Experiment: m.b. Cobalt chloride 0.8 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0742 and Echvi_0743 are separated by 57 nucleotides Echvi_0743 and Echvi_0744 are separated by 226 nucleotides Echvi_0744 and Echvi_0745 are separated by 360 nucleotides
Echvi_0742: Echvi_0742 - hypothetical protein, at 831,018 to 831,356
_0742
Echvi_0743: Echvi_0743 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 831,414 to 831,995
_0743
Echvi_0744: Echvi_0744 - glycine dehydrogenase (decarboxylating), at 832,222 to 835,122
_0744
Echvi_0745: Echvi_0745 - Predicted aminopeptidases, at 835,483 to 836,979
_0745
Position (kb) 832
833
834
835
836 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 831.226 kb on + strand, within Echvi_0742 at 831.227 kb on - strand, within Echvi_0742 at 831.228 kb on + strand, within Echvi_0742 at 831.229 kb on - strand, within Echvi_0742 at 831.229 kb on - strand, within Echvi_0742 at 831.248 kb on - strand, within Echvi_0742 at 831.248 kb on - strand, within Echvi_0742 at 831.268 kb on + strand, within Echvi_0742 at 831.273 kb on + strand, within Echvi_0742 at 831.339 kb on + strand at 831.340 kb on - strand at 831.408 kb on + strand at 831.409 kb on - strand at 831.410 kb on + strand at 831.410 kb on + strand at 831.411 kb on - strand at 831.411 kb on - strand at 831.472 kb on + strand at 831.473 kb on - strand, within Echvi_0743 at 831.519 kb on + strand, within Echvi_0743 at 831.520 kb on - strand, within Echvi_0743 at 831.535 kb on + strand, within Echvi_0743 at 831.536 kb on - strand, within Echvi_0743 at 831.569 kb on + strand, within Echvi_0743 at 831.640 kb on + strand, within Echvi_0743 at 831.665 kb on + strand, within Echvi_0743 at 831.666 kb on - strand, within Echvi_0743 at 831.712 kb on + strand, within Echvi_0743 at 831.712 kb on + strand, within Echvi_0743 at 831.713 kb on - strand, within Echvi_0743 at 831.713 kb on - strand, within Echvi_0743 at 831.744 kb on + strand, within Echvi_0743 at 831.745 kb on - strand, within Echvi_0743 at 831.811 kb on + strand, within Echvi_0743 at 831.812 kb on - strand, within Echvi_0743 at 831.812 kb on - strand, within Echvi_0743 at 831.814 kb on + strand, within Echvi_0743 at 831.834 kb on + strand, within Echvi_0743 at 831.879 kb on + strand, within Echvi_0743 at 831.880 kb on - strand, within Echvi_0743 at 831.912 kb on - strand, within Echvi_0743 at 831.955 kb on + strand at 831.956 kb on - strand at 831.956 kb on - strand at 832.004 kb on + strand at 832.043 kb on - strand at 832.058 kb on + strand at 832.058 kb on + strand at 832.058 kb on + strand at 832.058 kb on + strand at 832.058 kb on + strand at 832.058 kb on + strand at 832.059 kb on - strand at 832.059 kb on - strand at 832.059 kb on - strand at 832.060 kb on + strand at 832.061 kb on - strand at 832.061 kb on - strand at 832.092 kb on - strand at 832.168 kb on + strand at 832.220 kb on + strand at 832.221 kb on - strand at 832.223 kb on + strand at 832.223 kb on + strand at 832.223 kb on + strand at 832.224 kb on - strand at 832.247 kb on + strand at 832.293 kb on - strand at 832.343 kb on + strand at 832.709 kb on + strand, within Echvi_0744 at 832.758 kb on + strand, within Echvi_0744 at 832.758 kb on + strand, within Echvi_0744 at 833.051 kb on - strand, within Echvi_0744 at 833.064 kb on + strand, within Echvi_0744 at 833.064 kb on + strand, within Echvi_0744 at 833.081 kb on + strand, within Echvi_0744 at 833.081 kb on + strand, within Echvi_0744 at 833.081 kb on + strand, within Echvi_0744 at 833.081 kb on + strand, within Echvi_0744 at 833.082 kb on - strand, within Echvi_0744 at 833.152 kb on - strand, within Echvi_0744 at 833.230 kb on - strand, within Echvi_0744 at 833.480 kb on + strand, within Echvi_0744 at 833.480 kb on + strand, within Echvi_0744 at 833.481 kb on - strand, within Echvi_0744 at 833.481 kb on - strand, within Echvi_0744 at 833.481 kb on - strand, within Echvi_0744 at 833.767 kb on + strand, within Echvi_0744 at 833.858 kb on + strand, within Echvi_0744 at 833.858 kb on + strand, within Echvi_0744 at 833.864 kb on + strand, within Echvi_0744 at 833.963 kb on + strand, within Echvi_0744 at 834.018 kb on + strand, within Echvi_0744 at 834.072 kb on - strand, within Echvi_0744 at 834.081 kb on - strand, within Echvi_0744 at 834.106 kb on + strand, within Echvi_0744 at 834.106 kb on + strand, within Echvi_0744 at 834.107 kb on - strand, within Echvi_0744 at 834.201 kb on + strand, within Echvi_0744 at 834.245 kb on + strand, within Echvi_0744 at 834.246 kb on - strand, within Echvi_0744 at 834.246 kb on - strand, within Echvi_0744 at 834.405 kb on + strand, within Echvi_0744 at 834.405 kb on + strand, within Echvi_0744 at 834.405 kb on + strand, within Echvi_0744 at 834.435 kb on + strand, within Echvi_0744 at 834.435 kb on + strand, within Echvi_0744 at 834.436 kb on - strand, within Echvi_0744 at 834.679 kb on - strand, within Echvi_0744 at 834.789 kb on - strand, within Echvi_0744 at 834.795 kb on + strand, within Echvi_0744 at 834.807 kb on - strand, within Echvi_0744 at 834.807 kb on - strand, within Echvi_0744 at 834.840 kb on + strand at 834.840 kb on + strand at 834.841 kb on - strand at 834.863 kb on + strand at 834.880 kb on - strand at 834.880 kb on - strand at 835.139 kb on - strand at 835.142 kb on - strand at 835.143 kb on + strand at 835.143 kb on + strand at 835.144 kb on - strand at 835.144 kb on - strand at 835.154 kb on + strand at 835.155 kb on - strand at 835.155 kb on - strand at 835.293 kb on - strand at 835.294 kb on + strand at 835.295 kb on - strand at 835.295 kb on - strand at 835.378 kb on + strand at 835.429 kb on - strand at 835.439 kb on - strand at 835.439 kb on - strand at 835.442 kb on + strand at 835.443 kb on - strand at 835.443 kb on - strand at 835.448 kb on + strand at 835.448 kb on + strand at 835.465 kb on + strand at 835.466 kb on - strand at 835.476 kb on + strand at 835.476 kb on + strand at 835.476 kb on + strand at 835.477 kb on - strand at 835.478 kb on + strand at 835.495 kb on + strand at 835.496 kb on - strand at 835.521 kb on - strand at 835.607 kb on - strand at 835.607 kb on - strand at 835.616 kb on - strand at 835.725 kb on - strand, within Echvi_0745 at 835.735 kb on + strand, within Echvi_0745 at 835.735 kb on + strand, within Echvi_0745 at 835.736 kb on - strand, within Echvi_0745 at 835.855 kb on + strand, within Echvi_0745 at 836.057 kb on - strand, within Echvi_0745
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.8 mM remove 831,226 + Echvi_0742 0.61 -0.3 831,227 - Echvi_0742 0.62 +0.4 831,228 + Echvi_0742 0.62 -0.5 831,229 - Echvi_0742 0.62 +3.0 831,229 - Echvi_0742 0.62 -0.4 831,248 - Echvi_0742 0.68 +0.5 831,248 - Echvi_0742 0.68 +0.1 831,268 + Echvi_0742 0.74 +0.6 831,273 + Echvi_0742 0.75 +0.1 831,339 + -0.4 831,340 - +0.5 831,408 + -0.2 831,409 - +1.0 831,410 + -0.5 831,410 + -1.6 831,411 - +0.5 831,411 - -1.2 831,472 + -0.4 831,473 - Echvi_0743 0.10 -0.6 831,519 + Echvi_0743 0.18 +0.6 831,520 - Echvi_0743 0.18 -1.3 831,535 + Echvi_0743 0.21 +0.5 831,536 - Echvi_0743 0.21 -0.6 831,569 + Echvi_0743 0.27 +0.2 831,640 + Echvi_0743 0.39 +0.4 831,665 + Echvi_0743 0.43 -0.1 831,666 - Echvi_0743 0.43 -0.1 831,712 + Echvi_0743 0.51 -0.4 831,712 + Echvi_0743 0.51 -0.1 831,713 - Echvi_0743 0.51 -0.2 831,713 - Echvi_0743 0.51 -0.0 831,744 + Echvi_0743 0.57 -0.3 831,745 - Echvi_0743 0.57 +0.7 831,811 + Echvi_0743 0.68 -0.9 831,812 - Echvi_0743 0.68 +0.0 831,812 - Echvi_0743 0.68 -0.4 831,814 + Echvi_0743 0.69 -0.7 831,834 + Echvi_0743 0.72 -0.9 831,879 + Echvi_0743 0.80 +0.2 831,880 - Echvi_0743 0.80 +0.6 831,912 - Echvi_0743 0.86 +1.3 831,955 + +1.3 831,956 - -0.5 831,956 - -0.7 832,004 + +0.3 832,043 - +0.0 832,058 + +0.1 832,058 + -0.6 832,058 + -0.7 832,058 + -0.8 832,058 + -1.7 832,058 + -1.2 832,059 - +0.1 832,059 - +0.8 832,059 - -0.2 832,060 + +0.8 832,061 - +1.5 832,061 - +0.1 832,092 - +0.9 832,168 + +0.2 832,220 + +0.7 832,221 - +0.6 832,223 + +0.4 832,223 + +0.4 832,223 + -1.3 832,224 - -0.8 832,247 + +1.4 832,293 - +0.1 832,343 + -0.1 832,709 + Echvi_0744 0.17 -1.1 832,758 + Echvi_0744 0.18 -1.2 832,758 + Echvi_0744 0.18 +0.8 833,051 - Echvi_0744 0.29 -1.8 833,064 + Echvi_0744 0.29 -2.1 833,064 + Echvi_0744 0.29 +0.1 833,081 + Echvi_0744 0.30 +0.1 833,081 + Echvi_0744 0.30 -0.6 833,081 + Echvi_0744 0.30 +0.4 833,081 + Echvi_0744 0.30 -1.3 833,082 - Echvi_0744 0.30 +1.5 833,152 - Echvi_0744 0.32 -0.2 833,230 - Echvi_0744 0.35 -1.2 833,480 + Echvi_0744 0.43 -1.0 833,480 + Echvi_0744 0.43 +0.4 833,481 - Echvi_0744 0.43 -1.0 833,481 - Echvi_0744 0.43 -2.8 833,481 - Echvi_0744 0.43 +0.2 833,767 + Echvi_0744 0.53 -0.3 833,858 + Echvi_0744 0.56 +1.1 833,858 + Echvi_0744 0.56 +0.8 833,864 + Echvi_0744 0.57 -1.5 833,963 + Echvi_0744 0.60 +0.6 834,018 + Echvi_0744 0.62 +0.6 834,072 - Echvi_0744 0.64 -0.9 834,081 - Echvi_0744 0.64 -0.2 834,106 + Echvi_0744 0.65 -1.0 834,106 + Echvi_0744 0.65 +1.7 834,107 - Echvi_0744 0.65 -1.1 834,201 + Echvi_0744 0.68 +0.7 834,245 + Echvi_0744 0.70 +2.2 834,246 - Echvi_0744 0.70 -0.6 834,246 - Echvi_0744 0.70 +0.4 834,405 + Echvi_0744 0.75 +0.7 834,405 + Echvi_0744 0.75 +2.0 834,405 + Echvi_0744 0.75 -1.6 834,435 + Echvi_0744 0.76 -0.1 834,435 + Echvi_0744 0.76 -1.1 834,436 - Echvi_0744 0.76 +0.2 834,679 - Echvi_0744 0.85 +0.2 834,789 - Echvi_0744 0.88 +0.6 834,795 + Echvi_0744 0.89 +0.2 834,807 - Echvi_0744 0.89 -0.1 834,807 - Echvi_0744 0.89 -1.8 834,840 + +0.4 834,840 + -0.7 834,841 - +1.2 834,863 + -0.5 834,880 - +1.9 834,880 - -0.3 835,139 - -1.0 835,142 - -0.9 835,143 + -0.0 835,143 + -2.0 835,144 - +0.8 835,144 - +0.5 835,154 + -1.1 835,155 - +0.2 835,155 - +0.6 835,293 - -0.4 835,294 + -1.0 835,295 - -1.0 835,295 - +1.7 835,378 + -0.1 835,429 - +0.8 835,439 - -0.1 835,439 - +0.8 835,442 + -0.9 835,443 - -1.1 835,443 - +0.0 835,448 + -0.0 835,448 + +0.5 835,465 + +0.6 835,466 - +0.5 835,476 + +0.7 835,476 + -1.3 835,476 + +0.2 835,477 - +0.2 835,478 + -1.8 835,495 + -0.1 835,496 - -0.7 835,521 - +0.6 835,607 - +0.6 835,607 - +0.1 835,616 - +0.3 835,725 - Echvi_0745 0.16 +1.9 835,735 + Echvi_0745 0.17 +0.4 835,735 + Echvi_0745 0.17 +0.1 835,736 - Echvi_0745 0.17 -0.6 835,855 + Echvi_0745 0.25 +0.0 836,057 - Echvi_0745 0.38 +1.1
Or see this region's nucleotide sequence