Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1984

Experiment: m.b. Cobalt chloride 0.8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1983 and Echvi_1984 overlap by 17 nucleotidesEchvi_1984 and Echvi_1985 are separated by 420 nucleotides Echvi_1983: Echvi_1983 - Molecular chaperone, HSP90 family, at 2,335,838 to 2,337,409 _1983 Echvi_1984: Echvi_1984 - DNA-methyltransferase (dcm), at 2,337,393 to 2,338,751 _1984 Echvi_1985: Echvi_1985 - hypothetical protein, at 2,339,172 to 2,339,864 _1985 Position (kb) 2337 2338 2339Strain fitness (log2 ratio) -2 -1 0 1 2at 2336.402 kb on + strand, within Echvi_1983at 2336.453 kb on - strand, within Echvi_1983at 2336.455 kb on + strand, within Echvi_1983at 2336.456 kb on - strand, within Echvi_1983at 2336.477 kb on + strand, within Echvi_1983at 2336.478 kb on - strand, within Echvi_1983at 2336.483 kb on + strand, within Echvi_1983at 2336.484 kb on - strand, within Echvi_1983at 2336.484 kb on - strand, within Echvi_1983at 2336.484 kb on - strand, within Echvi_1983at 2336.505 kb on + strand, within Echvi_1983at 2336.505 kb on + strand, within Echvi_1983at 2336.506 kb on - strand, within Echvi_1983at 2336.506 kb on - strand, within Echvi_1983at 2336.506 kb on - strand, within Echvi_1983at 2336.570 kb on - strand, within Echvi_1983at 2336.593 kb on + strand, within Echvi_1983at 2336.594 kb on - strand, within Echvi_1983at 2336.594 kb on - strand, within Echvi_1983at 2336.597 kb on + strand, within Echvi_1983at 2336.642 kb on + strand, within Echvi_1983at 2336.661 kb on - strand, within Echvi_1983at 2336.717 kb on + strand, within Echvi_1983at 2336.717 kb on + strand, within Echvi_1983at 2336.717 kb on + strand, within Echvi_1983at 2336.717 kb on + strand, within Echvi_1983at 2336.718 kb on - strand, within Echvi_1983at 2336.718 kb on - strand, within Echvi_1983at 2336.775 kb on + strand, within Echvi_1983at 2336.775 kb on + strand, within Echvi_1983at 2336.775 kb on + strand, within Echvi_1983at 2336.776 kb on - strand, within Echvi_1983at 2336.799 kb on - strand, within Echvi_1983at 2336.804 kb on + strand, within Echvi_1983at 2336.826 kb on - strand, within Echvi_1983at 2336.827 kb on + strand, within Echvi_1983at 2336.827 kb on + strand, within Echvi_1983at 2336.829 kb on + strand, within Echvi_1983at 2336.830 kb on - strand, within Echvi_1983at 2336.830 kb on - strand, within Echvi_1983at 2336.838 kb on + strand, within Echvi_1983at 2336.838 kb on + strand, within Echvi_1983at 2336.839 kb on - strand, within Echvi_1983at 2336.839 kb on - strand, within Echvi_1983at 2336.861 kb on + strand, within Echvi_1983at 2336.915 kb on + strand, within Echvi_1983at 2336.915 kb on + strand, within Echvi_1983at 2336.916 kb on - strand, within Echvi_1983at 2336.917 kb on + strand, within Echvi_1983at 2336.924 kb on - strand, within Echvi_1983at 2336.924 kb on - strand, within Echvi_1983at 2336.924 kb on - strand, within Echvi_1983at 2336.924 kb on - strand, within Echvi_1983at 2336.925 kb on + strand, within Echvi_1983at 2336.925 kb on + strand, within Echvi_1983at 2336.959 kb on + strand, within Echvi_1983at 2336.959 kb on + strand, within Echvi_1983at 2336.963 kb on + strand, within Echvi_1983at 2336.978 kb on - strandat 2336.978 kb on - strand, within Echvi_1983at 2337.047 kb on + strand, within Echvi_1983at 2337.047 kb on + strand, within Echvi_1983at 2337.061 kb on + strand, within Echvi_1983at 2337.156 kb on + strand, within Echvi_1983at 2337.157 kb on - strand, within Echvi_1983at 2337.167 kb on - strand, within Echvi_1983at 2337.191 kb on - strand, within Echvi_1983at 2337.209 kb on - strand, within Echvi_1983at 2337.209 kb on - strand, within Echvi_1983at 2337.209 kb on - strand, within Echvi_1983at 2337.211 kb on + strand, within Echvi_1983at 2337.211 kb on + strand, within Echvi_1983at 2337.212 kb on - strand, within Echvi_1983at 2337.226 kb on + strand, within Echvi_1983at 2337.230 kb on - strand, within Echvi_1983at 2337.265 kb on + strandat 2337.296 kb on + strandat 2337.297 kb on - strandat 2337.320 kb on + strandat 2337.330 kb on + strandat 2337.330 kb on + strandat 2337.331 kb on - strandat 2337.338 kb on - strandat 2337.340 kb on - strandat 2337.363 kb on - strandat 2337.368 kb on - strandat 2337.371 kb on + strandat 2337.372 kb on - strandat 2337.394 kb on + strandat 2337.425 kb on + strandat 2337.455 kb on + strandat 2337.630 kb on + strand, within Echvi_1984at 2337.707 kb on + strand, within Echvi_1984at 2337.719 kb on + strand, within Echvi_1984at 2337.721 kb on + strand, within Echvi_1984at 2337.721 kb on + strand, within Echvi_1984at 2337.818 kb on + strand, within Echvi_1984at 2337.818 kb on + strand, within Echvi_1984at 2337.827 kb on + strand, within Echvi_1984at 2337.827 kb on + strand, within Echvi_1984at 2337.829 kb on + strand, within Echvi_1984at 2338.034 kb on + strand, within Echvi_1984at 2338.076 kb on + strand, within Echvi_1984at 2338.076 kb on + strand, within Echvi_1984at 2338.253 kb on + strand, within Echvi_1984at 2338.302 kb on + strand, within Echvi_1984at 2338.302 kb on + strand, within Echvi_1984at 2338.321 kb on + strand, within Echvi_1984at 2338.321 kb on + strand, within Echvi_1984at 2338.321 kb on + strand, within Echvi_1984at 2338.354 kb on + strand, within Echvi_1984at 2338.354 kb on + strand, within Echvi_1984at 2338.354 kb on + strand, within Echvi_1984at 2338.418 kb on + strand, within Echvi_1984at 2338.615 kb on + strand, within Echvi_1984at 2338.718 kb on + strandat 2338.730 kb on + strandat 2338.730 kb on + strandat 2338.751 kb on + strandat 2338.756 kb on - strandat 2338.838 kb on - strandat 2338.838 kb on - strandat 2338.841 kb on - strandat 2338.908 kb on - strandat 2338.939 kb on + strandat 2338.940 kb on - strandat 2338.942 kb on + strandat 2338.974 kb on - strandat 2338.985 kb on + strandat 2338.985 kb on + strandat 2338.995 kb on + strandat 2338.995 kb on + strandat 2339.091 kb on + strandat 2339.104 kb on + strandat 2339.141 kb on + strandat 2339.144 kb on + strandat 2339.144 kb on + strandat 2339.145 kb on - strandat 2339.145 kb on - strandat 2339.161 kb on + strandat 2339.161 kb on + strandat 2339.161 kb on + strandat 2339.173 kb on + strandat 2339.173 kb on + strandat 2339.173 kb on + strandat 2339.173 kb on + strandat 2339.174 kb on - strandat 2339.199 kb on + strandat 2339.203 kb on + strandat 2339.204 kb on - strandat 2339.204 kb on - strandat 2339.204 kb on - strandat 2339.230 kb on - strandat 2339.247 kb on + strand, within Echvi_1985at 2339.248 kb on - strand, within Echvi_1985at 2339.248 kb on - strand, within Echvi_1985at 2339.249 kb on + strand, within Echvi_1985at 2339.249 kb on + strand, within Echvi_1985at 2339.250 kb on - strand, within Echvi_1985at 2339.250 kb on - strand, within Echvi_1985at 2339.263 kb on + strand, within Echvi_1985at 2339.263 kb on + strand, within Echvi_1985at 2339.264 kb on - strand, within Echvi_1985at 2339.267 kb on + strand, within Echvi_1985at 2339.279 kb on + strand, within Echvi_1985at 2339.279 kb on + strand, within Echvi_1985at 2339.279 kb on + strand, within Echvi_1985at 2339.279 kb on + strand, within Echvi_1985at 2339.280 kb on - strand, within Echvi_1985at 2339.280 kb on - strand, within Echvi_1985at 2339.319 kb on + strand, within Echvi_1985at 2339.320 kb on - strand, within Echvi_1985at 2339.337 kb on - strand, within Echvi_1985at 2339.339 kb on + strand, within Echvi_1985at 2339.339 kb on + strand, within Echvi_1985at 2339.340 kb on - strand, within Echvi_1985at 2339.361 kb on + strand, within Echvi_1985at 2339.374 kb on - strand, within Echvi_1985at 2339.376 kb on + strand, within Echvi_1985at 2339.403 kb on + strand, within Echvi_1985at 2339.404 kb on - strand, within Echvi_1985at 2339.404 kb on - strand, within Echvi_1985at 2339.406 kb on + strand, within Echvi_1985at 2339.435 kb on + strand, within Echvi_1985at 2339.436 kb on - strand, within Echvi_1985at 2339.471 kb on + strand, within Echvi_1985at 2339.471 kb on + strand, within Echvi_1985at 2339.471 kb on + strand, within Echvi_1985at 2339.472 kb on - strand, within Echvi_1985at 2339.497 kb on - strandat 2339.519 kb on + strand, within Echvi_1985at 2339.554 kb on - strand, within Echvi_1985at 2339.556 kb on + strand, within Echvi_1985at 2339.568 kb on + strand, within Echvi_1985at 2339.612 kb on + strand, within Echvi_1985at 2339.653 kb on - strand, within Echvi_1985at 2339.653 kb on - strand, within Echvi_1985at 2339.655 kb on + strand, within Echvi_1985at 2339.656 kb on - strand, within Echvi_1985at 2339.656 kb on - strand, within Echvi_1985at 2339.664 kb on + strand, within Echvi_1985at 2339.664 kb on + strand, within Echvi_1985at 2339.668 kb on - strand, within Echvi_1985at 2339.708 kb on + strand, within Echvi_1985at 2339.709 kb on - strand, within Echvi_1985at 2339.709 kb on - strand, within Echvi_1985at 2339.716 kb on - strand, within Echvi_1985at 2339.731 kb on - strand, within Echvi_1985

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.8 mM
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2,336,402 + Echvi_1983 0.36 -0.6
2,336,453 - Echvi_1983 0.39 +0.1
2,336,455 + Echvi_1983 0.39 -0.6
2,336,456 - Echvi_1983 0.39 +0.4
2,336,477 + Echvi_1983 0.41 +0.2
2,336,478 - Echvi_1983 0.41 +0.2
2,336,483 + Echvi_1983 0.41 +2.3
2,336,484 - Echvi_1983 0.41 -0.9
2,336,484 - Echvi_1983 0.41 -0.4
2,336,484 - Echvi_1983 0.41 -0.8
2,336,505 + Echvi_1983 0.42 +1.2
2,336,505 + Echvi_1983 0.42 +0.6
2,336,506 - Echvi_1983 0.42 -0.2
2,336,506 - Echvi_1983 0.42 +1.0
2,336,506 - Echvi_1983 0.42 -0.8
2,336,570 - Echvi_1983 0.47 +0.3
2,336,593 + Echvi_1983 0.48 +0.0
2,336,594 - Echvi_1983 0.48 -0.7
2,336,594 - Echvi_1983 0.48 -0.1
2,336,597 + Echvi_1983 0.48 +0.3
2,336,642 + Echvi_1983 0.51 -0.0
2,336,661 - Echvi_1983 0.52 -0.7
2,336,717 + Echvi_1983 0.56 +1.9
2,336,717 + Echvi_1983 0.56 +0.6
2,336,717 + Echvi_1983 0.56 -1.2
2,336,717 + Echvi_1983 0.56 -0.7
2,336,718 - Echvi_1983 0.56 +0.7
2,336,718 - Echvi_1983 0.56 +0.1
2,336,775 + Echvi_1983 0.60 +0.1
2,336,775 + Echvi_1983 0.60 +0.3
2,336,775 + Echvi_1983 0.60 -0.4
2,336,776 - Echvi_1983 0.60 +0.1
2,336,799 - Echvi_1983 0.61 -0.5
2,336,804 + Echvi_1983 0.61 +0.3
2,336,826 - Echvi_1983 0.63 -0.9
2,336,827 + Echvi_1983 0.63 -0.1
2,336,827 + Echvi_1983 0.63 -0.3
2,336,829 + Echvi_1983 0.63 -0.2
2,336,830 - Echvi_1983 0.63 +0.1
2,336,830 - Echvi_1983 0.63 -0.1
2,336,838 + Echvi_1983 0.64 +0.5
2,336,838 + Echvi_1983 0.64 +1.0
2,336,839 - Echvi_1983 0.64 +0.0
2,336,839 - Echvi_1983 0.64 -0.4
2,336,861 + Echvi_1983 0.65 +0.5
2,336,915 + Echvi_1983 0.69 +1.6
2,336,915 + Echvi_1983 0.69 -0.2
2,336,916 - Echvi_1983 0.69 -1.9
2,336,917 + Echvi_1983 0.69 -0.2
2,336,924 - Echvi_1983 0.69 -0.7
2,336,924 - Echvi_1983 0.69 -0.5
2,336,924 - Echvi_1983 0.69 +0.4
2,336,924 - Echvi_1983 0.69 -0.7
2,336,925 + Echvi_1983 0.69 +1.1
2,336,925 + Echvi_1983 0.69 +0.3
2,336,959 + Echvi_1983 0.71 +0.0
2,336,959 + Echvi_1983 0.71 -0.0
2,336,963 + Echvi_1983 0.72 -0.9
2,336,978 - +0.7
2,336,978 - Echvi_1983 0.73 -0.6
2,337,047 + Echvi_1983 0.77 +0.2
2,337,047 + Echvi_1983 0.77 -0.2
2,337,061 + Echvi_1983 0.78 -1.1
2,337,156 + Echvi_1983 0.84 +0.3
2,337,157 - Echvi_1983 0.84 -1.0
2,337,167 - Echvi_1983 0.85 -0.4
2,337,191 - Echvi_1983 0.86 -0.3
2,337,209 - Echvi_1983 0.87 +0.1
2,337,209 - Echvi_1983 0.87 +0.1
2,337,209 - Echvi_1983 0.87 -0.5
2,337,211 + Echvi_1983 0.87 +0.5
2,337,211 + Echvi_1983 0.87 +0.3
2,337,212 - Echvi_1983 0.87 +0.6
2,337,226 + Echvi_1983 0.88 +0.2
2,337,230 - Echvi_1983 0.89 -0.2
2,337,265 + +0.4
2,337,296 + -1.4
2,337,297 - -1.8
2,337,320 + -0.5
2,337,330 + +0.8
2,337,330 + +0.5
2,337,331 - -0.9
2,337,338 - -0.5
2,337,340 - -0.2
2,337,363 - +0.5
2,337,368 - -0.1
2,337,371 + +0.1
2,337,372 - -1.3
2,337,394 + -0.5
2,337,425 + +2.7
2,337,455 + +1.5
2,337,630 + Echvi_1984 0.17 +1.1
2,337,707 + Echvi_1984 0.23 -0.7
2,337,719 + Echvi_1984 0.24 -1.9
2,337,721 + Echvi_1984 0.24 -0.9
2,337,721 + Echvi_1984 0.24 -0.9
2,337,818 + Echvi_1984 0.31 -1.8
2,337,818 + Echvi_1984 0.31 +0.2
2,337,827 + Echvi_1984 0.32 +1.5
2,337,827 + Echvi_1984 0.32 +0.0
2,337,829 + Echvi_1984 0.32 +0.1
2,338,034 + Echvi_1984 0.47 -0.5
2,338,076 + Echvi_1984 0.50 -0.3
2,338,076 + Echvi_1984 0.50 -1.1
2,338,253 + Echvi_1984 0.63 +0.7
2,338,302 + Echvi_1984 0.67 -0.8
2,338,302 + Echvi_1984 0.67 -1.8
2,338,321 + Echvi_1984 0.68 -0.8
2,338,321 + Echvi_1984 0.68 +0.5
2,338,321 + Echvi_1984 0.68 -0.6
2,338,354 + Echvi_1984 0.71 -1.0
2,338,354 + Echvi_1984 0.71 +0.5
2,338,354 + Echvi_1984 0.71 -1.0
2,338,418 + Echvi_1984 0.75 -2.6
2,338,615 + Echvi_1984 0.90 -1.0
2,338,718 + -1.4
2,338,730 + -0.8
2,338,730 + -2.1
2,338,751 + +0.7
2,338,756 - -0.8
2,338,838 - -0.1
2,338,838 - -0.0
2,338,841 - -2.0
2,338,908 - -0.9
2,338,939 + -0.1
2,338,940 - -0.9
2,338,942 + -0.9
2,338,974 - +0.2
2,338,985 + -0.2
2,338,985 + -0.8
2,338,995 + -0.4
2,338,995 + +0.0
2,339,091 + +0.5
2,339,104 + -1.0
2,339,141 + -0.2
2,339,144 + -0.1
2,339,144 + -1.0
2,339,145 - +0.5
2,339,145 - +0.9
2,339,161 + -1.6
2,339,161 + -0.3
2,339,161 + +0.1
2,339,173 + +0.4
2,339,173 + -0.7
2,339,173 + +0.4
2,339,173 + -0.5
2,339,174 - -0.2
2,339,199 + -1.1
2,339,203 + -0.3
2,339,204 - +0.5
2,339,204 - -0.2
2,339,204 - +0.1
2,339,230 - -0.7
2,339,247 + Echvi_1985 0.11 +0.6
2,339,248 - Echvi_1985 0.11 +0.3
2,339,248 - Echvi_1985 0.11 -0.4
2,339,249 + Echvi_1985 0.11 +0.9
2,339,249 + Echvi_1985 0.11 +1.3
2,339,250 - Echvi_1985 0.11 +1.1
2,339,250 - Echvi_1985 0.11 -0.3
2,339,263 + Echvi_1985 0.13 -0.2
2,339,263 + Echvi_1985 0.13 +0.7
2,339,264 - Echvi_1985 0.13 -2.3
2,339,267 + Echvi_1985 0.14 +0.7
2,339,279 + Echvi_1985 0.15 -0.1
2,339,279 + Echvi_1985 0.15 -0.1
2,339,279 + Echvi_1985 0.15 +0.5
2,339,279 + Echvi_1985 0.15 +0.7
2,339,280 - Echvi_1985 0.16 -0.9
2,339,280 - Echvi_1985 0.16 +0.5
2,339,319 + Echvi_1985 0.21 +0.0
2,339,320 - Echvi_1985 0.21 +0.4
2,339,337 - Echvi_1985 0.24 -2.1
2,339,339 + Echvi_1985 0.24 -1.5
2,339,339 + Echvi_1985 0.24 -0.5
2,339,340 - Echvi_1985 0.24 -0.0
2,339,361 + Echvi_1985 0.27 -0.3
2,339,374 - Echvi_1985 0.29 -0.7
2,339,376 + Echvi_1985 0.29 -0.6
2,339,403 + Echvi_1985 0.33 +0.1
2,339,404 - Echvi_1985 0.33 -0.9
2,339,404 - Echvi_1985 0.33 -0.4
2,339,406 + Echvi_1985 0.34 +0.8
2,339,435 + Echvi_1985 0.38 +0.7
2,339,436 - Echvi_1985 0.38 -1.7
2,339,471 + Echvi_1985 0.43 +0.6
2,339,471 + Echvi_1985 0.43 -0.4
2,339,471 + Echvi_1985 0.43 -0.8
2,339,472 - Echvi_1985 0.43 +0.2
2,339,497 - +1.7
2,339,519 + Echvi_1985 0.50 -1.6
2,339,554 - Echvi_1985 0.55 -0.4
2,339,556 + Echvi_1985 0.55 -1.7
2,339,568 + Echvi_1985 0.57 -1.4
2,339,612 + Echvi_1985 0.63 -1.5
2,339,653 - Echvi_1985 0.69 +0.1
2,339,653 - Echvi_1985 0.69 -1.4
2,339,655 + Echvi_1985 0.70 -0.8
2,339,656 - Echvi_1985 0.70 +0.1
2,339,656 - Echvi_1985 0.70 -1.8
2,339,664 + Echvi_1985 0.71 +0.4
2,339,664 + Echvi_1985 0.71 -0.1
2,339,668 - Echvi_1985 0.72 +0.1
2,339,708 + Echvi_1985 0.77 -0.5
2,339,709 - Echvi_1985 0.77 -0.1
2,339,709 - Echvi_1985 0.77 -0.1
2,339,716 - Echvi_1985 0.78 -1.5
2,339,731 - Echvi_1985 0.81 +0.3

Or see this region's nucleotide sequence