Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1825

Experiment: m.b. Cobalt chloride 0.8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1823 and Echvi_1824 are separated by 60 nucleotidesEchvi_1824 and Echvi_1825 are separated by 75 nucleotidesEchvi_1825 and Echvi_1826 are separated by 1 nucleotides Echvi_1823: Echvi_1823 - ribosome biogenesis GTP-binding protein YsxC/EngB, at 2,140,684 to 2,141,289 _1823 Echvi_1824: Echvi_1824 - hypothetical protein, at 2,141,350 to 2,141,787 _1824 Echvi_1825: Echvi_1825 - hypothetical protein, at 2,141,863 to 2,142,165 _1825 Echvi_1826: Echvi_1826 - Fructose-1,6-bisphosphatase, at 2,142,167 to 2,143,198 _1826 Position (kb) 2141 2142 2143Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2141.293 kb on - strandat 2141.321 kb on - strandat 2141.337 kb on + strandat 2141.340 kb on + strandat 2141.366 kb on + strandat 2141.367 kb on - strandat 2141.367 kb on - strandat 2141.395 kb on + strand, within Echvi_1824at 2141.395 kb on + strand, within Echvi_1824at 2141.395 kb on + strand, within Echvi_1824at 2141.395 kb on + strand, within Echvi_1824at 2141.396 kb on - strand, within Echvi_1824at 2141.396 kb on - strand, within Echvi_1824at 2141.398 kb on - strand, within Echvi_1824at 2141.407 kb on - strand, within Echvi_1824at 2141.407 kb on - strand, within Echvi_1824at 2141.407 kb on - strand, within Echvi_1824at 2141.463 kb on - strand, within Echvi_1824at 2141.465 kb on + strand, within Echvi_1824at 2141.512 kb on + strand, within Echvi_1824at 2141.512 kb on + strand, within Echvi_1824at 2141.513 kb on - strand, within Echvi_1824at 2141.513 kb on - strand, within Echvi_1824at 2141.515 kb on - strand, within Echvi_1824at 2141.515 kb on - strand, within Echvi_1824at 2141.586 kb on + strand, within Echvi_1824at 2141.587 kb on - strand, within Echvi_1824at 2141.620 kb on + strand, within Echvi_1824at 2141.620 kb on + strand, within Echvi_1824at 2141.621 kb on - strand, within Echvi_1824at 2141.621 kb on - strand, within Echvi_1824at 2141.621 kb on - strand, within Echvi_1824at 2141.621 kb on - strand, within Echvi_1824at 2141.621 kb on - strand, within Echvi_1824at 2141.621 kb on - strand, within Echvi_1824at 2141.621 kb on - strand, within Echvi_1824at 2141.621 kb on - strand, within Echvi_1824at 2141.621 kb on - strand, within Echvi_1824at 2141.622 kb on + strand, within Echvi_1824at 2141.622 kb on + strand, within Echvi_1824at 2141.623 kb on - strand, within Echvi_1824at 2141.631 kb on + strand, within Echvi_1824at 2141.631 kb on + strand, within Echvi_1824at 2141.631 kb on + strand, within Echvi_1824at 2141.632 kb on - strand, within Echvi_1824at 2141.632 kb on - strand, within Echvi_1824at 2141.640 kb on + strand, within Echvi_1824at 2141.641 kb on - strand, within Echvi_1824at 2141.669 kb on + strand, within Echvi_1824at 2141.786 kb on - strandat 2141.813 kb on - strandat 2141.817 kb on - strandat 2141.868 kb on + strandat 2141.880 kb on + strandat 2141.880 kb on + strandat 2141.943 kb on - strand, within Echvi_1825at 2142.158 kb on - strandat 2142.169 kb on - strandat 2142.348 kb on + strand, within Echvi_1826at 2142.360 kb on - strand, within Echvi_1826at 2142.360 kb on - strand, within Echvi_1826at 2142.397 kb on + strand, within Echvi_1826at 2142.398 kb on - strand, within Echvi_1826at 2142.400 kb on - strand, within Echvi_1826at 2142.453 kb on + strandat 2142.454 kb on - strand, within Echvi_1826at 2142.543 kb on + strand, within Echvi_1826at 2142.544 kb on - strand, within Echvi_1826at 2142.544 kb on - strand, within Echvi_1826at 2142.544 kb on - strand, within Echvi_1826at 2142.544 kb on - strand, within Echvi_1826at 2142.546 kb on - strand, within Echvi_1826at 2142.546 kb on - strand, within Echvi_1826at 2142.546 kb on - strand, within Echvi_1826at 2142.627 kb on - strand, within Echvi_1826at 2142.670 kb on - strand, within Echvi_1826at 2142.678 kb on + strand, within Echvi_1826at 2142.678 kb on + strand, within Echvi_1826at 2142.678 kb on + strand, within Echvi_1826at 2142.678 kb on + strand, within Echvi_1826at 2142.781 kb on + strand, within Echvi_1826at 2142.782 kb on - strand, within Echvi_1826at 2142.799 kb on + strand, within Echvi_1826at 2142.837 kb on + strand, within Echvi_1826at 2142.837 kb on + strand, within Echvi_1826at 2142.978 kb on - strand, within Echvi_1826at 2142.978 kb on - strand, within Echvi_1826at 2143.073 kb on + strand, within Echvi_1826at 2143.117 kb on + strandat 2143.155 kb on + strandat 2143.160 kb on + strandat 2143.160 kb on + strandat 2143.160 kb on + strandat 2143.161 kb on - strandat 2143.161 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.8 mM
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2,141,293 - +0.2
2,141,321 - +1.8
2,141,337 + -0.2
2,141,340 + -1.5
2,141,366 + -0.9
2,141,367 - -0.4
2,141,367 - -2.2
2,141,395 + Echvi_1824 0.10 -1.2
2,141,395 + Echvi_1824 0.10 +0.1
2,141,395 + Echvi_1824 0.10 -0.9
2,141,395 + Echvi_1824 0.10 -0.3
2,141,396 - Echvi_1824 0.11 -0.2
2,141,396 - Echvi_1824 0.11 +0.2
2,141,398 - Echvi_1824 0.11 -0.5
2,141,407 - Echvi_1824 0.13 -1.1
2,141,407 - Echvi_1824 0.13 -1.1
2,141,407 - Echvi_1824 0.13 -0.0
2,141,463 - Echvi_1824 0.26 -0.2
2,141,465 + Echvi_1824 0.26 -0.9
2,141,512 + Echvi_1824 0.37 +0.5
2,141,512 + Echvi_1824 0.37 -0.5
2,141,513 - Echvi_1824 0.37 -1.2
2,141,513 - Echvi_1824 0.37 +0.2
2,141,515 - Echvi_1824 0.38 -2.1
2,141,515 - Echvi_1824 0.38 +0.0
2,141,586 + Echvi_1824 0.54 +0.3
2,141,587 - Echvi_1824 0.54 +0.6
2,141,620 + Echvi_1824 0.62 -0.4
2,141,620 + Echvi_1824 0.62 +0.1
2,141,621 - Echvi_1824 0.62 -0.7
2,141,621 - Echvi_1824 0.62 -0.3
2,141,621 - Echvi_1824 0.62 -0.2
2,141,621 - Echvi_1824 0.62 -0.8
2,141,621 - Echvi_1824 0.62 -0.9
2,141,621 - Echvi_1824 0.62 -0.0
2,141,621 - Echvi_1824 0.62 -0.9
2,141,621 - Echvi_1824 0.62 -0.5
2,141,621 - Echvi_1824 0.62 -0.0
2,141,622 + Echvi_1824 0.62 -0.7
2,141,622 + Echvi_1824 0.62 +0.6
2,141,623 - Echvi_1824 0.62 +0.6
2,141,631 + Echvi_1824 0.64 +2.0
2,141,631 + Echvi_1824 0.64 -1.6
2,141,631 + Echvi_1824 0.64 -0.3
2,141,632 - Echvi_1824 0.64 -1.3
2,141,632 - Echvi_1824 0.64 +0.6
2,141,640 + Echvi_1824 0.66 -0.7
2,141,641 - Echvi_1824 0.66 -0.1
2,141,669 + Echvi_1824 0.73 +0.6
2,141,786 - +1.3
2,141,813 - -0.8
2,141,817 - -0.8
2,141,868 + +0.7
2,141,880 + +0.5
2,141,880 + -1.3
2,141,943 - Echvi_1825 0.26 -0.5
2,142,158 - +1.1
2,142,169 - -0.1
2,142,348 + Echvi_1826 0.18 -0.6
2,142,360 - Echvi_1826 0.19 -0.7
2,142,360 - Echvi_1826 0.19 +0.4
2,142,397 + Echvi_1826 0.22 +0.7
2,142,398 - Echvi_1826 0.22 +0.0
2,142,400 - Echvi_1826 0.23 +0.4
2,142,453 + +3.7
2,142,454 - Echvi_1826 0.28 -0.0
2,142,543 + Echvi_1826 0.36 +0.5
2,142,544 - Echvi_1826 0.37 +0.9
2,142,544 - Echvi_1826 0.37 -0.6
2,142,544 - Echvi_1826 0.37 +0.0
2,142,544 - Echvi_1826 0.37 +0.7
2,142,546 - Echvi_1826 0.37 +2.4
2,142,546 - Echvi_1826 0.37 +0.2
2,142,546 - Echvi_1826 0.37 +0.2
2,142,627 - Echvi_1826 0.45 +0.3
2,142,670 - Echvi_1826 0.49 -1.0
2,142,678 + Echvi_1826 0.50 -0.3
2,142,678 + Echvi_1826 0.50 -1.2
2,142,678 + Echvi_1826 0.50 -0.8
2,142,678 + Echvi_1826 0.50 -1.9
2,142,781 + Echvi_1826 0.59 -2.0
2,142,782 - Echvi_1826 0.60 +0.0
2,142,799 + Echvi_1826 0.61 -0.5
2,142,837 + Echvi_1826 0.65 -0.8
2,142,837 + Echvi_1826 0.65 -0.4
2,142,978 - Echvi_1826 0.79 +0.1
2,142,978 - Echvi_1826 0.79 +1.2
2,143,073 + Echvi_1826 0.88 -0.1
2,143,117 + -0.5
2,143,155 + -1.3
2,143,160 + -1.7
2,143,160 + +0.4
2,143,160 + +1.3
2,143,161 - -0.1
2,143,161 - -0.7

Or see this region's nucleotide sequence