Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0642

Experiment: m.b. Cobalt chloride 0.8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0641 and Echvi_0642 are separated by 653 nucleotidesEchvi_0642 and Echvi_0643 are separated by 27 nucleotides Echvi_0641: Echvi_0641 - Transposase and inactivated derivatives, at 724,173 to 725,405 _0641 Echvi_0642: Echvi_0642 - pseudouridine synthase, RluA family, at 726,059 to 727,153 _0642 Echvi_0643: Echvi_0643 - 1-aminocyclopropane-1-carboxylate deaminase, at 727,181 to 728,110 _0643 Position (kb) 726 727 728Strain fitness (log2 ratio) -2 -1 0 1at 725.176 kb on - strand, within Echvi_0641at 725.658 kb on - strandat 725.658 kb on - strandat 725.667 kb on + strandat 725.667 kb on + strandat 725.668 kb on - strandat 725.682 kb on - strandat 725.688 kb on - strandat 725.698 kb on + strandat 725.699 kb on - strandat 725.708 kb on + strandat 725.773 kb on + strandat 725.773 kb on + strandat 725.773 kb on + strandat 725.774 kb on - strandat 725.774 kb on - strandat 725.776 kb on + strandat 725.777 kb on - strandat 725.808 kb on + strandat 725.992 kb on - strandat 725.999 kb on - strandat 726.078 kb on + strandat 726.208 kb on + strand, within Echvi_0642at 726.209 kb on - strand, within Echvi_0642at 726.235 kb on - strand, within Echvi_0642at 726.309 kb on + strand, within Echvi_0642at 726.375 kb on + strandat 726.376 kb on - strandat 726.376 kb on - strand, within Echvi_0642at 726.418 kb on + strand, within Echvi_0642at 726.440 kb on + strand, within Echvi_0642at 726.532 kb on + strand, within Echvi_0642at 726.534 kb on + strand, within Echvi_0642at 726.534 kb on + strand, within Echvi_0642at 726.534 kb on + strand, within Echvi_0642at 726.534 kb on + strand, within Echvi_0642at 726.534 kb on + strand, within Echvi_0642at 726.735 kb on + strand, within Echvi_0642at 726.827 kb on + strand, within Echvi_0642at 726.827 kb on + strand, within Echvi_0642at 726.827 kb on + strand, within Echvi_0642at 726.828 kb on - strand, within Echvi_0642at 726.854 kb on + strand, within Echvi_0642at 726.889 kb on + strand, within Echvi_0642at 726.923 kb on - strand, within Echvi_0642at 727.031 kb on + strand, within Echvi_0642at 727.032 kb on - strand, within Echvi_0642at 727.036 kb on + strand, within Echvi_0642at 727.036 kb on + strand, within Echvi_0642at 727.036 kb on + strand, within Echvi_0642at 727.047 kb on + strandat 727.146 kb on - strandat 727.185 kb on + strandat 727.185 kb on + strandat 727.317 kb on - strand, within Echvi_0643at 727.325 kb on - strand, within Echvi_0643at 727.328 kb on + strand, within Echvi_0643at 727.368 kb on + strand, within Echvi_0643at 727.399 kb on + strand, within Echvi_0643at 727.400 kb on - strand, within Echvi_0643at 727.400 kb on - strand, within Echvi_0643at 727.604 kb on + strand, within Echvi_0643at 727.649 kb on - strand, within Echvi_0643at 727.649 kb on - strand, within Echvi_0643at 727.649 kb on - strand, within Echvi_0643at 727.691 kb on - strand, within Echvi_0643at 727.691 kb on - strand, within Echvi_0643at 727.975 kb on - strand, within Echvi_0643at 727.975 kb on - strand, within Echvi_0643at 727.997 kb on - strand, within Echvi_0643at 727.999 kb on + strand, within Echvi_0643at 727.999 kb on + strand, within Echvi_0643at 728.064 kb on + strandat 728.064 kb on + strandat 728.065 kb on - strandat 728.065 kb on - strandat 728.065 kb on - strandat 728.113 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.8 mM
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725,176 - Echvi_0641 0.81 -1.8
725,658 - +0.4
725,658 - +0.3
725,667 + +0.1
725,667 + +0.2
725,668 - +0.2
725,682 - -0.1
725,688 - +0.4
725,698 + +1.1
725,699 - +1.3
725,708 + -0.3
725,773 + +0.5
725,773 + +0.5
725,773 + +0.8
725,774 - -0.6
725,774 - +0.6
725,776 + +0.6
725,777 - -0.1
725,808 + +0.1
725,992 - -1.4
725,999 - -0.7
726,078 + +0.5
726,208 + Echvi_0642 0.14 -0.5
726,209 - Echvi_0642 0.14 -1.7
726,235 - Echvi_0642 0.16 -0.6
726,309 + Echvi_0642 0.23 -1.8
726,375 + +1.4
726,376 - +0.7
726,376 - Echvi_0642 0.29 -1.4
726,418 + Echvi_0642 0.33 -1.2
726,440 + Echvi_0642 0.35 -1.6
726,532 + Echvi_0642 0.43 -1.1
726,534 + Echvi_0642 0.43 -1.0
726,534 + Echvi_0642 0.43 -1.4
726,534 + Echvi_0642 0.43 +0.5
726,534 + Echvi_0642 0.43 -0.7
726,534 + Echvi_0642 0.43 +0.8
726,735 + Echvi_0642 0.62 -1.3
726,827 + Echvi_0642 0.70 -1.5
726,827 + Echvi_0642 0.70 -0.7
726,827 + Echvi_0642 0.70 -1.0
726,828 - Echvi_0642 0.70 -1.0
726,854 + Echvi_0642 0.73 +0.7
726,889 + Echvi_0642 0.76 +0.7
726,923 - Echvi_0642 0.79 +1.1
727,031 + Echvi_0642 0.89 +0.4
727,032 - Echvi_0642 0.89 +0.8
727,036 + Echvi_0642 0.89 +0.2
727,036 + Echvi_0642 0.89 -1.6
727,036 + Echvi_0642 0.89 -1.4
727,047 + -0.8
727,146 - -0.1
727,185 + -1.0
727,185 + +0.3
727,317 - Echvi_0643 0.15 -0.4
727,325 - Echvi_0643 0.15 +0.5
727,328 + Echvi_0643 0.16 +0.3
727,368 + Echvi_0643 0.20 +0.3
727,399 + Echvi_0643 0.23 +1.2
727,400 - Echvi_0643 0.24 -1.0
727,400 - Echvi_0643 0.24 -0.1
727,604 + Echvi_0643 0.45 +1.7
727,649 - Echvi_0643 0.50 -0.3
727,649 - Echvi_0643 0.50 -1.4
727,649 - Echvi_0643 0.50 +1.2
727,691 - Echvi_0643 0.55 +0.6
727,691 - Echvi_0643 0.55 -0.7
727,975 - Echvi_0643 0.85 -0.7
727,975 - Echvi_0643 0.85 +0.6
727,997 - Echvi_0643 0.88 +1.5
727,999 + Echvi_0643 0.88 +0.6
727,999 + Echvi_0643 0.88 -1.3
728,064 + +0.8
728,064 + -1.2
728,065 - -0.2
728,065 - -2.1
728,065 - +0.5
728,113 + +1.2

Or see this region's nucleotide sequence