Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0981

Experiment: m.b. Cobalt chloride 0.8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0979 and Echvi_0980 are separated by 72 nucleotidesEchvi_0980 and Echvi_0981 overlap by 4 nucleotidesEchvi_0981 and Echvi_0982 are separated by 53 nucleotides Echvi_0979: Echvi_0979 - siroheme synthase, N-terminal domain, at 1,136,652 to 1,137,224 _0979 Echvi_0980: Echvi_0980 - uroporphyrin-III C-methyltransferase, at 1,137,297 to 1,138,061 _0980 Echvi_0981: Echvi_0981 - Sulfite reductase, beta subunit (hemoprotein), at 1,138,058 to 1,140,160 _0981 Echvi_0982: Echvi_0982 - sulfate adenylyltransferase, large subunit, at 1,140,214 to 1,141,473 _0982 Position (kb) 1138 1139 1140 1141Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1137.169 kb on - strandat 1137.239 kb on - strandat 1137.239 kb on - strandat 1137.239 kb on - strandat 1137.281 kb on - strandat 1137.281 kb on - strandat 1137.288 kb on + strandat 1137.288 kb on + strandat 1137.289 kb on - strandat 1137.298 kb on + strandat 1137.298 kb on + strandat 1137.299 kb on - strandat 1137.331 kb on - strandat 1137.399 kb on + strand, within Echvi_0980at 1137.399 kb on + strand, within Echvi_0980at 1137.399 kb on + strand, within Echvi_0980at 1137.399 kb on + strand, within Echvi_0980at 1137.399 kb on + strand, within Echvi_0980at 1137.400 kb on - strand, within Echvi_0980at 1137.404 kb on + strand, within Echvi_0980at 1137.404 kb on + strand, within Echvi_0980at 1137.411 kb on + strand, within Echvi_0980at 1137.412 kb on - strand, within Echvi_0980at 1137.412 kb on - strand, within Echvi_0980at 1137.412 kb on - strand, within Echvi_0980at 1137.420 kb on + strand, within Echvi_0980at 1137.420 kb on + strand, within Echvi_0980at 1137.421 kb on - strand, within Echvi_0980at 1137.421 kb on - strand, within Echvi_0980at 1137.421 kb on - strand, within Echvi_0980at 1137.421 kb on - strand, within Echvi_0980at 1137.421 kb on - strand, within Echvi_0980at 1137.421 kb on - strand, within Echvi_0980at 1137.421 kb on - strand, within Echvi_0980at 1137.421 kb on - strand, within Echvi_0980at 1137.421 kb on - strand, within Echvi_0980at 1137.421 kb on - strand, within Echvi_0980at 1137.421 kb on - strand, within Echvi_0980at 1137.422 kb on + strand, within Echvi_0980at 1137.422 kb on + strand, within Echvi_0980at 1137.581 kb on + strand, within Echvi_0980at 1137.581 kb on + strand, within Echvi_0980at 1137.581 kb on + strand, within Echvi_0980at 1137.581 kb on + strand, within Echvi_0980at 1137.673 kb on + strand, within Echvi_0980at 1137.711 kb on + strand, within Echvi_0980at 1137.712 kb on - strand, within Echvi_0980at 1137.712 kb on - strand, within Echvi_0980at 1137.824 kb on - strand, within Echvi_0980at 1137.824 kb on - strand, within Echvi_0980at 1137.845 kb on + strand, within Echvi_0980at 1137.892 kb on - strand, within Echvi_0980at 1137.892 kb on - strand, within Echvi_0980at 1137.932 kb on + strand, within Echvi_0980at 1137.950 kb on - strand, within Echvi_0980at 1137.954 kb on + strand, within Echvi_0980at 1137.954 kb on + strand, within Echvi_0980at 1137.954 kb on + strand, within Echvi_0980at 1137.955 kb on - strand, within Echvi_0980at 1137.990 kb on + strandat 1137.991 kb on - strandat 1138.029 kb on + strandat 1138.057 kb on - strandat 1138.057 kb on - strandat 1138.067 kb on + strandat 1138.068 kb on - strandat 1138.068 kb on - strandat 1138.125 kb on + strandat 1138.125 kb on + strandat 1138.966 kb on + strand, within Echvi_0981at 1138.966 kb on + strand, within Echvi_0981at 1139.158 kb on + strand, within Echvi_0981at 1139.788 kb on + strand, within Echvi_0981at 1139.792 kb on - strand, within Echvi_0981at 1140.065 kb on + strandat 1140.065 kb on + strandat 1140.137 kb on + strandat 1140.161 kb on - strandat 1140.177 kb on - strandat 1140.216 kb on - strandat 1140.216 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.8 mM
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1,137,169 - -0.2
1,137,239 - +0.6
1,137,239 - +1.7
1,137,239 - +1.1
1,137,281 - +0.4
1,137,281 - +1.9
1,137,288 + -1.4
1,137,288 + -0.4
1,137,289 - +1.9
1,137,298 + -2.3
1,137,298 + -2.5
1,137,299 - +1.4
1,137,331 - +1.9
1,137,399 + Echvi_0980 0.13 -0.7
1,137,399 + Echvi_0980 0.13 +0.9
1,137,399 + Echvi_0980 0.13 +0.4
1,137,399 + Echvi_0980 0.13 -1.7
1,137,399 + Echvi_0980 0.13 -0.1
1,137,400 - Echvi_0980 0.13 +0.6
1,137,404 + Echvi_0980 0.14 -0.1
1,137,404 + Echvi_0980 0.14 -1.1
1,137,411 + Echvi_0980 0.15 -1.5
1,137,412 - Echvi_0980 0.15 +1.3
1,137,412 - Echvi_0980 0.15 +0.2
1,137,412 - Echvi_0980 0.15 -0.3
1,137,420 + Echvi_0980 0.16 -1.9
1,137,420 + Echvi_0980 0.16 -0.9
1,137,421 - Echvi_0980 0.16 +1.3
1,137,421 - Echvi_0980 0.16 -0.0
1,137,421 - Echvi_0980 0.16 +0.9
1,137,421 - Echvi_0980 0.16 +0.8
1,137,421 - Echvi_0980 0.16 +0.8
1,137,421 - Echvi_0980 0.16 +0.2
1,137,421 - Echvi_0980 0.16 -0.5
1,137,421 - Echvi_0980 0.16 +0.1
1,137,421 - Echvi_0980 0.16 -0.3
1,137,421 - Echvi_0980 0.16 +0.2
1,137,421 - Echvi_0980 0.16 +0.3
1,137,422 + Echvi_0980 0.16 -2.8
1,137,422 + Echvi_0980 0.16 +0.0
1,137,581 + Echvi_0980 0.37 +0.9
1,137,581 + Echvi_0980 0.37 -2.0
1,137,581 + Echvi_0980 0.37 +0.1
1,137,581 + Echvi_0980 0.37 -1.4
1,137,673 + Echvi_0980 0.49 -1.6
1,137,711 + Echvi_0980 0.54 -1.7
1,137,712 - Echvi_0980 0.54 +1.0
1,137,712 - Echvi_0980 0.54 +0.1
1,137,824 - Echvi_0980 0.69 -0.0
1,137,824 - Echvi_0980 0.69 -0.3
1,137,845 + Echvi_0980 0.72 -0.7
1,137,892 - Echvi_0980 0.78 +0.5
1,137,892 - Echvi_0980 0.78 +0.4
1,137,932 + Echvi_0980 0.83 -1.2
1,137,950 - Echvi_0980 0.85 -1.1
1,137,954 + Echvi_0980 0.86 -0.7
1,137,954 + Echvi_0980 0.86 +1.3
1,137,954 + Echvi_0980 0.86 -1.0
1,137,955 - Echvi_0980 0.86 -0.3
1,137,990 + -0.9
1,137,991 - -0.5
1,138,029 + +0.2
1,138,057 - +0.2
1,138,057 - +1.1
1,138,067 + -0.6
1,138,068 - +0.5
1,138,068 - -0.5
1,138,125 + +0.7
1,138,125 + -0.3
1,138,966 + Echvi_0981 0.43 +0.7
1,138,966 + Echvi_0981 0.43 -1.3
1,139,158 + Echvi_0981 0.52 +0.1
1,139,788 + Echvi_0981 0.82 -0.7
1,139,792 - Echvi_0981 0.82 +1.1
1,140,065 + +1.7
1,140,065 + +2.7
1,140,137 + +0.3
1,140,161 - -1.5
1,140,177 - +1.1
1,140,216 - +0.2
1,140,216 - +0.4

Or see this region's nucleotide sequence