Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1511

Experiment: m.b. Cobalt chloride 0.8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1510 and Echvi_1511 overlap by 56 nucleotidesEchvi_1511 and Echvi_1512 are separated by 26 nucleotidesEchvi_1512 and Echvi_1513 are separated by 271 nucleotides Echvi_1510: Echvi_1510 - bacillithiol biosynthesis cysteine-adding enzyme BshC, at 1,733,627 to 1,735,192 _1510 Echvi_1511: Echvi_1511 - 5,10-methenyltetrahydrofolate synthetase, at 1,735,137 to 1,735,757 _1511 Echvi_1512: Echvi_1512 - hypothetical protein, at 1,735,784 to 1,736,269 _1512 Echvi_1513: Echvi_1513 - Sugar phosphate isomerases/epimerases, at 1,736,541 to 1,737,665 _1513 Position (kb) 1735 1736Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1734.208 kb on + strand, within Echvi_1510at 1734.211 kb on + strand, within Echvi_1510at 1734.398 kb on - strand, within Echvi_1510at 1734.573 kb on + strand, within Echvi_1510at 1735.137 kb on - strandat 1735.172 kb on - strandat 1735.173 kb on + strandat 1735.174 kb on - strandat 1735.204 kb on + strand, within Echvi_1511at 1735.215 kb on + strand, within Echvi_1511at 1735.215 kb on + strand, within Echvi_1511at 1735.215 kb on + strand, within Echvi_1511at 1735.216 kb on - strand, within Echvi_1511at 1735.216 kb on - strand, within Echvi_1511at 1735.216 kb on - strand, within Echvi_1511at 1735.216 kb on - strand, within Echvi_1511at 1735.216 kb on - strand, within Echvi_1511at 1735.322 kb on + strand, within Echvi_1511at 1735.323 kb on - strand, within Echvi_1511at 1735.323 kb on - strand, within Echvi_1511at 1735.410 kb on + strand, within Echvi_1511at 1735.410 kb on + strand, within Echvi_1511at 1735.410 kb on + strand, within Echvi_1511at 1735.453 kb on + strand, within Echvi_1511at 1735.469 kb on + strand, within Echvi_1511at 1735.590 kb on - strand, within Echvi_1511at 1735.590 kb on - strand, within Echvi_1511at 1735.624 kb on + strand, within Echvi_1511at 1735.649 kb on + strand, within Echvi_1511at 1735.666 kb on - strand, within Echvi_1511at 1735.666 kb on - strand, within Echvi_1511at 1735.719 kb on - strandat 1735.725 kb on - strandat 1735.756 kb on - strandat 1735.781 kb on - strandat 1735.781 kb on - strandat 1735.781 kb on - strandat 1735.781 kb on - strandat 1735.783 kb on + strandat 1735.783 kb on + strandat 1735.784 kb on - strandat 1735.789 kb on + strandat 1735.801 kb on + strandat 1735.804 kb on + strandat 1735.859 kb on + strand, within Echvi_1512at 1735.904 kb on - strand, within Echvi_1512at 1735.919 kb on - strand, within Echvi_1512at 1735.947 kb on + strand, within Echvi_1512at 1735.948 kb on - strand, within Echvi_1512at 1735.999 kb on + strand, within Echvi_1512at 1736.000 kb on - strand, within Echvi_1512at 1736.027 kb on - strand, within Echvi_1512at 1736.036 kb on + strand, within Echvi_1512at 1736.037 kb on - strand, within Echvi_1512at 1736.096 kb on + strand, within Echvi_1512at 1736.096 kb on + strand, within Echvi_1512at 1736.097 kb on - strand, within Echvi_1512at 1736.097 kb on - strand, within Echvi_1512at 1736.097 kb on - strand, within Echvi_1512at 1736.097 kb on - strand, within Echvi_1512at 1736.108 kb on + strand, within Echvi_1512at 1736.108 kb on + strand, within Echvi_1512at 1736.108 kb on + strand, within Echvi_1512at 1736.109 kb on - strand, within Echvi_1512at 1736.109 kb on - strand, within Echvi_1512at 1736.109 kb on - strand, within Echvi_1512at 1736.109 kb on - strand, within Echvi_1512at 1736.109 kb on - strand, within Echvi_1512at 1736.187 kb on - strand, within Echvi_1512at 1736.187 kb on - strand, within Echvi_1512at 1736.188 kb on + strand, within Echvi_1512at 1736.188 kb on + strand, within Echvi_1512at 1736.189 kb on - strand, within Echvi_1512at 1736.217 kb on + strand, within Echvi_1512at 1736.218 kb on - strand, within Echvi_1512at 1736.257 kb on + strandat 1736.304 kb on + strandat 1736.305 kb on - strandat 1736.305 kb on - strandat 1736.305 kb on - strandat 1736.318 kb on + strandat 1736.384 kb on + strandat 1736.385 kb on - strandat 1736.452 kb on + strandat 1736.453 kb on - strandat 1736.484 kb on + strandat 1736.485 kb on - strandat 1736.485 kb on - strandat 1736.485 kb on - strandat 1736.508 kb on + strandat 1736.508 kb on + strandat 1736.508 kb on + strandat 1736.508 kb on + strandat 1736.509 kb on - strandat 1736.509 kb on - strandat 1736.509 kb on - strandat 1736.509 kb on - strandat 1736.509 kb on - strandat 1736.526 kb on + strandat 1736.647 kb on + strandat 1736.648 kb on - strandat 1736.692 kb on + strand, within Echvi_1513at 1736.745 kb on - strand, within Echvi_1513

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.8 mM
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1,734,208 + Echvi_1510 0.37 -0.1
1,734,211 + Echvi_1510 0.37 -0.1
1,734,398 - Echvi_1510 0.49 +0.1
1,734,573 + Echvi_1510 0.60 +0.1
1,735,137 - -1.3
1,735,172 - -0.5
1,735,173 + -1.5
1,735,174 - +0.1
1,735,204 + Echvi_1511 0.11 +0.3
1,735,215 + Echvi_1511 0.13 -0.5
1,735,215 + Echvi_1511 0.13 -0.6
1,735,215 + Echvi_1511 0.13 -1.1
1,735,216 - Echvi_1511 0.13 -0.7
1,735,216 - Echvi_1511 0.13 -2.7
1,735,216 - Echvi_1511 0.13 -2.0
1,735,216 - Echvi_1511 0.13 -0.4
1,735,216 - Echvi_1511 0.13 -1.2
1,735,322 + Echvi_1511 0.30 +0.0
1,735,323 - Echvi_1511 0.30 -0.7
1,735,323 - Echvi_1511 0.30 -0.3
1,735,410 + Echvi_1511 0.44 -0.0
1,735,410 + Echvi_1511 0.44 +0.7
1,735,410 + Echvi_1511 0.44 -0.7
1,735,453 + Echvi_1511 0.51 -1.9
1,735,469 + Echvi_1511 0.53 -0.2
1,735,590 - Echvi_1511 0.73 -0.2
1,735,590 - Echvi_1511 0.73 -0.4
1,735,624 + Echvi_1511 0.78 -0.1
1,735,649 + Echvi_1511 0.82 -0.2
1,735,666 - Echvi_1511 0.85 -1.1
1,735,666 - Echvi_1511 0.85 -0.9
1,735,719 - -1.0
1,735,725 - -2.0
1,735,756 - -1.3
1,735,781 - -0.7
1,735,781 - -0.1
1,735,781 - +1.4
1,735,781 - +0.4
1,735,783 + -1.2
1,735,783 + +0.1
1,735,784 - +0.1
1,735,789 + -0.5
1,735,801 + +1.0
1,735,804 + +0.5
1,735,859 + Echvi_1512 0.15 +0.3
1,735,904 - Echvi_1512 0.25 -0.0
1,735,919 - Echvi_1512 0.28 -0.6
1,735,947 + Echvi_1512 0.34 +1.1
1,735,948 - Echvi_1512 0.34 -0.5
1,735,999 + Echvi_1512 0.44 +0.4
1,736,000 - Echvi_1512 0.44 -0.3
1,736,027 - Echvi_1512 0.50 +0.4
1,736,036 + Echvi_1512 0.52 +0.1
1,736,037 - Echvi_1512 0.52 -2.3
1,736,096 + Echvi_1512 0.64 -1.4
1,736,096 + Echvi_1512 0.64 -0.9
1,736,097 - Echvi_1512 0.64 +0.1
1,736,097 - Echvi_1512 0.64 -1.1
1,736,097 - Echvi_1512 0.64 -0.8
1,736,097 - Echvi_1512 0.64 +0.1
1,736,108 + Echvi_1512 0.67 -0.2
1,736,108 + Echvi_1512 0.67 +0.5
1,736,108 + Echvi_1512 0.67 -0.1
1,736,109 - Echvi_1512 0.67 -1.2
1,736,109 - Echvi_1512 0.67 +0.1
1,736,109 - Echvi_1512 0.67 -1.0
1,736,109 - Echvi_1512 0.67 +0.4
1,736,109 - Echvi_1512 0.67 +0.4
1,736,187 - Echvi_1512 0.83 -0.0
1,736,187 - Echvi_1512 0.83 -0.2
1,736,188 + Echvi_1512 0.83 +0.9
1,736,188 + Echvi_1512 0.83 +0.1
1,736,189 - Echvi_1512 0.83 +0.5
1,736,217 + Echvi_1512 0.89 +0.7
1,736,218 - Echvi_1512 0.89 +1.0
1,736,257 + +0.9
1,736,304 + -0.2
1,736,305 - -0.9
1,736,305 - -1.7
1,736,305 - -0.4
1,736,318 + -0.8
1,736,384 + +0.8
1,736,385 - +0.2
1,736,452 + -0.1
1,736,453 - -0.0
1,736,484 + +0.4
1,736,485 - -0.5
1,736,485 - +0.6
1,736,485 - -1.4
1,736,508 + +1.0
1,736,508 + +3.3
1,736,508 + +0.5
1,736,508 + -0.2
1,736,509 - -1.2
1,736,509 - +0.5
1,736,509 - -0.1
1,736,509 - -1.2
1,736,509 - +0.4
1,736,526 + +0.0
1,736,647 + -0.7
1,736,648 - -0.7
1,736,692 + Echvi_1513 0.13 +0.7
1,736,745 - Echvi_1513 0.18 -1.1

Or see this region's nucleotide sequence