Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0712

Experiment: m.b. Cobalt chloride 0.8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0709 and Echvi_0710 are separated by 194 nucleotidesEchvi_0710 and Echvi_0711 are separated by 9 nucleotidesEchvi_0711 and Echvi_0712 are separated by 22 nucleotidesEchvi_0712 and Echvi_0713 are separated by 2 nucleotides Echvi_0709: Echvi_0709 - translation initiation factor IF-2, at 799,849 to 802,848 _0709 Echvi_0710: Echvi_0710 - hypothetical protein, at 803,043 to 803,372 _0710 Echvi_0711: Echvi_0711 - hypothetical protein, at 803,382 to 803,615 _0711 Echvi_0712: Echvi_0712 - hypothetical protein, at 803,638 to 804,831 _0712 Echvi_0713: Echvi_0713 - aspartate-semialdehyde dehydrogenase (peptidoglycan organisms), at 804,834 to 805,823 _0713 Position (kb) 803 804 805Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 802.886 kb on - strandat 802.891 kb on - strandat 802.975 kb on + strandat 803.125 kb on + strand, within Echvi_0710at 803.125 kb on + strand, within Echvi_0710at 803.126 kb on - strand, within Echvi_0710at 803.126 kb on - strand, within Echvi_0710at 803.126 kb on - strand, within Echvi_0710at 803.127 kb on + strand, within Echvi_0710at 803.127 kb on + strand, within Echvi_0710at 803.127 kb on + strand, within Echvi_0710at 803.143 kb on + strand, within Echvi_0710at 803.152 kb on + strand, within Echvi_0710at 803.152 kb on + strand, within Echvi_0710at 803.152 kb on + strand, within Echvi_0710at 803.156 kb on + strand, within Echvi_0710at 803.168 kb on + strand, within Echvi_0710at 803.195 kb on - strand, within Echvi_0710at 803.343 kb on + strandat 803.350 kb on + strandat 803.351 kb on - strandat 803.363 kb on - strandat 803.363 kb on - strandat 803.370 kb on + strandat 803.410 kb on - strand, within Echvi_0711at 803.410 kb on - strand, within Echvi_0711at 803.418 kb on - strand, within Echvi_0711at 803.522 kb on - strand, within Echvi_0711at 803.522 kb on - strand, within Echvi_0711at 803.539 kb on + strand, within Echvi_0711at 803.621 kb on + strandat 803.628 kb on + strandat 803.657 kb on + strandat 803.657 kb on + strandat 803.671 kb on - strandat 803.685 kb on + strandat 803.694 kb on + strandat 803.700 kb on - strandat 803.895 kb on - strand, within Echvi_0712at 803.930 kb on + strand, within Echvi_0712at 803.950 kb on - strand, within Echvi_0712at 804.137 kb on - strand, within Echvi_0712at 804.201 kb on + strand, within Echvi_0712at 804.201 kb on + strand, within Echvi_0712at 804.202 kb on - strand, within Echvi_0712at 804.205 kb on - strand, within Echvi_0712at 804.235 kb on - strand, within Echvi_0712at 804.344 kb on + strand, within Echvi_0712at 804.345 kb on - strand, within Echvi_0712at 804.345 kb on - strand, within Echvi_0712at 804.345 kb on - strand, within Echvi_0712at 804.360 kb on + strand, within Echvi_0712at 804.361 kb on - strand, within Echvi_0712at 804.372 kb on + strand, within Echvi_0712at 804.372 kb on + strand, within Echvi_0712at 804.373 kb on - strand, within Echvi_0712at 804.373 kb on - strand, within Echvi_0712at 804.377 kb on - strand, within Echvi_0712at 804.385 kb on - strand, within Echvi_0712at 804.451 kb on - strand, within Echvi_0712at 804.451 kb on - strand, within Echvi_0712at 804.451 kb on - strand, within Echvi_0712at 804.451 kb on - strand, within Echvi_0712at 804.516 kb on - strand, within Echvi_0712at 804.518 kb on + strand, within Echvi_0712at 804.526 kb on + strand, within Echvi_0712at 804.526 kb on + strand, within Echvi_0712at 804.527 kb on - strand, within Echvi_0712at 804.672 kb on + strand, within Echvi_0712at 804.717 kb on + strandat 804.810 kb on + strandat 804.810 kb on + strandat 804.812 kb on + strandat 804.812 kb on + strandat 804.812 kb on + strandat 804.812 kb on + strandat 804.812 kb on + strandat 804.812 kb on + strandat 804.812 kb on + strandat 804.813 kb on - strandat 804.813 kb on - strandat 804.813 kb on - strandat 804.813 kb on - strandat 804.813 kb on - strandat 804.813 kb on - strandat 804.814 kb on + strandat 804.814 kb on + strandat 804.814 kb on + strandat 804.814 kb on + strandat 804.814 kb on + strandat 804.814 kb on + strandat 804.815 kb on - strandat 804.815 kb on - strandat 804.815 kb on - strandat 804.835 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.8 mM
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802,886 - +0.0
802,891 - +0.0
802,975 + +0.8
803,125 + Echvi_0710 0.25 +1.2
803,125 + Echvi_0710 0.25 -0.8
803,126 - Echvi_0710 0.25 -0.2
803,126 - Echvi_0710 0.25 -0.1
803,126 - Echvi_0710 0.25 -0.3
803,127 + Echvi_0710 0.25 -0.5
803,127 + Echvi_0710 0.25 -0.6
803,127 + Echvi_0710 0.25 +0.9
803,143 + Echvi_0710 0.30 +0.6
803,152 + Echvi_0710 0.33 +0.2
803,152 + Echvi_0710 0.33 -0.6
803,152 + Echvi_0710 0.33 -0.3
803,156 + Echvi_0710 0.34 -0.0
803,168 + Echvi_0710 0.38 -1.2
803,195 - Echvi_0710 0.46 -1.7
803,343 + +1.2
803,350 + +0.3
803,351 - -0.1
803,363 - -0.9
803,363 - -1.2
803,370 + -0.2
803,410 - Echvi_0711 0.12 -0.7
803,410 - Echvi_0711 0.12 +1.3
803,418 - Echvi_0711 0.15 -0.8
803,522 - Echvi_0711 0.60 +0.7
803,522 - Echvi_0711 0.60 +2.0
803,539 + Echvi_0711 0.67 +0.8
803,621 + +1.0
803,628 + -1.5
803,657 + -1.0
803,657 + -1.4
803,671 - +0.1
803,685 + -2.0
803,694 + -0.9
803,700 - +0.4
803,895 - Echvi_0712 0.22 -0.4
803,930 + Echvi_0712 0.24 +0.7
803,950 - Echvi_0712 0.26 -1.1
804,137 - Echvi_0712 0.42 +0.0
804,201 + Echvi_0712 0.47 -0.6
804,201 + Echvi_0712 0.47 -0.7
804,202 - Echvi_0712 0.47 -1.3
804,205 - Echvi_0712 0.47 +0.5
804,235 - Echvi_0712 0.50 +0.4
804,344 + Echvi_0712 0.59 +1.4
804,345 - Echvi_0712 0.59 -1.1
804,345 - Echvi_0712 0.59 +0.2
804,345 - Echvi_0712 0.59 -1.8
804,360 + Echvi_0712 0.60 -1.6
804,361 - Echvi_0712 0.61 -0.7
804,372 + Echvi_0712 0.61 -1.8
804,372 + Echvi_0712 0.61 +0.1
804,373 - Echvi_0712 0.62 -2.1
804,373 - Echvi_0712 0.62 -0.9
804,377 - Echvi_0712 0.62 -2.1
804,385 - Echvi_0712 0.63 -0.8
804,451 - Echvi_0712 0.68 -0.2
804,451 - Echvi_0712 0.68 -0.9
804,451 - Echvi_0712 0.68 -0.4
804,451 - Echvi_0712 0.68 -1.0
804,516 - Echvi_0712 0.74 -1.8
804,518 + Echvi_0712 0.74 -0.7
804,526 + Echvi_0712 0.74 -0.1
804,526 + Echvi_0712 0.74 -1.8
804,527 - Echvi_0712 0.74 -1.2
804,672 + Echvi_0712 0.87 -0.9
804,717 + -0.8
804,810 + +0.1
804,810 + -0.4
804,812 + -3.6
804,812 + -1.2
804,812 + -0.5
804,812 + -1.3
804,812 + -2.1
804,812 + -0.3
804,812 + -1.5
804,813 - -1.6
804,813 - +2.1
804,813 - -1.6
804,813 - +2.4
804,813 - +0.4
804,813 - -1.3
804,814 + -0.4
804,814 + +0.2
804,814 + +0.7
804,814 + -1.3
804,814 + +0.1
804,814 + -0.5
804,815 - -0.8
804,815 - -1.0
804,815 - -0.4
804,835 + -1.3

Or see this region's nucleotide sequence