Experiment: m.b. Cobalt chloride 0.8 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1353 and Echvi_1354 are separated by 2 nucleotides Echvi_1354 and Echvi_1355 are separated by 11 nucleotides Echvi_1355 and Echvi_1356 overlap by 11 nucleotides Echvi_1356 and Echvi_1357 overlap by 4 nucleotides Echvi_1357 and Echvi_1358 are separated by 3 nucleotides
Echvi_1353: Echvi_1353 - hypothetical protein, at 1,560,742 to 1,561,500
_1353
Echvi_1354: Echvi_1354 - Bacteroides conjugative transposon TraN protein, at 1,561,503 to 1,562,348
_1354
Echvi_1355: Echvi_1355 - Bacteroides conjugative transposon TraM protein, at 1,562,360 to 1,563,604
_1355
Echvi_1356: Echvi_1356 - hypothetical protein, at 1,563,594 to 1,563,854
_1356
Echvi_1357: Echvi_1357 - Bacteroides conjugative transposon TraK protein, at 1,563,851 to 1,564,468
_1357
Echvi_1358: Echvi_1358 - Bacteroides conjugative transposon TraJ protein, at 1,564,472 to 1,565,449
_1358
Position (kb)
1562
1563
1564 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1561.432 kb on - strand at 1561.457 kb on + strand at 1561.457 kb on + strand at 1561.458 kb on - strand at 1561.458 kb on - strand at 1561.474 kb on + strand at 1561.597 kb on - strand, within Echvi_1354 at 1561.597 kb on - strand, within Echvi_1354 at 1561.602 kb on + strand, within Echvi_1354 at 1561.602 kb on + strand, within Echvi_1354 at 1561.769 kb on + strand, within Echvi_1354 at 1561.836 kb on + strand, within Echvi_1354 at 1561.837 kb on - strand, within Echvi_1354 at 1561.853 kb on - strand, within Echvi_1354 at 1561.875 kb on + strand, within Echvi_1354 at 1562.066 kb on - strand, within Echvi_1354 at 1562.099 kb on + strand, within Echvi_1354 at 1562.100 kb on - strand, within Echvi_1354 at 1562.130 kb on + strand, within Echvi_1354 at 1562.130 kb on + strand, within Echvi_1354 at 1562.130 kb on + strand, within Echvi_1354 at 1562.139 kb on + strand, within Echvi_1354 at 1562.203 kb on - strand, within Echvi_1354 at 1562.223 kb on + strand, within Echvi_1354 at 1562.244 kb on + strand, within Echvi_1354 at 1562.245 kb on - strand, within Echvi_1354 at 1562.245 kb on - strand, within Echvi_1354 at 1562.245 kb on - strand, within Echvi_1354 at 1562.319 kb on + strand at 1562.320 kb on - strand at 1562.320 kb on - strand at 1562.332 kb on - strand at 1562.374 kb on + strand at 1562.374 kb on + strand at 1562.505 kb on + strand, within Echvi_1355 at 1562.505 kb on + strand, within Echvi_1355 at 1562.506 kb on - strand, within Echvi_1355 at 1562.506 kb on - strand, within Echvi_1355 at 1562.506 kb on - strand, within Echvi_1355 at 1562.767 kb on + strand, within Echvi_1355 at 1563.006 kb on - strand, within Echvi_1355 at 1563.053 kb on + strand, within Echvi_1355 at 1563.094 kb on + strand, within Echvi_1355 at 1563.095 kb on - strand, within Echvi_1355 at 1563.609 kb on + strand at 1563.609 kb on + strand at 1563.609 kb on + strand at 1563.610 kb on - strand at 1563.628 kb on + strand, within Echvi_1356 at 1563.683 kb on + strand, within Echvi_1356 at 1563.707 kb on + strand, within Echvi_1356 at 1563.708 kb on - strand, within Echvi_1356 at 1564.014 kb on + strand, within Echvi_1357 at 1564.017 kb on + strand, within Echvi_1357 at 1564.018 kb on - strand, within Echvi_1357 at 1564.018 kb on - strand, within Echvi_1357 at 1564.018 kb on - strand, within Echvi_1357 at 1564.107 kb on + strand, within Echvi_1357 at 1564.110 kb on + strand, within Echvi_1357 at 1564.124 kb on + strand, within Echvi_1357 at 1564.125 kb on - strand, within Echvi_1357 at 1564.125 kb on - strand, within Echvi_1357 at 1564.134 kb on + strand, within Echvi_1357 at 1564.163 kb on - strand, within Echvi_1357 at 1564.193 kb on - strand, within Echvi_1357 at 1564.241 kb on + strand, within Echvi_1357 at 1564.242 kb on - strand, within Echvi_1357 at 1564.242 kb on - strand, within Echvi_1357 at 1564.242 kb on - strand, within Echvi_1357 at 1564.242 kb on - strand, within Echvi_1357 at 1564.242 kb on - strand, within Echvi_1357 at 1564.321 kb on + strand, within Echvi_1357 at 1564.321 kb on + strand, within Echvi_1357 at 1564.321 kb on + strand, within Echvi_1357 at 1564.322 kb on - strand, within Echvi_1357 at 1564.322 kb on - strand, within Echvi_1357 at 1564.322 kb on - strand, within Echvi_1357 at 1564.322 kb on - strand, within Echvi_1357 at 1564.323 kb on + strand, within Echvi_1357 at 1564.323 kb on + strand, within Echvi_1357 at 1564.324 kb on - strand, within Echvi_1357 at 1564.325 kb on + strand, within Echvi_1357 at 1564.325 kb on + strand, within Echvi_1357 at 1564.325 kb on + strand, within Echvi_1357 at 1564.325 kb on + strand, within Echvi_1357 at 1564.326 kb on - strand, within Echvi_1357 at 1564.326 kb on - strand, within Echvi_1357 at 1564.326 kb on - strand, within Echvi_1357 at 1564.364 kb on - strand, within Echvi_1357 at 1564.372 kb on + strand, within Echvi_1357 at 1564.403 kb on - strand, within Echvi_1357 at 1564.445 kb on + strand at 1564.445 kb on + strand at 1564.463 kb on - strand at 1564.468 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.8 mM remove 1,561,432 - -0.1 1,561,457 + -0.5 1,561,457 + -0.0 1,561,458 - -0.9 1,561,458 - -0.3 1,561,474 + +1.0 1,561,597 - Echvi_1354 0.11 +0.5 1,561,597 - Echvi_1354 0.11 +1.1 1,561,602 + Echvi_1354 0.12 -0.7 1,561,602 + Echvi_1354 0.12 -0.7 1,561,769 + Echvi_1354 0.31 +0.5 1,561,836 + Echvi_1354 0.39 -0.0 1,561,837 - Echvi_1354 0.39 -1.8 1,561,853 - Echvi_1354 0.41 +0.4 1,561,875 + Echvi_1354 0.44 -1.4 1,562,066 - Echvi_1354 0.67 -1.6 1,562,099 + Echvi_1354 0.70 -1.7 1,562,100 - Echvi_1354 0.71 -0.1 1,562,130 + Echvi_1354 0.74 +1.5 1,562,130 + Echvi_1354 0.74 -1.0 1,562,130 + Echvi_1354 0.74 -0.9 1,562,139 + Echvi_1354 0.75 +1.5 1,562,203 - Echvi_1354 0.83 -1.2 1,562,223 + Echvi_1354 0.85 +1.6 1,562,244 + Echvi_1354 0.88 -0.2 1,562,245 - Echvi_1354 0.88 -0.2 1,562,245 - Echvi_1354 0.88 +0.5 1,562,245 - Echvi_1354 0.88 -0.4 1,562,319 + +0.1 1,562,320 - -0.8 1,562,320 - +0.2 1,562,332 - -1.2 1,562,374 + -1.5 1,562,374 + +0.2 1,562,505 + Echvi_1355 0.12 -0.9 1,562,505 + Echvi_1355 0.12 +1.8 1,562,506 - Echvi_1355 0.12 -2.1 1,562,506 - Echvi_1355 0.12 -0.5 1,562,506 - Echvi_1355 0.12 -0.1 1,562,767 + Echvi_1355 0.33 -1.3 1,563,006 - Echvi_1355 0.52 -1.2 1,563,053 + Echvi_1355 0.56 -1.3 1,563,094 + Echvi_1355 0.59 +0.1 1,563,095 - Echvi_1355 0.59 -0.0 1,563,609 + -0.4 1,563,609 + +0.3 1,563,609 + +0.1 1,563,610 - +0.2 1,563,628 + Echvi_1356 0.13 -0.1 1,563,683 + Echvi_1356 0.34 +0.2 1,563,707 + Echvi_1356 0.43 -1.8 1,563,708 - Echvi_1356 0.44 +0.8 1,564,014 + Echvi_1357 0.26 +1.1 1,564,017 + Echvi_1357 0.27 -0.1 1,564,018 - Echvi_1357 0.27 -1.2 1,564,018 - Echvi_1357 0.27 +2.3 1,564,018 - Echvi_1357 0.27 +1.5 1,564,107 + Echvi_1357 0.41 -1.6 1,564,110 + Echvi_1357 0.42 -0.6 1,564,124 + Echvi_1357 0.44 +0.5 1,564,125 - Echvi_1357 0.44 -0.1 1,564,125 - Echvi_1357 0.44 -0.8 1,564,134 + Echvi_1357 0.46 +1.2 1,564,163 - Echvi_1357 0.50 +0.4 1,564,193 - Echvi_1357 0.55 +1.1 1,564,241 + Echvi_1357 0.63 +0.3 1,564,242 - Echvi_1357 0.63 +0.8 1,564,242 - Echvi_1357 0.63 +0.9 1,564,242 - Echvi_1357 0.63 -1.8 1,564,242 - Echvi_1357 0.63 -0.1 1,564,242 - Echvi_1357 0.63 -3.0 1,564,321 + Echvi_1357 0.76 +0.9 1,564,321 + Echvi_1357 0.76 -0.5 1,564,321 + Echvi_1357 0.76 +1.4 1,564,322 - Echvi_1357 0.76 -0.9 1,564,322 - Echvi_1357 0.76 -0.5 1,564,322 - Echvi_1357 0.76 -0.7 1,564,322 - Echvi_1357 0.76 +0.4 1,564,323 + Echvi_1357 0.76 -1.8 1,564,323 + Echvi_1357 0.76 +1.4 1,564,324 - Echvi_1357 0.77 -0.3 1,564,325 + Echvi_1357 0.77 -0.4 1,564,325 + Echvi_1357 0.77 -1.0 1,564,325 + Echvi_1357 0.77 +0.5 1,564,325 + Echvi_1357 0.77 +1.3 1,564,326 - Echvi_1357 0.77 -1.5 1,564,326 - Echvi_1357 0.77 +1.5 1,564,326 - Echvi_1357 0.77 -1.1 1,564,364 - Echvi_1357 0.83 +0.6 1,564,372 + Echvi_1357 0.84 +0.6 1,564,403 - Echvi_1357 0.89 +2.0 1,564,445 + +0.3 1,564,445 + +1.9 1,564,463 - -0.9 1,564,468 + +2.7
Or see this region's nucleotide sequence