Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1297

Experiment: m.b. Cobalt chloride 0.8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1296 and Echvi_1297 are separated by 78 nucleotidesEchvi_1297 and Echvi_1298 are separated by 71 nucleotides Echvi_1296: Echvi_1296 - glutamyl-tRNA synthetase, bacterial family, at 1,491,892 to 1,493,433 _1296 Echvi_1297: Echvi_1297 - hypothetical protein, at 1,493,512 to 1,493,715 _1297 Echvi_1298: Echvi_1298 - hypothetical protein, at 1,493,787 to 1,494,470 _1298 Position (kb) 1493 1494Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1493.431 kb on + strandat 1493.432 kb on - strandat 1493.436 kb on + strandat 1493.471 kb on + strandat 1493.471 kb on + strandat 1493.471 kb on + strandat 1493.471 kb on + strandat 1493.471 kb on + strandat 1493.472 kb on - strandat 1493.475 kb on + strandat 1493.476 kb on - strandat 1493.492 kb on - strandat 1493.600 kb on + strand, within Echvi_1297at 1493.601 kb on - strand, within Echvi_1297at 1493.601 kb on - strand, within Echvi_1297at 1493.622 kb on + strand, within Echvi_1297at 1493.622 kb on + strand, within Echvi_1297at 1493.623 kb on - strand, within Echvi_1297at 1493.668 kb on - strand, within Echvi_1297at 1493.754 kb on - strandat 1493.765 kb on + strandat 1493.774 kb on + strandat 1493.774 kb on + strandat 1493.778 kb on + strandat 1493.778 kb on + strandat 1493.833 kb on + strandat 1493.916 kb on + strand, within Echvi_1298at 1493.950 kb on + strand, within Echvi_1298at 1493.950 kb on + strand, within Echvi_1298at 1493.976 kb on + strand, within Echvi_1298at 1493.976 kb on + strand, within Echvi_1298at 1493.977 kb on - strand, within Echvi_1298at 1493.977 kb on - strand, within Echvi_1298at 1493.997 kb on + strand, within Echvi_1298at 1493.997 kb on + strand, within Echvi_1298at 1493.997 kb on + strand, within Echvi_1298at 1494.036 kb on + strand, within Echvi_1298at 1494.037 kb on - strand, within Echvi_1298at 1494.051 kb on + strand, within Echvi_1298at 1494.102 kb on + strand, within Echvi_1298at 1494.102 kb on + strand, within Echvi_1298at 1494.132 kb on + strand, within Echvi_1298at 1494.231 kb on - strand, within Echvi_1298at 1494.252 kb on - strand, within Echvi_1298at 1494.256 kb on - strand, within Echvi_1298at 1494.288 kb on - strand, within Echvi_1298at 1494.291 kb on + strand, within Echvi_1298at 1494.291 kb on + strand, within Echvi_1298at 1494.292 kb on - strand, within Echvi_1298at 1494.314 kb on + strand, within Echvi_1298at 1494.315 kb on - strand, within Echvi_1298at 1494.315 kb on - strand, within Echvi_1298at 1494.332 kb on + strand, within Echvi_1298at 1494.355 kb on + strand, within Echvi_1298at 1494.355 kb on + strand, within Echvi_1298at 1494.356 kb on - strand, within Echvi_1298at 1494.366 kb on + strand, within Echvi_1298at 1494.366 kb on + strand, within Echvi_1298at 1494.367 kb on - strand, within Echvi_1298at 1494.441 kb on + strandat 1494.454 kb on + strandat 1494.455 kb on - strandat 1494.468 kb on + strandat 1494.495 kb on + strandat 1494.499 kb on + strandat 1494.499 kb on + strandat 1494.499 kb on + strandat 1494.499 kb on + strandat 1494.500 kb on - strandat 1494.500 kb on - strandat 1494.500 kb on - strandat 1494.554 kb on + strandat 1494.584 kb on + strandat 1494.585 kb on - strandat 1494.663 kb on + strandat 1494.663 kb on + strandat 1494.664 kb on - strandat 1494.677 kb on + strandat 1494.678 kb on - strandat 1494.701 kb on + strandat 1494.702 kb on - strandat 1494.702 kb on - strandat 1494.705 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.8 mM
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1,493,431 + -1.1
1,493,432 - +0.6
1,493,436 + +0.3
1,493,471 + -0.3
1,493,471 + -0.4
1,493,471 + +1.3
1,493,471 + +0.2
1,493,471 + -0.9
1,493,472 - -1.3
1,493,475 + +0.5
1,493,476 - -0.7
1,493,492 - +0.4
1,493,600 + Echvi_1297 0.43 -0.6
1,493,601 - Echvi_1297 0.44 -2.2
1,493,601 - Echvi_1297 0.44 -1.4
1,493,622 + Echvi_1297 0.54 -2.4
1,493,622 + Echvi_1297 0.54 -0.9
1,493,623 - Echvi_1297 0.54 -0.4
1,493,668 - Echvi_1297 0.76 -1.3
1,493,754 - -0.2
1,493,765 + +0.6
1,493,774 + -0.5
1,493,774 + +0.5
1,493,778 + +2.0
1,493,778 + -0.8
1,493,833 + -0.4
1,493,916 + Echvi_1298 0.19 +0.5
1,493,950 + Echvi_1298 0.24 +0.1
1,493,950 + Echvi_1298 0.24 +1.5
1,493,976 + Echvi_1298 0.28 -0.1
1,493,976 + Echvi_1298 0.28 +0.4
1,493,977 - Echvi_1298 0.28 -0.7
1,493,977 - Echvi_1298 0.28 -1.8
1,493,997 + Echvi_1298 0.31 +0.3
1,493,997 + Echvi_1298 0.31 -0.2
1,493,997 + Echvi_1298 0.31 +0.9
1,494,036 + Echvi_1298 0.36 +0.0
1,494,037 - Echvi_1298 0.37 -0.9
1,494,051 + Echvi_1298 0.39 +1.0
1,494,102 + Echvi_1298 0.46 -1.2
1,494,102 + Echvi_1298 0.46 -1.6
1,494,132 + Echvi_1298 0.50 -0.1
1,494,231 - Echvi_1298 0.65 -1.2
1,494,252 - Echvi_1298 0.68 -1.6
1,494,256 - Echvi_1298 0.69 -0.0
1,494,288 - Echvi_1298 0.73 +0.2
1,494,291 + Echvi_1298 0.74 -1.8
1,494,291 + Echvi_1298 0.74 -0.1
1,494,292 - Echvi_1298 0.74 -3.0
1,494,314 + Echvi_1298 0.77 +2.7
1,494,315 - Echvi_1298 0.77 -0.9
1,494,315 - Echvi_1298 0.77 +0.9
1,494,332 + Echvi_1298 0.80 +0.8
1,494,355 + Echvi_1298 0.83 -1.1
1,494,355 + Echvi_1298 0.83 -0.2
1,494,356 - Echvi_1298 0.83 -0.6
1,494,366 + Echvi_1298 0.85 -0.3
1,494,366 + Echvi_1298 0.85 +0.7
1,494,367 - Echvi_1298 0.85 -0.1
1,494,441 + -0.5
1,494,454 + -1.4
1,494,455 - -0.9
1,494,468 + +2.1
1,494,495 + -0.4
1,494,499 + +0.7
1,494,499 + -0.3
1,494,499 + -0.8
1,494,499 + +1.5
1,494,500 - -1.6
1,494,500 - -0.2
1,494,500 - +0.3
1,494,554 + +0.3
1,494,584 + +1.3
1,494,585 - +0.1
1,494,663 + +0.6
1,494,663 + -0.2
1,494,664 - +0.5
1,494,677 + +0.2
1,494,678 - -0.9
1,494,701 + +1.2
1,494,702 - -0.6
1,494,702 - -0.0
1,494,705 + +0.3

Or see this region's nucleotide sequence