Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2284

Experiment: m.b. Cobalt chloride 0.8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2283 and Echvi_2284 overlap by 11 nucleotidesEchvi_2284 and Echvi_2285 are separated by 197 nucleotides Echvi_2283: Echvi_2283 - Cystathionine beta-lyases/cystathionine gamma-synthases, at 2,705,439 to 2,706,614 _2283 Echvi_2284: Echvi_2284 - hypothetical protein, at 2,706,604 to 2,706,738 _2284 Echvi_2285: Echvi_2285 - hypothetical protein, at 2,706,936 to 2,707,610 _2285 Position (kb) 2706 2707Strain fitness (log2 ratio) -2 -1 0 1 2at 2705.652 kb on - strand, within Echvi_2283at 2705.764 kb on + strand, within Echvi_2283at 2705.769 kb on + strand, within Echvi_2283at 2705.778 kb on + strand, within Echvi_2283at 2705.779 kb on - strand, within Echvi_2283at 2705.800 kb on + strand, within Echvi_2283at 2705.994 kb on - strand, within Echvi_2283at 2705.995 kb on + strand, within Echvi_2283at 2705.996 kb on - strand, within Echvi_2283at 2706.052 kb on + strand, within Echvi_2283at 2706.052 kb on + strand, within Echvi_2283at 2706.052 kb on + strand, within Echvi_2283at 2706.053 kb on - strand, within Echvi_2283at 2706.230 kb on - strand, within Echvi_2283at 2706.230 kb on - strand, within Echvi_2283at 2706.233 kb on + strand, within Echvi_2283at 2706.234 kb on - strand, within Echvi_2283at 2706.239 kb on + strand, within Echvi_2283at 2706.239 kb on + strand, within Echvi_2283at 2706.240 kb on - strand, within Echvi_2283at 2706.311 kb on + strand, within Echvi_2283at 2706.532 kb on + strandat 2706.532 kb on + strandat 2706.533 kb on - strandat 2706.533 kb on - strandat 2706.617 kb on + strandat 2706.617 kb on + strandat 2706.618 kb on - strand, within Echvi_2284at 2706.621 kb on + strand, within Echvi_2284at 2706.621 kb on + strand, within Echvi_2284at 2706.622 kb on - strand, within Echvi_2284at 2706.622 kb on - strand, within Echvi_2284at 2706.622 kb on - strand, within Echvi_2284at 2706.680 kb on + strand, within Echvi_2284at 2706.746 kb on - strandat 2706.752 kb on + strandat 2706.877 kb on + strandat 2706.906 kb on - strandat 2707.014 kb on + strand, within Echvi_2285at 2707.070 kb on - strand, within Echvi_2285at 2707.096 kb on + strand, within Echvi_2285at 2707.096 kb on + strand, within Echvi_2285at 2707.096 kb on + strand, within Echvi_2285at 2707.096 kb on + strandat 2707.096 kb on + strand, within Echvi_2285at 2707.096 kb on + strand, within Echvi_2285at 2707.097 kb on - strand, within Echvi_2285at 2707.097 kb on - strand, within Echvi_2285at 2707.097 kb on - strand, within Echvi_2285at 2707.097 kb on - strand, within Echvi_2285at 2707.097 kb on - strand, within Echvi_2285at 2707.104 kb on + strand, within Echvi_2285at 2707.212 kb on - strand, within Echvi_2285at 2707.245 kb on + strand, within Echvi_2285at 2707.333 kb on + strand, within Echvi_2285at 2707.333 kb on + strand, within Echvi_2285at 2707.334 kb on - strand, within Echvi_2285at 2707.334 kb on - strand, within Echvi_2285at 2707.399 kb on + strand, within Echvi_2285at 2707.399 kb on + strand, within Echvi_2285at 2707.425 kb on + strand, within Echvi_2285at 2707.558 kb on - strandat 2707.560 kb on + strandat 2707.561 kb on - strandat 2707.569 kb on + strandat 2707.613 kb on + strandat 2707.645 kb on + strandat 2707.646 kb on - strandat 2707.646 kb on - strandat 2707.646 kb on - strandat 2707.679 kb on + strandat 2707.683 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.8 mM
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2,705,652 - Echvi_2283 0.18 +0.8
2,705,764 + Echvi_2283 0.28 -1.8
2,705,769 + Echvi_2283 0.28 +0.2
2,705,778 + Echvi_2283 0.29 -0.5
2,705,779 - Echvi_2283 0.29 -0.0
2,705,800 + Echvi_2283 0.31 -0.1
2,705,994 - Echvi_2283 0.47 +2.2
2,705,995 + Echvi_2283 0.47 +0.5
2,705,996 - Echvi_2283 0.47 -0.3
2,706,052 + Echvi_2283 0.52 +0.1
2,706,052 + Echvi_2283 0.52 -0.3
2,706,052 + Echvi_2283 0.52 +0.2
2,706,053 - Echvi_2283 0.52 +1.2
2,706,230 - Echvi_2283 0.67 +2.0
2,706,230 - Echvi_2283 0.67 -0.9
2,706,233 + Echvi_2283 0.68 -0.1
2,706,234 - Echvi_2283 0.68 +0.1
2,706,239 + Echvi_2283 0.68 +0.5
2,706,239 + Echvi_2283 0.68 +0.8
2,706,240 - Echvi_2283 0.68 -0.5
2,706,311 + Echvi_2283 0.74 +1.3
2,706,532 + +0.0
2,706,532 + -0.5
2,706,533 - -0.3
2,706,533 - -0.7
2,706,617 + +0.4
2,706,617 + -0.7
2,706,618 - Echvi_2284 0.10 -1.9
2,706,621 + Echvi_2284 0.13 -0.2
2,706,621 + Echvi_2284 0.13 -0.4
2,706,622 - Echvi_2284 0.13 -0.0
2,706,622 - Echvi_2284 0.13 -0.2
2,706,622 - Echvi_2284 0.13 -0.3
2,706,680 + Echvi_2284 0.56 -1.4
2,706,746 - -1.5
2,706,752 + -0.2
2,706,877 + -0.6
2,706,906 - +1.5
2,707,014 + Echvi_2285 0.12 -0.1
2,707,070 - Echvi_2285 0.20 +0.4
2,707,096 + Echvi_2285 0.24 +0.1
2,707,096 + Echvi_2285 0.24 -0.1
2,707,096 + Echvi_2285 0.24 -2.6
2,707,096 + +0.1
2,707,096 + Echvi_2285 0.24 -0.2
2,707,096 + Echvi_2285 0.24 -0.3
2,707,097 - Echvi_2285 0.24 +0.8
2,707,097 - Echvi_2285 0.24 -1.4
2,707,097 - Echvi_2285 0.24 -1.9
2,707,097 - Echvi_2285 0.24 +0.2
2,707,097 - Echvi_2285 0.24 +0.4
2,707,104 + Echvi_2285 0.25 -1.0
2,707,212 - Echvi_2285 0.41 +0.6
2,707,245 + Echvi_2285 0.46 -1.2
2,707,333 + Echvi_2285 0.59 -0.2
2,707,333 + Echvi_2285 0.59 -0.8
2,707,334 - Echvi_2285 0.59 -1.0
2,707,334 - Echvi_2285 0.59 -1.5
2,707,399 + Echvi_2285 0.69 -0.0
2,707,399 + Echvi_2285 0.69 -1.3
2,707,425 + Echvi_2285 0.72 -0.4
2,707,558 - -0.1
2,707,560 + +0.8
2,707,561 - -0.3
2,707,569 + -0.5
2,707,613 + +0.6
2,707,645 + +0.7
2,707,646 - +1.5
2,707,646 - -1.0
2,707,646 - +0.7
2,707,679 + -2.0
2,707,683 + +0.2

Or see this region's nucleotide sequence