Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1355

Experiment: m.b. Cobalt chloride 0.8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1353 and Echvi_1354 are separated by 2 nucleotidesEchvi_1354 and Echvi_1355 are separated by 11 nucleotidesEchvi_1355 and Echvi_1356 overlap by 11 nucleotidesEchvi_1356 and Echvi_1357 overlap by 4 nucleotidesEchvi_1357 and Echvi_1358 are separated by 3 nucleotides Echvi_1353: Echvi_1353 - hypothetical protein, at 1,560,742 to 1,561,500 _1353 Echvi_1354: Echvi_1354 - Bacteroides conjugative transposon TraN protein, at 1,561,503 to 1,562,348 _1354 Echvi_1355: Echvi_1355 - Bacteroides conjugative transposon TraM protein, at 1,562,360 to 1,563,604 _1355 Echvi_1356: Echvi_1356 - hypothetical protein, at 1,563,594 to 1,563,854 _1356 Echvi_1357: Echvi_1357 - Bacteroides conjugative transposon TraK protein, at 1,563,851 to 1,564,468 _1357 Echvi_1358: Echvi_1358 - Bacteroides conjugative transposon TraJ protein, at 1,564,472 to 1,565,449 _1358 Position (kb) 1562 1563 1564Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1561.432 kb on - strandat 1561.457 kb on + strandat 1561.457 kb on + strandat 1561.458 kb on - strandat 1561.458 kb on - strandat 1561.474 kb on + strandat 1561.597 kb on - strand, within Echvi_1354at 1561.597 kb on - strand, within Echvi_1354at 1561.602 kb on + strand, within Echvi_1354at 1561.602 kb on + strand, within Echvi_1354at 1561.769 kb on + strand, within Echvi_1354at 1561.836 kb on + strand, within Echvi_1354at 1561.837 kb on - strand, within Echvi_1354at 1561.853 kb on - strand, within Echvi_1354at 1561.875 kb on + strand, within Echvi_1354at 1562.066 kb on - strand, within Echvi_1354at 1562.099 kb on + strand, within Echvi_1354at 1562.100 kb on - strand, within Echvi_1354at 1562.130 kb on + strand, within Echvi_1354at 1562.130 kb on + strand, within Echvi_1354at 1562.130 kb on + strand, within Echvi_1354at 1562.139 kb on + strand, within Echvi_1354at 1562.203 kb on - strand, within Echvi_1354at 1562.223 kb on + strand, within Echvi_1354at 1562.244 kb on + strand, within Echvi_1354at 1562.245 kb on - strand, within Echvi_1354at 1562.245 kb on - strand, within Echvi_1354at 1562.245 kb on - strand, within Echvi_1354at 1562.319 kb on + strandat 1562.320 kb on - strandat 1562.320 kb on - strandat 1562.332 kb on - strandat 1562.374 kb on + strandat 1562.374 kb on + strandat 1562.505 kb on + strand, within Echvi_1355at 1562.505 kb on + strand, within Echvi_1355at 1562.506 kb on - strand, within Echvi_1355at 1562.506 kb on - strand, within Echvi_1355at 1562.506 kb on - strand, within Echvi_1355at 1562.767 kb on + strand, within Echvi_1355at 1563.006 kb on - strand, within Echvi_1355at 1563.053 kb on + strand, within Echvi_1355at 1563.094 kb on + strand, within Echvi_1355at 1563.095 kb on - strand, within Echvi_1355at 1563.609 kb on + strandat 1563.609 kb on + strandat 1563.609 kb on + strandat 1563.610 kb on - strandat 1563.628 kb on + strand, within Echvi_1356at 1563.683 kb on + strand, within Echvi_1356at 1563.707 kb on + strand, within Echvi_1356at 1563.708 kb on - strand, within Echvi_1356at 1564.014 kb on + strand, within Echvi_1357at 1564.017 kb on + strand, within Echvi_1357at 1564.018 kb on - strand, within Echvi_1357at 1564.018 kb on - strand, within Echvi_1357at 1564.018 kb on - strand, within Echvi_1357at 1564.107 kb on + strand, within Echvi_1357at 1564.110 kb on + strand, within Echvi_1357at 1564.124 kb on + strand, within Echvi_1357at 1564.125 kb on - strand, within Echvi_1357at 1564.125 kb on - strand, within Echvi_1357at 1564.134 kb on + strand, within Echvi_1357at 1564.163 kb on - strand, within Echvi_1357at 1564.193 kb on - strand, within Echvi_1357at 1564.241 kb on + strand, within Echvi_1357at 1564.242 kb on - strand, within Echvi_1357at 1564.242 kb on - strand, within Echvi_1357at 1564.242 kb on - strand, within Echvi_1357at 1564.242 kb on - strand, within Echvi_1357at 1564.242 kb on - strand, within Echvi_1357at 1564.321 kb on + strand, within Echvi_1357at 1564.321 kb on + strand, within Echvi_1357at 1564.321 kb on + strand, within Echvi_1357at 1564.322 kb on - strand, within Echvi_1357at 1564.322 kb on - strand, within Echvi_1357at 1564.322 kb on - strand, within Echvi_1357at 1564.322 kb on - strand, within Echvi_1357at 1564.323 kb on + strand, within Echvi_1357at 1564.323 kb on + strand, within Echvi_1357at 1564.324 kb on - strand, within Echvi_1357at 1564.325 kb on + strand, within Echvi_1357at 1564.325 kb on + strand, within Echvi_1357at 1564.325 kb on + strand, within Echvi_1357at 1564.325 kb on + strand, within Echvi_1357at 1564.326 kb on - strand, within Echvi_1357at 1564.326 kb on - strand, within Echvi_1357at 1564.326 kb on - strand, within Echvi_1357at 1564.364 kb on - strand, within Echvi_1357at 1564.372 kb on + strand, within Echvi_1357at 1564.403 kb on - strand, within Echvi_1357at 1564.445 kb on + strandat 1564.445 kb on + strandat 1564.463 kb on - strandat 1564.468 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.8 mM
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1,561,432 - -0.1
1,561,457 + -0.5
1,561,457 + -0.0
1,561,458 - -0.9
1,561,458 - -0.3
1,561,474 + +1.0
1,561,597 - Echvi_1354 0.11 +0.5
1,561,597 - Echvi_1354 0.11 +1.1
1,561,602 + Echvi_1354 0.12 -0.7
1,561,602 + Echvi_1354 0.12 -0.7
1,561,769 + Echvi_1354 0.31 +0.5
1,561,836 + Echvi_1354 0.39 -0.0
1,561,837 - Echvi_1354 0.39 -1.8
1,561,853 - Echvi_1354 0.41 +0.4
1,561,875 + Echvi_1354 0.44 -1.4
1,562,066 - Echvi_1354 0.67 -1.6
1,562,099 + Echvi_1354 0.70 -1.7
1,562,100 - Echvi_1354 0.71 -0.1
1,562,130 + Echvi_1354 0.74 +1.5
1,562,130 + Echvi_1354 0.74 -1.0
1,562,130 + Echvi_1354 0.74 -0.9
1,562,139 + Echvi_1354 0.75 +1.5
1,562,203 - Echvi_1354 0.83 -1.2
1,562,223 + Echvi_1354 0.85 +1.6
1,562,244 + Echvi_1354 0.88 -0.2
1,562,245 - Echvi_1354 0.88 -0.2
1,562,245 - Echvi_1354 0.88 +0.5
1,562,245 - Echvi_1354 0.88 -0.4
1,562,319 + +0.1
1,562,320 - -0.8
1,562,320 - +0.2
1,562,332 - -1.2
1,562,374 + -1.5
1,562,374 + +0.2
1,562,505 + Echvi_1355 0.12 -0.9
1,562,505 + Echvi_1355 0.12 +1.8
1,562,506 - Echvi_1355 0.12 -2.1
1,562,506 - Echvi_1355 0.12 -0.5
1,562,506 - Echvi_1355 0.12 -0.1
1,562,767 + Echvi_1355 0.33 -1.3
1,563,006 - Echvi_1355 0.52 -1.2
1,563,053 + Echvi_1355 0.56 -1.3
1,563,094 + Echvi_1355 0.59 +0.1
1,563,095 - Echvi_1355 0.59 -0.0
1,563,609 + -0.4
1,563,609 + +0.3
1,563,609 + +0.1
1,563,610 - +0.2
1,563,628 + Echvi_1356 0.13 -0.1
1,563,683 + Echvi_1356 0.34 +0.2
1,563,707 + Echvi_1356 0.43 -1.8
1,563,708 - Echvi_1356 0.44 +0.8
1,564,014 + Echvi_1357 0.26 +1.1
1,564,017 + Echvi_1357 0.27 -0.1
1,564,018 - Echvi_1357 0.27 -1.2
1,564,018 - Echvi_1357 0.27 +2.3
1,564,018 - Echvi_1357 0.27 +1.5
1,564,107 + Echvi_1357 0.41 -1.6
1,564,110 + Echvi_1357 0.42 -0.6
1,564,124 + Echvi_1357 0.44 +0.5
1,564,125 - Echvi_1357 0.44 -0.1
1,564,125 - Echvi_1357 0.44 -0.8
1,564,134 + Echvi_1357 0.46 +1.2
1,564,163 - Echvi_1357 0.50 +0.4
1,564,193 - Echvi_1357 0.55 +1.1
1,564,241 + Echvi_1357 0.63 +0.3
1,564,242 - Echvi_1357 0.63 +0.8
1,564,242 - Echvi_1357 0.63 +0.9
1,564,242 - Echvi_1357 0.63 -1.8
1,564,242 - Echvi_1357 0.63 -0.1
1,564,242 - Echvi_1357 0.63 -3.0
1,564,321 + Echvi_1357 0.76 +0.9
1,564,321 + Echvi_1357 0.76 -0.5
1,564,321 + Echvi_1357 0.76 +1.4
1,564,322 - Echvi_1357 0.76 -0.9
1,564,322 - Echvi_1357 0.76 -0.5
1,564,322 - Echvi_1357 0.76 -0.7
1,564,322 - Echvi_1357 0.76 +0.4
1,564,323 + Echvi_1357 0.76 -1.8
1,564,323 + Echvi_1357 0.76 +1.4
1,564,324 - Echvi_1357 0.77 -0.3
1,564,325 + Echvi_1357 0.77 -0.4
1,564,325 + Echvi_1357 0.77 -1.0
1,564,325 + Echvi_1357 0.77 +0.5
1,564,325 + Echvi_1357 0.77 +1.3
1,564,326 - Echvi_1357 0.77 -1.5
1,564,326 - Echvi_1357 0.77 +1.5
1,564,326 - Echvi_1357 0.77 -1.1
1,564,364 - Echvi_1357 0.83 +0.6
1,564,372 + Echvi_1357 0.84 +0.6
1,564,403 - Echvi_1357 0.89 +2.0
1,564,445 + +0.3
1,564,445 + +1.9
1,564,463 - -0.9
1,564,468 + +2.7

Or see this region's nucleotide sequence