Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1250

Experiment: m.b. Cobalt chloride 0.8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1248 and Echvi_1249 are separated by 158 nucleotidesEchvi_1249 and Echvi_1250 are separated by 21 nucleotidesEchvi_1250 and Echvi_1251 are separated by 182 nucleotides Echvi_1248: Echvi_1248 - A/G-specific adenine glycosylase, at 1,434,868 to 1,435,941 _1248 Echvi_1249: Echvi_1249 - Bacterial nucleoid DNA-binding protein, at 1,436,100 to 1,436,408 _1249 Echvi_1250: Echvi_1250 - hypothetical protein, at 1,436,430 to 1,437,248 _1250 Echvi_1251: Echvi_1251 - ribonuclease, Rne/Rng family, at 1,437,431 to 1,439,002 _1251 Position (kb) 1436 1437 1438Strain fitness (log2 ratio) -2 -1 0 1at 1435.470 kb on + strand, within Echvi_1248at 1435.509 kb on + strand, within Echvi_1248at 1435.585 kb on - strand, within Echvi_1248at 1435.585 kb on - strand, within Echvi_1248at 1435.586 kb on + strand, within Echvi_1248at 1435.586 kb on + strand, within Echvi_1248at 1435.586 kb on + strand, within Echvi_1248at 1435.602 kb on + strand, within Echvi_1248at 1435.603 kb on - strand, within Echvi_1248at 1435.622 kb on + strand, within Echvi_1248at 1435.623 kb on - strand, within Echvi_1248at 1435.697 kb on + strand, within Echvi_1248at 1435.698 kb on - strand, within Echvi_1248at 1435.700 kb on + strand, within Echvi_1248at 1435.700 kb on + strand, within Echvi_1248at 1435.701 kb on - strand, within Echvi_1248at 1435.701 kb on - strand, within Echvi_1248at 1435.701 kb on - strand, within Echvi_1248at 1435.759 kb on + strand, within Echvi_1248at 1435.759 kb on + strand, within Echvi_1248at 1435.759 kb on + strand, within Echvi_1248at 1435.760 kb on - strand, within Echvi_1248at 1435.760 kb on - strand, within Echvi_1248at 1435.760 kb on - strand, within Echvi_1248at 1435.760 kb on - strand, within Echvi_1248at 1435.770 kb on - strand, within Echvi_1248at 1435.853 kb on + strandat 1435.902 kb on - strandat 1436.085 kb on + strandat 1436.384 kb on + strandat 1436.487 kb on + strandat 1436.715 kb on + strand, within Echvi_1250at 1436.789 kb on + strand, within Echvi_1250at 1436.931 kb on + strand, within Echvi_1250at 1436.932 kb on - strand, within Echvi_1250at 1437.015 kb on + strand, within Echvi_1250at 1437.020 kb on + strand, within Echvi_1250at 1437.093 kb on + strand, within Echvi_1250at 1437.227 kb on + strandat 1437.365 kb on + strandat 1437.365 kb on + strandat 1437.365 kb on + strandat 1437.368 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.8 mM
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1,435,470 + Echvi_1248 0.56 -0.9
1,435,509 + Echvi_1248 0.60 -0.5
1,435,585 - Echvi_1248 0.67 -1.3
1,435,585 - Echvi_1248 0.67 -1.5
1,435,586 + Echvi_1248 0.67 -1.4
1,435,586 + Echvi_1248 0.67 -0.0
1,435,586 + Echvi_1248 0.67 -2.2
1,435,602 + Echvi_1248 0.68 -0.1
1,435,603 - Echvi_1248 0.68 -0.6
1,435,622 + Echvi_1248 0.70 -1.3
1,435,623 - Echvi_1248 0.70 +0.4
1,435,697 + Echvi_1248 0.77 +0.4
1,435,698 - Echvi_1248 0.77 -0.4
1,435,700 + Echvi_1248 0.77 -2.2
1,435,700 + Echvi_1248 0.77 -0.2
1,435,701 - Echvi_1248 0.78 -0.0
1,435,701 - Echvi_1248 0.78 -0.4
1,435,701 - Echvi_1248 0.78 -1.0
1,435,759 + Echvi_1248 0.83 -0.3
1,435,759 + Echvi_1248 0.83 -0.0
1,435,759 + Echvi_1248 0.83 -0.1
1,435,760 - Echvi_1248 0.83 -0.6
1,435,760 - Echvi_1248 0.83 -0.1
1,435,760 - Echvi_1248 0.83 +0.2
1,435,760 - Echvi_1248 0.83 +0.2
1,435,770 - Echvi_1248 0.84 -0.5
1,435,853 + +0.9
1,435,902 - +0.9
1,436,085 + -0.3
1,436,384 + -0.8
1,436,487 + -0.5
1,436,715 + Echvi_1250 0.35 -0.3
1,436,789 + Echvi_1250 0.44 -1.9
1,436,931 + Echvi_1250 0.61 -2.3
1,436,932 - Echvi_1250 0.61 -0.3
1,437,015 + Echvi_1250 0.71 +0.0
1,437,020 + Echvi_1250 0.72 -1.3
1,437,093 + Echvi_1250 0.81 -1.9
1,437,227 + +0.2
1,437,365 + +0.5
1,437,365 + +1.2
1,437,365 + -0.7
1,437,368 + -0.7

Or see this region's nucleotide sequence