Experiment: m.b. Cobalt chloride 0.8 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2195 and Echvi_2196 are separated by 117 nucleotides Echvi_2196 and Echvi_2197 overlap by 4 nucleotides
Echvi_2195: Echvi_2195 - putative efflux protein, MATE family, at 2,622,862 to 2,624,235
_2195
Echvi_2196: Echvi_2196 - Acyl-CoA hydrolase, at 2,624,353 to 2,624,922
_2196
Echvi_2197: Echvi_2197 - Arabinose efflux permease, at 2,624,919 to 2,626,124
_2197
Position (kb)
2624
2625 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2623.386 kb on - strand, within Echvi_2195 at 2623.386 kb on - strand, within Echvi_2195 at 2623.408 kb on + strand, within Echvi_2195 at 2623.409 kb on - strand, within Echvi_2195 at 2623.498 kb on + strand, within Echvi_2195 at 2623.503 kb on + strand, within Echvi_2195 at 2623.719 kb on + strand, within Echvi_2195 at 2623.719 kb on + strand, within Echvi_2195 at 2623.719 kb on + strand, within Echvi_2195 at 2623.719 kb on + strand, within Echvi_2195 at 2623.720 kb on - strand, within Echvi_2195 at 2623.723 kb on + strand, within Echvi_2195 at 2623.723 kb on + strand, within Echvi_2195 at 2623.725 kb on + strand, within Echvi_2195 at 2623.726 kb on - strand, within Echvi_2195 at 2623.845 kb on + strand, within Echvi_2195 at 2623.900 kb on + strand, within Echvi_2195 at 2623.903 kb on - strand, within Echvi_2195 at 2623.940 kb on + strand, within Echvi_2195 at 2624.040 kb on + strand, within Echvi_2195 at 2624.076 kb on - strand, within Echvi_2195 at 2624.081 kb on - strand, within Echvi_2195 at 2624.081 kb on - strand, within Echvi_2195 at 2624.081 kb on - strand, within Echvi_2195 at 2624.081 kb on - strand, within Echvi_2195 at 2624.082 kb on + strand, within Echvi_2195 at 2624.082 kb on + strand, within Echvi_2195 at 2624.082 kb on + strand, within Echvi_2195 at 2624.082 kb on + strand, within Echvi_2195 at 2624.083 kb on - strand, within Echvi_2195 at 2624.083 kb on - strand, within Echvi_2195 at 2624.083 kb on - strand, within Echvi_2195 at 2624.272 kb on - strand at 2624.318 kb on + strand at 2624.338 kb on - strand at 2624.338 kb on - strand at 2624.339 kb on + strand at 2624.359 kb on - strand at 2624.492 kb on - strand, within Echvi_2196 at 2624.492 kb on - strand, within Echvi_2196 at 2624.633 kb on + strand, within Echvi_2196 at 2624.633 kb on + strand, within Echvi_2196 at 2624.639 kb on + strand, within Echvi_2196 at 2624.639 kb on + strand, within Echvi_2196 at 2624.683 kb on - strand, within Echvi_2196 at 2624.683 kb on - strand, within Echvi_2196 at 2624.683 kb on - strand, within Echvi_2196 at 2624.683 kb on - strand, within Echvi_2196 at 2624.683 kb on - strand, within Echvi_2196 at 2624.695 kb on + strand, within Echvi_2196 at 2624.700 kb on + strand, within Echvi_2196 at 2624.727 kb on + strand, within Echvi_2196 at 2624.728 kb on - strand, within Echvi_2196 at 2624.728 kb on - strand, within Echvi_2196 at 2624.844 kb on - strand, within Echvi_2196 at 2624.920 kb on + strand at 2624.921 kb on - strand at 2624.987 kb on + strand at 2624.987 kb on + strand at 2624.988 kb on - strand at 2624.988 kb on - strand at 2625.109 kb on + strand, within Echvi_2197 at 2625.109 kb on + strand, within Echvi_2197 at 2625.110 kb on - strand, within Echvi_2197 at 2625.110 kb on - strand, within Echvi_2197 at 2625.151 kb on - strand, within Echvi_2197 at 2625.359 kb on + strand, within Echvi_2197 at 2625.360 kb on - strand, within Echvi_2197 at 2625.360 kb on - strand, within Echvi_2197 at 2625.360 kb on - strand, within Echvi_2197 at 2625.381 kb on + strand, within Echvi_2197 at 2625.381 kb on + strand, within Echvi_2197 at 2625.437 kb on + strand, within Echvi_2197 at 2625.450 kb on + strand, within Echvi_2197 at 2625.451 kb on - strand, within Echvi_2197 at 2625.451 kb on - strand, within Echvi_2197 at 2625.451 kb on - strand, within Echvi_2197 at 2625.454 kb on + strand, within Echvi_2197 at 2625.502 kb on - strand, within Echvi_2197 at 2625.502 kb on - strand, within Echvi_2197 at 2625.502 kb on - strand, within Echvi_2197 at 2625.588 kb on - strand, within Echvi_2197 at 2625.617 kb on - strand, within Echvi_2197 at 2625.641 kb on + strand, within Echvi_2197 at 2625.641 kb on + strand, within Echvi_2197 at 2625.652 kb on + strand, within Echvi_2197 at 2625.652 kb on + strand, within Echvi_2197 at 2625.653 kb on - strand, within Echvi_2197 at 2625.653 kb on - strand, within Echvi_2197 at 2625.661 kb on - strand, within Echvi_2197 at 2625.808 kb on - strand, within Echvi_2197 at 2625.855 kb on + strand, within Echvi_2197 at 2625.855 kb on + strand, within Echvi_2197 at 2625.856 kb on - strand, within Echvi_2197 at 2625.856 kb on - strand, within Echvi_2197 at 2625.915 kb on + strand, within Echvi_2197
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.8 mM remove 2,623,386 - Echvi_2195 0.38 -1.7 2,623,386 - Echvi_2195 0.38 -0.7 2,623,408 + Echvi_2195 0.40 -0.3 2,623,409 - Echvi_2195 0.40 +0.6 2,623,498 + Echvi_2195 0.46 +0.7 2,623,503 + Echvi_2195 0.47 -0.4 2,623,719 + Echvi_2195 0.62 +0.4 2,623,719 + Echvi_2195 0.62 -0.4 2,623,719 + Echvi_2195 0.62 -0.6 2,623,719 + Echvi_2195 0.62 -1.6 2,623,720 - Echvi_2195 0.62 -0.8 2,623,723 + Echvi_2195 0.63 -0.5 2,623,723 + Echvi_2195 0.63 -1.2 2,623,725 + Echvi_2195 0.63 -0.4 2,623,726 - Echvi_2195 0.63 -0.0 2,623,845 + Echvi_2195 0.72 -1.2 2,623,900 + Echvi_2195 0.76 -2.3 2,623,903 - Echvi_2195 0.76 -1.2 2,623,940 + Echvi_2195 0.78 -0.3 2,624,040 + Echvi_2195 0.86 -0.1 2,624,076 - Echvi_2195 0.88 -0.4 2,624,081 - Echvi_2195 0.89 +0.0 2,624,081 - Echvi_2195 0.89 -0.9 2,624,081 - Echvi_2195 0.89 +1.5 2,624,081 - Echvi_2195 0.89 -0.1 2,624,082 + Echvi_2195 0.89 -0.4 2,624,082 + Echvi_2195 0.89 -0.8 2,624,082 + Echvi_2195 0.89 -2.5 2,624,082 + Echvi_2195 0.89 -0.6 2,624,083 - Echvi_2195 0.89 -0.2 2,624,083 - Echvi_2195 0.89 -1.5 2,624,083 - Echvi_2195 0.89 -1.0 2,624,272 - +1.5 2,624,318 + -0.5 2,624,338 - -1.0 2,624,338 - -0.0 2,624,339 + +0.6 2,624,359 - -1.7 2,624,492 - Echvi_2196 0.24 -1.2 2,624,492 - Echvi_2196 0.24 -1.4 2,624,633 + Echvi_2196 0.49 -0.4 2,624,633 + Echvi_2196 0.49 +0.1 2,624,639 + Echvi_2196 0.50 -1.6 2,624,639 + Echvi_2196 0.50 -0.4 2,624,683 - Echvi_2196 0.58 +1.2 2,624,683 - Echvi_2196 0.58 -0.2 2,624,683 - Echvi_2196 0.58 -0.7 2,624,683 - Echvi_2196 0.58 -1.5 2,624,683 - Echvi_2196 0.58 -0.3 2,624,695 + Echvi_2196 0.60 -1.5 2,624,700 + Echvi_2196 0.61 +0.4 2,624,727 + Echvi_2196 0.66 -0.6 2,624,728 - Echvi_2196 0.66 -0.9 2,624,728 - Echvi_2196 0.66 +0.7 2,624,844 - Echvi_2196 0.86 -1.3 2,624,920 + +0.4 2,624,921 - +0.5 2,624,987 + -0.5 2,624,987 + -0.5 2,624,988 - +0.0 2,624,988 - +1.7 2,625,109 + Echvi_2197 0.16 +0.1 2,625,109 + Echvi_2197 0.16 +0.2 2,625,110 - Echvi_2197 0.16 -0.5 2,625,110 - Echvi_2197 0.16 +0.1 2,625,151 - Echvi_2197 0.19 +1.1 2,625,359 + Echvi_2197 0.36 +0.7 2,625,360 - Echvi_2197 0.37 +0.1 2,625,360 - Echvi_2197 0.37 +1.0 2,625,360 - Echvi_2197 0.37 -0.5 2,625,381 + Echvi_2197 0.38 +0.6 2,625,381 + Echvi_2197 0.38 +1.8 2,625,437 + Echvi_2197 0.43 -0.5 2,625,450 + Echvi_2197 0.44 +0.6 2,625,451 - Echvi_2197 0.44 +0.4 2,625,451 - Echvi_2197 0.44 +0.1 2,625,451 - Echvi_2197 0.44 +0.2 2,625,454 + Echvi_2197 0.44 -0.6 2,625,502 - Echvi_2197 0.48 +0.7 2,625,502 - Echvi_2197 0.48 +1.7 2,625,502 - Echvi_2197 0.48 -1.2 2,625,588 - Echvi_2197 0.55 +1.0 2,625,617 - Echvi_2197 0.58 +1.8 2,625,641 + Echvi_2197 0.60 +0.8 2,625,641 + Echvi_2197 0.60 -0.9 2,625,652 + Echvi_2197 0.61 +0.6 2,625,652 + Echvi_2197 0.61 +2.0 2,625,653 - Echvi_2197 0.61 +0.9 2,625,653 - Echvi_2197 0.61 -0.2 2,625,661 - Echvi_2197 0.62 +0.7 2,625,808 - Echvi_2197 0.74 -0.7 2,625,855 + Echvi_2197 0.78 -0.6 2,625,855 + Echvi_2197 0.78 -1.4 2,625,856 - Echvi_2197 0.78 +0.5 2,625,856 - Echvi_2197 0.78 +1.0 2,625,915 + Echvi_2197 0.83 -0.4
Or see this region's nucleotide sequence