590 - Echvi_2313 0.42 -1.8
2,748,590 - Echvi_2313 0.42 +0.3
2,748,612 + Echvi_2313 0.45 +1.0
2,748,613 - Echvi_2313 0.45 -0.5
2,748,625 + Echvi_2313 0.47 -0.6
2,748,626 - Echvi_2313 0.47 -0.0
2,748,644 - Echvi_2313 0.49 -0.2
2,748,644 - Echvi_2313 0.49 +0.3
2,748,645 + Echvi_2313 0.49 -0.5
2,748,645 + Echvi_2313 0.49 -1.1
2,748,646 - Echvi_2313 0.49 -0.7
2,748,646 - Echvi_2313 0.49 -0.4
2,748,845 + Echvi_2313 0.76 -0.6
2,748,905 + Echvi_2313 0.84 -0.7
2,748,908 - Echvi_2313 0.85 -1.3
2,748,908 - Echvi_2313 0.85 -0.7
2,748,908 - Echvi_2313 0.85 +0.5
2,748,909 + Echvi_2313 0.85 -1.1
2,748,909 + Echvi_2313 0.85 -1.2
2,748,910 - Echvi_2313 0.85 -1.5
2,748,942 + Echvi_2313 0.89 -2.0
2,748,942 + Echvi_2313 0.89 -1.4
2,748,982 + -1.6
2,748,983 - -3.3
2,748,983 - +1.5
2,748,987 + -0.6
2,748,987 + -2.9
2,748,987 + -1.8
2,748,988 - -0.9
2,749,099 + -1.1
2,749,200 + Echvi_2314 0.14 -1.4
2,749,200 + Echvi_2314 0.14 -0.3
2,749,201 - Echvi_2314 0.14 +0.2
2,749,299 - Echvi_2314 0.21 +1.2
2,749,317 + Echvi_2314 0.23 -0.9
2,749,342 + Echvi_2314 0.25 -1.1
2,749,343 - Echvi_2314 0.25 -1.7
2,749,372 + Echvi_2314 0.27 -0.5
2,749,373 - Echvi_2314 0.27 -1.7
2,749,382 + Echvi_2314 0.28 -1.3
2,749,383 - Echvi_2314 0.28 -0.6
2,749,564 - Echvi_2314 0.43 +1.1
2,749,751 + Echvi_2314 0.57 -0.1
2,749,752 - Echvi_2314 0.58 -1.2
2,749,752 - Echvi_2314 0.58 +0.3
2,749,752 - Echvi_2314 0.58 +0.6
2,749,752 - Echvi_2314 0.58 +0.2
2,749,756 - Echvi_2314 0.58 -0.4
2,749,756 - Echvi_2314 0.58 +0.1
2,749,996 + Echvi_2314 0.77 +1.3
2,749,997 - Echvi_2314 0.77 -1.0
2,749,997 - Echvi_2314 0.77 -1.1
2,750,098 - Echvi_2314 0.85 +1.3
2,750,167 - +1.5
2,750,587 - -0.4
2,751,118 - -1.6
2,751,129 + -0.1
2,751,132 + -1.0
2,751,134 + -1.7
2,751,134 + -1.1

Or see this region's nucleotide sequence