Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0662

Experiment: m.b. Cobalt chloride 0.8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0660 and Echvi_0661 are separated by 64 nucleotidesEchvi_0661 and Echvi_0662 are separated by 102 nucleotidesEchvi_0662 and Echvi_0663 are separated by 143 nucleotidesEchvi_0663 and Echvi_0664 are separated by 104 nucleotides Echvi_0660: Echvi_0660 - Uncharacterized conserved protein, at 744,012 to 744,458 _0660 Echvi_0661: Echvi_0661 - pyridoxine 5'-phosphate synthase, at 744,523 to 745,248 _0661 Echvi_0662: Echvi_0662 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 745,351 to 746,112 _0662 Echvi_0663: Echvi_0663 - Predicted methyltransferases, at 746,256 to 746,969 _0663 Echvi_0664: Echvi_0664 - Methylase involved in ubiquinone/menaquinone biosynthesis, at 747,074 to 747,772 _0664 Position (kb) 745 746 747Strain fitness (log2 ratio) -2 -1 0 1at 744.359 kb on + strand, within Echvi_0660at 744.359 kb on + strand, within Echvi_0660at 744.360 kb on - strand, within Echvi_0660at 744.365 kb on + strand, within Echvi_0660at 744.439 kb on - strandat 744.511 kb on + strandat 744.511 kb on + strandat 744.511 kb on + strandat 744.512 kb on - strandat 745.247 kb on - strandat 745.254 kb on - strandat 745.306 kb on + strandat 745.359 kb on - strandat 745.366 kb on - strandat 745.462 kb on + strand, within Echvi_0662at 745.525 kb on + strand, within Echvi_0662at 745.557 kb on + strand, within Echvi_0662at 745.585 kb on + strand, within Echvi_0662at 745.585 kb on + strand, within Echvi_0662at 745.588 kb on - strand, within Echvi_0662at 745.634 kb on + strand, within Echvi_0662at 745.634 kb on + strand, within Echvi_0662at 745.635 kb on - strand, within Echvi_0662at 745.930 kb on + strand, within Echvi_0662at 745.930 kb on + strand, within Echvi_0662at 745.973 kb on - strand, within Echvi_0662at 745.973 kb on - strand, within Echvi_0662at 745.973 kb on - strand, within Echvi_0662at 745.974 kb on + strand, within Echvi_0662at 745.975 kb on - strand, within Echvi_0662at 746.020 kb on + strand, within Echvi_0662at 746.208 kb on - strandat 746.274 kb on + strandat 746.274 kb on + strandat 746.361 kb on + strand, within Echvi_0663at 746.362 kb on - strand, within Echvi_0663at 746.397 kb on - strand, within Echvi_0663at 746.454 kb on - strand, within Echvi_0663at 746.723 kb on + strand, within Echvi_0663at 746.723 kb on + strand, within Echvi_0663at 746.723 kb on + strand, within Echvi_0663at 746.991 kb on - strandat 747.003 kb on + strandat 747.003 kb on + strandat 747.004 kb on - strandat 747.007 kb on + strandat 747.007 kb on + strandat 747.008 kb on - strandat 747.008 kb on - strandat 747.051 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.8 mM
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744,359 + Echvi_0660 0.78 -0.6
744,359 + Echvi_0660 0.78 +0.3
744,360 - Echvi_0660 0.78 +1.0
744,365 + Echvi_0660 0.79 +0.2
744,439 - +1.1
744,511 + -0.2
744,511 + -0.8
744,511 + +1.7
744,512 - -1.5
745,247 - -1.0
745,254 - +0.1
745,306 + -0.1
745,359 - -1.6
745,366 - -2.3
745,462 + Echvi_0662 0.15 +0.2
745,525 + Echvi_0662 0.23 +0.7
745,557 + Echvi_0662 0.27 +0.1
745,585 + Echvi_0662 0.31 +0.4
745,585 + Echvi_0662 0.31 -0.3
745,588 - Echvi_0662 0.31 -2.1
745,634 + Echvi_0662 0.37 -0.8
745,634 + Echvi_0662 0.37 -2.4
745,635 - Echvi_0662 0.37 -0.1
745,930 + Echvi_0662 0.76 -1.4
745,930 + Echvi_0662 0.76 +0.1
745,973 - Echvi_0662 0.82 -1.3
745,973 - Echvi_0662 0.82 -1.6
745,973 - Echvi_0662 0.82 -0.8
745,974 + Echvi_0662 0.82 -0.6
745,975 - Echvi_0662 0.82 -0.5
746,020 + Echvi_0662 0.88 -1.3
746,208 - -1.2
746,274 + -0.8
746,274 + -1.0
746,361 + Echvi_0663 0.15 -0.1
746,362 - Echvi_0663 0.15 -0.4
746,397 - Echvi_0663 0.20 -0.8
746,454 - Echvi_0663 0.28 +0.4
746,723 + Echvi_0663 0.65 +0.8
746,723 + Echvi_0663 0.65 +0.5
746,723 + Echvi_0663 0.65 -1.6
746,991 - -0.1
747,003 + +1.2
747,003 + -0.7
747,004 - -0.3
747,007 + -0.1
747,007 + +0.3
747,008 - +1.5
747,008 - +0.1
747,051 + +1.4

Or see this region's nucleotide sequence