Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1280

Experiment: m.b. Cobalt chloride 0.8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1279 and Echvi_1280 are separated by 85 nucleotidesEchvi_1280 and Echvi_1281 overlap by 17 nucleotidesEchvi_1281 and Echvi_1282 are separated by 14 nucleotides Echvi_1279: Echvi_1279 - Glycerol kinase, at 1,467,458 to 1,468,960 _1279 Echvi_1280: Echvi_1280 - Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components, at 1,469,046 to 1,470,002 _1280 Echvi_1281: Echvi_1281 - hypothetical protein, at 1,469,986 to 1,470,183 _1281 Echvi_1282: Echvi_1282 - ABC-type sugar transport system, ATPase component, at 1,470,198 to 1,471,706 _1282 Position (kb) 1469 1470 1471Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1468.050 kb on + strand, within Echvi_1279at 1468.050 kb on + strand, within Echvi_1279at 1468.088 kb on + strand, within Echvi_1279at 1468.088 kb on + strand, within Echvi_1279at 1468.088 kb on + strand, within Echvi_1279at 1468.088 kb on + strand, within Echvi_1279at 1468.088 kb on + strand, within Echvi_1279at 1468.089 kb on - strand, within Echvi_1279at 1468.089 kb on - strand, within Echvi_1279at 1468.089 kb on - strand, within Echvi_1279at 1468.089 kb on - strand, within Echvi_1279at 1468.089 kb on - strand, within Echvi_1279at 1468.111 kb on + strand, within Echvi_1279at 1468.330 kb on + strand, within Echvi_1279at 1468.413 kb on + strand, within Echvi_1279at 1468.442 kb on + strand, within Echvi_1279at 1468.451 kb on - strand, within Echvi_1279at 1468.467 kb on + strand, within Echvi_1279at 1468.517 kb on + strand, within Echvi_1279at 1468.534 kb on + strand, within Echvi_1279at 1468.571 kb on - strand, within Echvi_1279at 1468.726 kb on + strand, within Echvi_1279at 1468.726 kb on + strand, within Echvi_1279at 1468.775 kb on + strand, within Echvi_1279at 1468.910 kb on - strandat 1468.918 kb on + strandat 1468.918 kb on + strandat 1468.919 kb on - strandat 1469.021 kb on + strandat 1469.021 kb on + strandat 1469.022 kb on - strandat 1469.028 kb on - strandat 1469.028 kb on - strandat 1469.038 kb on + strandat 1469.038 kb on + strandat 1469.263 kb on + strand, within Echvi_1280at 1469.428 kb on + strand, within Echvi_1280at 1469.428 kb on + strand, within Echvi_1280at 1469.642 kb on + strand, within Echvi_1280at 1469.688 kb on + strand, within Echvi_1280at 1469.715 kb on + strand, within Echvi_1280at 1469.942 kb on + strandat 1469.942 kb on + strandat 1469.942 kb on + strandat 1469.942 kb on + strandat 1469.942 kb on + strandat 1469.942 kb on + strandat 1469.942 kb on + strandat 1470.017 kb on + strand, within Echvi_1281at 1470.017 kb on + strand, within Echvi_1281at 1470.018 kb on - strand, within Echvi_1281at 1470.037 kb on + strand, within Echvi_1281at 1470.037 kb on + strand, within Echvi_1281at 1470.044 kb on + strand, within Echvi_1281at 1470.052 kb on + strand, within Echvi_1281at 1470.052 kb on + strand, within Echvi_1281at 1470.085 kb on + strand, within Echvi_1281at 1470.085 kb on + strand, within Echvi_1281at 1470.085 kb on + strand, within Echvi_1281at 1470.106 kb on + strand, within Echvi_1281at 1470.108 kb on + strand, within Echvi_1281at 1470.108 kb on + strand, within Echvi_1281at 1470.108 kb on + strand, within Echvi_1281at 1470.108 kb on + strand, within Echvi_1281at 1470.122 kb on - strand, within Echvi_1281at 1470.141 kb on + strand, within Echvi_1281at 1470.345 kb on + strandat 1470.345 kb on + strandat 1470.389 kb on + strand, within Echvi_1282at 1470.443 kb on + strand, within Echvi_1282at 1470.549 kb on + strand, within Echvi_1282at 1470.597 kb on + strand, within Echvi_1282at 1470.597 kb on + strand, within Echvi_1282at 1470.597 kb on + strand, within Echvi_1282at 1470.597 kb on + strand, within Echvi_1282at 1470.598 kb on - strand, within Echvi_1282at 1470.620 kb on + strand, within Echvi_1282at 1470.620 kb on + strand, within Echvi_1282at 1470.620 kb on + strand, within Echvi_1282at 1470.620 kb on + strand, within Echvi_1282at 1470.621 kb on - strand, within Echvi_1282at 1470.624 kb on + strand, within Echvi_1282at 1470.624 kb on + strand, within Echvi_1282at 1470.818 kb on + strand, within Echvi_1282at 1470.819 kb on - strand, within Echvi_1282

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.8 mM
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1,468,050 + Echvi_1279 0.39 -0.0
1,468,050 + Echvi_1279 0.39 -0.1
1,468,088 + Echvi_1279 0.42 -0.3
1,468,088 + Echvi_1279 0.42 +1.1
1,468,088 + Echvi_1279 0.42 +0.0
1,468,088 + Echvi_1279 0.42 -0.0
1,468,088 + Echvi_1279 0.42 -1.3
1,468,089 - Echvi_1279 0.42 +0.1
1,468,089 - Echvi_1279 0.42 +1.1
1,468,089 - Echvi_1279 0.42 +0.2
1,468,089 - Echvi_1279 0.42 +1.4
1,468,089 - Echvi_1279 0.42 -0.9
1,468,111 + Echvi_1279 0.43 -0.8
1,468,330 + Echvi_1279 0.58 +0.3
1,468,413 + Echvi_1279 0.64 -0.4
1,468,442 + Echvi_1279 0.65 +0.8
1,468,451 - Echvi_1279 0.66 +1.6
1,468,467 + Echvi_1279 0.67 +0.9
1,468,517 + Echvi_1279 0.70 +0.1
1,468,534 + Echvi_1279 0.72 -0.4
1,468,571 - Echvi_1279 0.74 -0.6
1,468,726 + Echvi_1279 0.84 -2.0
1,468,726 + Echvi_1279 0.84 +0.6
1,468,775 + Echvi_1279 0.88 +0.8
1,468,910 - -0.9
1,468,918 + -0.9
1,468,918 + -2.4
1,468,919 - -1.3
1,469,021 + +0.6
1,469,021 + +0.0
1,469,022 - -1.1
1,469,028 - -0.8
1,469,028 - +0.0
1,469,038 + +0.3
1,469,038 + -1.6
1,469,263 + Echvi_1280 0.23 +0.6
1,469,428 + Echvi_1280 0.40 -2.5
1,469,428 + Echvi_1280 0.40 -2.8
1,469,642 + Echvi_1280 0.62 -0.8
1,469,688 + Echvi_1280 0.67 +0.4
1,469,715 + Echvi_1280 0.70 +0.5
1,469,942 + -0.1
1,469,942 + -1.4
1,469,942 + -0.5
1,469,942 + +0.9
1,469,942 + -0.3
1,469,942 + -0.7
1,469,942 + +0.9
1,470,017 + Echvi_1281 0.16 -0.1
1,470,017 + Echvi_1281 0.16 +1.5
1,470,018 - Echvi_1281 0.16 +2.7
1,470,037 + Echvi_1281 0.26 -0.5
1,470,037 + Echvi_1281 0.26 -1.3
1,470,044 + Echvi_1281 0.29 +0.3
1,470,052 + Echvi_1281 0.33 +1.0
1,470,052 + Echvi_1281 0.33 -0.1
1,470,085 + Echvi_1281 0.50 -0.1
1,470,085 + Echvi_1281 0.50 -0.6
1,470,085 + Echvi_1281 0.50 -1.7
1,470,106 + Echvi_1281 0.61 -1.0
1,470,108 + Echvi_1281 0.62 -0.0
1,470,108 + Echvi_1281 0.62 +1.4
1,470,108 + Echvi_1281 0.62 -1.6
1,470,108 + Echvi_1281 0.62 -0.1
1,470,122 - Echvi_1281 0.69 +1.7
1,470,141 + Echvi_1281 0.78 +0.9
1,470,345 + -1.0
1,470,345 + +0.5
1,470,389 + Echvi_1282 0.13 +0.4
1,470,443 + Echvi_1282 0.16 -1.0
1,470,549 + Echvi_1282 0.23 -0.5
1,470,597 + Echvi_1282 0.26 -0.2
1,470,597 + Echvi_1282 0.26 -0.1
1,470,597 + Echvi_1282 0.26 -0.7
1,470,597 + Echvi_1282 0.26 +0.6
1,470,598 - Echvi_1282 0.27 -0.5
1,470,620 + Echvi_1282 0.28 -1.3
1,470,620 + Echvi_1282 0.28 +0.6
1,470,620 + Echvi_1282 0.28 +0.2
1,470,620 + Echvi_1282 0.28 +0.2
1,470,621 - Echvi_1282 0.28 -0.5
1,470,624 + Echvi_1282 0.28 -0.6
1,470,624 + Echvi_1282 0.28 +0.2
1,470,818 + Echvi_1282 0.41 -1.4
1,470,819 - Echvi_1282 0.41 -0.6

Or see this region's nucleotide sequence