Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2196

Experiment: m.b. Cobalt chloride 0.8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2195 and Echvi_2196 are separated by 117 nucleotidesEchvi_2196 and Echvi_2197 overlap by 4 nucleotides Echvi_2195: Echvi_2195 - putative efflux protein, MATE family, at 2,622,862 to 2,624,235 _2195 Echvi_2196: Echvi_2196 - Acyl-CoA hydrolase, at 2,624,353 to 2,624,922 _2196 Echvi_2197: Echvi_2197 - Arabinose efflux permease, at 2,624,919 to 2,626,124 _2197 Position (kb) 2624 2625Strain fitness (log2 ratio) -2 -1 0 1 2at 2623.386 kb on - strand, within Echvi_2195at 2623.386 kb on - strand, within Echvi_2195at 2623.408 kb on + strand, within Echvi_2195at 2623.409 kb on - strand, within Echvi_2195at 2623.498 kb on + strand, within Echvi_2195at 2623.503 kb on + strand, within Echvi_2195at 2623.719 kb on + strand, within Echvi_2195at 2623.719 kb on + strand, within Echvi_2195at 2623.719 kb on + strand, within Echvi_2195at 2623.719 kb on + strand, within Echvi_2195at 2623.720 kb on - strand, within Echvi_2195at 2623.723 kb on + strand, within Echvi_2195at 2623.723 kb on + strand, within Echvi_2195at 2623.725 kb on + strand, within Echvi_2195at 2623.726 kb on - strand, within Echvi_2195at 2623.845 kb on + strand, within Echvi_2195at 2623.900 kb on + strand, within Echvi_2195at 2623.903 kb on - strand, within Echvi_2195at 2623.940 kb on + strand, within Echvi_2195at 2624.040 kb on + strand, within Echvi_2195at 2624.076 kb on - strand, within Echvi_2195at 2624.081 kb on - strand, within Echvi_2195at 2624.081 kb on - strand, within Echvi_2195at 2624.081 kb on - strand, within Echvi_2195at 2624.081 kb on - strand, within Echvi_2195at 2624.082 kb on + strand, within Echvi_2195at 2624.082 kb on + strand, within Echvi_2195at 2624.082 kb on + strand, within Echvi_2195at 2624.082 kb on + strand, within Echvi_2195at 2624.083 kb on - strand, within Echvi_2195at 2624.083 kb on - strand, within Echvi_2195at 2624.083 kb on - strand, within Echvi_2195at 2624.272 kb on - strandat 2624.318 kb on + strandat 2624.338 kb on - strandat 2624.338 kb on - strandat 2624.339 kb on + strandat 2624.359 kb on - strandat 2624.492 kb on - strand, within Echvi_2196at 2624.492 kb on - strand, within Echvi_2196at 2624.633 kb on + strand, within Echvi_2196at 2624.633 kb on + strand, within Echvi_2196at 2624.639 kb on + strand, within Echvi_2196at 2624.639 kb on + strand, within Echvi_2196at 2624.683 kb on - strand, within Echvi_2196at 2624.683 kb on - strand, within Echvi_2196at 2624.683 kb on - strand, within Echvi_2196at 2624.683 kb on - strand, within Echvi_2196at 2624.683 kb on - strand, within Echvi_2196at 2624.695 kb on + strand, within Echvi_2196at 2624.700 kb on + strand, within Echvi_2196at 2624.727 kb on + strand, within Echvi_2196at 2624.728 kb on - strand, within Echvi_2196at 2624.728 kb on - strand, within Echvi_2196at 2624.844 kb on - strand, within Echvi_2196at 2624.920 kb on + strandat 2624.921 kb on - strandat 2624.987 kb on + strandat 2624.987 kb on + strandat 2624.988 kb on - strandat 2624.988 kb on - strandat 2625.109 kb on + strand, within Echvi_2197at 2625.109 kb on + strand, within Echvi_2197at 2625.110 kb on - strand, within Echvi_2197at 2625.110 kb on - strand, within Echvi_2197at 2625.151 kb on - strand, within Echvi_2197at 2625.359 kb on + strand, within Echvi_2197at 2625.360 kb on - strand, within Echvi_2197at 2625.360 kb on - strand, within Echvi_2197at 2625.360 kb on - strand, within Echvi_2197at 2625.381 kb on + strand, within Echvi_2197at 2625.381 kb on + strand, within Echvi_2197at 2625.437 kb on + strand, within Echvi_2197at 2625.450 kb on + strand, within Echvi_2197at 2625.451 kb on - strand, within Echvi_2197at 2625.451 kb on - strand, within Echvi_2197at 2625.451 kb on - strand, within Echvi_2197at 2625.454 kb on + strand, within Echvi_2197at 2625.502 kb on - strand, within Echvi_2197at 2625.502 kb on - strand, within Echvi_2197at 2625.502 kb on - strand, within Echvi_2197at 2625.588 kb on - strand, within Echvi_2197at 2625.617 kb on - strand, within Echvi_2197at 2625.641 kb on + strand, within Echvi_2197at 2625.641 kb on + strand, within Echvi_2197at 2625.652 kb on + strand, within Echvi_2197at 2625.652 kb on + strand, within Echvi_2197at 2625.653 kb on - strand, within Echvi_2197at 2625.653 kb on - strand, within Echvi_2197at 2625.661 kb on - strand, within Echvi_2197at 2625.808 kb on - strand, within Echvi_2197at 2625.855 kb on + strand, within Echvi_2197at 2625.855 kb on + strand, within Echvi_2197at 2625.856 kb on - strand, within Echvi_2197at 2625.856 kb on - strand, within Echvi_2197at 2625.915 kb on + strand, within Echvi_2197

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.8 mM
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2,623,386 - Echvi_2195 0.38 -1.7
2,623,386 - Echvi_2195 0.38 -0.7
2,623,408 + Echvi_2195 0.40 -0.3
2,623,409 - Echvi_2195 0.40 +0.6
2,623,498 + Echvi_2195 0.46 +0.7
2,623,503 + Echvi_2195 0.47 -0.4
2,623,719 + Echvi_2195 0.62 +0.4
2,623,719 + Echvi_2195 0.62 -0.4
2,623,719 + Echvi_2195 0.62 -0.6
2,623,719 + Echvi_2195 0.62 -1.6
2,623,720 - Echvi_2195 0.62 -0.8
2,623,723 + Echvi_2195 0.63 -0.5
2,623,723 + Echvi_2195 0.63 -1.2
2,623,725 + Echvi_2195 0.63 -0.4
2,623,726 - Echvi_2195 0.63 -0.0
2,623,845 + Echvi_2195 0.72 -1.2
2,623,900 + Echvi_2195 0.76 -2.3
2,623,903 - Echvi_2195 0.76 -1.2
2,623,940 + Echvi_2195 0.78 -0.3
2,624,040 + Echvi_2195 0.86 -0.1
2,624,076 - Echvi_2195 0.88 -0.4
2,624,081 - Echvi_2195 0.89 +0.0
2,624,081 - Echvi_2195 0.89 -0.9
2,624,081 - Echvi_2195 0.89 +1.5
2,624,081 - Echvi_2195 0.89 -0.1
2,624,082 + Echvi_2195 0.89 -0.4
2,624,082 + Echvi_2195 0.89 -0.8
2,624,082 + Echvi_2195 0.89 -2.5
2,624,082 + Echvi_2195 0.89 -0.6
2,624,083 - Echvi_2195 0.89 -0.2
2,624,083 - Echvi_2195 0.89 -1.5
2,624,083 - Echvi_2195 0.89 -1.0
2,624,272 - +1.5
2,624,318 + -0.5
2,624,338 - -1.0
2,624,338 - -0.0
2,624,339 + +0.6
2,624,359 - -1.7
2,624,492 - Echvi_2196 0.24 -1.2
2,624,492 - Echvi_2196 0.24 -1.4
2,624,633 + Echvi_2196 0.49 -0.4
2,624,633 + Echvi_2196 0.49 +0.1
2,624,639 + Echvi_2196 0.50 -1.6
2,624,639 + Echvi_2196 0.50 -0.4
2,624,683 - Echvi_2196 0.58 +1.2
2,624,683 - Echvi_2196 0.58 -0.2
2,624,683 - Echvi_2196 0.58 -0.7
2,624,683 - Echvi_2196 0.58 -1.5
2,624,683 - Echvi_2196 0.58 -0.3
2,624,695 + Echvi_2196 0.60 -1.5
2,624,700 + Echvi_2196 0.61 +0.4
2,624,727 + Echvi_2196 0.66 -0.6
2,624,728 - Echvi_2196 0.66 -0.9
2,624,728 - Echvi_2196 0.66 +0.7
2,624,844 - Echvi_2196 0.86 -1.3
2,624,920 + +0.4
2,624,921 - +0.5
2,624,987 + -0.5
2,624,987 + -0.5
2,624,988 - +0.0
2,624,988 - +1.7
2,625,109 + Echvi_2197 0.16 +0.1
2,625,109 + Echvi_2197 0.16 +0.2
2,625,110 - Echvi_2197 0.16 -0.5
2,625,110 - Echvi_2197 0.16 +0.1
2,625,151 - Echvi_2197 0.19 +1.1
2,625,359 + Echvi_2197 0.36 +0.7
2,625,360 - Echvi_2197 0.37 +0.1
2,625,360 - Echvi_2197 0.37 +1.0
2,625,360 - Echvi_2197 0.37 -0.5
2,625,381 + Echvi_2197 0.38 +0.6
2,625,381 + Echvi_2197 0.38 +1.8
2,625,437 + Echvi_2197 0.43 -0.5
2,625,450 + Echvi_2197 0.44 +0.6
2,625,451 - Echvi_2197 0.44 +0.4
2,625,451 - Echvi_2197 0.44 +0.1
2,625,451 - Echvi_2197 0.44 +0.2
2,625,454 + Echvi_2197 0.44 -0.6
2,625,502 - Echvi_2197 0.48 +0.7
2,625,502 - Echvi_2197 0.48 +1.7
2,625,502 - Echvi_2197 0.48 -1.2
2,625,588 - Echvi_2197 0.55 +1.0
2,625,617 - Echvi_2197 0.58 +1.8
2,625,641 + Echvi_2197 0.60 +0.8
2,625,641 + Echvi_2197 0.60 -0.9
2,625,652 + Echvi_2197 0.61 +0.6
2,625,652 + Echvi_2197 0.61 +2.0
2,625,653 - Echvi_2197 0.61 +0.9
2,625,653 - Echvi_2197 0.61 -0.2
2,625,661 - Echvi_2197 0.62 +0.7
2,625,808 - Echvi_2197 0.74 -0.7
2,625,855 + Echvi_2197 0.78 -0.6
2,625,855 + Echvi_2197 0.78 -1.4
2,625,856 - Echvi_2197 0.78 +0.5
2,625,856 - Echvi_2197 0.78 +1.0
2,625,915 + Echvi_2197 0.83 -0.4

Or see this region's nucleotide sequence