Experiment: m.b. Cobalt chloride 0.8 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0634 and Echvi_0635 are separated by 92 nucleotides Echvi_0635 and Echvi_0636 overlap by 11 nucleotides Echvi_0636 and Echvi_0637 are separated by 24 nucleotides Echvi_0637 and Echvi_0638 are separated by 82 nucleotides
Echvi_0634: Echvi_0634 - Parvulin-like peptidyl-prolyl isomerase, at 717,351 to 719,366
_0634
Echvi_0635: Echvi_0635 - Anti-sigma regulatory factor (Ser/Thr protein kinase), at 719,459 to 719,887
_0635
Echvi_0636: Echvi_0636 - anti-anti-sigma factor, at 719,877 to 720,221
_0636
Echvi_0637: Echvi_0637 - Serine phosphatase RsbU, regulator of sigma subunit, at 720,246 to 722,312
_0637
Echvi_0638: Echvi_0638 - hypothetical protein, at 722,395 to 723,111
_0638
Position (kb) 720
721
722
723 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 719.264 kb on - strand at 719.281 kb on - strand at 719.328 kb on + strand at 719.329 kb on - strand at 719.353 kb on + strand at 719.353 kb on + strand at 719.353 kb on + strand at 719.354 kb on - strand at 719.357 kb on + strand at 719.369 kb on + strand at 719.369 kb on + strand at 719.369 kb on + strand at 719.373 kb on + strand at 719.374 kb on - strand at 719.374 kb on - strand at 719.374 kb on - strand at 719.374 kb on - strand at 719.439 kb on + strand at 719.439 kb on + strand at 719.439 kb on + strand at 719.439 kb on + strand at 719.439 kb on + strand at 719.439 kb on + strand at 719.439 kb on + strand at 719.439 kb on + strand at 719.440 kb on - strand at 719.440 kb on - strand at 719.440 kb on - strand at 719.453 kb on + strand at 719.873 kb on + strand at 719.873 kb on + strand at 719.912 kb on + strand, within Echvi_0636 at 719.912 kb on + strand, within Echvi_0636 at 719.958 kb on + strand at 719.959 kb on - strand, within Echvi_0636 at 719.967 kb on + strand, within Echvi_0636 at 719.967 kb on + strand, within Echvi_0636 at 719.968 kb on - strand, within Echvi_0636 at 720.028 kb on + strand, within Echvi_0636 at 720.035 kb on + strand, within Echvi_0636 at 720.036 kb on - strand, within Echvi_0636 at 720.045 kb on + strand, within Echvi_0636 at 720.046 kb on - strand, within Echvi_0636 at 720.062 kb on + strand, within Echvi_0636 at 720.063 kb on - strand, within Echvi_0636 at 720.069 kb on + strand, within Echvi_0636 at 720.069 kb on + strand, within Echvi_0636 at 720.070 kb on - strand, within Echvi_0636 at 720.124 kb on - strand, within Echvi_0636 at 720.124 kb on - strand, within Echvi_0636 at 720.149 kb on + strand, within Echvi_0636 at 720.149 kb on + strand, within Echvi_0636 at 720.185 kb on + strand, within Echvi_0636 at 720.185 kb on + strand, within Echvi_0636 at 720.186 kb on - strand, within Echvi_0636 at 720.186 kb on - strand, within Echvi_0636 at 720.186 kb on - strand, within Echvi_0636 at 720.186 kb on - strand, within Echvi_0636 at 720.209 kb on + strand at 720.210 kb on - strand at 720.221 kb on + strand at 720.221 kb on + strand at 720.221 kb on + strand at 720.222 kb on - strand at 720.222 kb on - strand at 720.222 kb on - strand at 720.229 kb on + strand at 720.230 kb on - strand at 720.231 kb on + strand at 720.231 kb on + strand at 720.231 kb on + strand at 720.231 kb on + strand at 720.231 kb on + strand at 720.231 kb on + strand at 720.283 kb on + strand at 720.284 kb on - strand at 720.284 kb on - strand at 720.336 kb on + strand at 720.337 kb on - strand at 720.372 kb on - strand at 720.372 kb on - strand at 720.373 kb on + strand at 720.373 kb on + strand at 720.373 kb on + strand at 720.373 kb on + strand at 720.373 kb on + strand at 720.373 kb on + strand at 720.377 kb on + strand at 720.377 kb on + strand at 720.377 kb on + strand at 720.385 kb on - strand at 720.403 kb on + strand at 720.441 kb on - strand at 720.452 kb on + strand at 720.454 kb on + strand, within Echvi_0637 at 720.454 kb on + strand, within Echvi_0637 at 720.454 kb on + strand, within Echvi_0637 at 720.454 kb on + strand, within Echvi_0637 at 720.454 kb on + strand, within Echvi_0637 at 720.455 kb on - strand, within Echvi_0637 at 720.514 kb on + strand, within Echvi_0637 at 720.518 kb on + strand, within Echvi_0637 at 720.589 kb on + strand, within Echvi_0637 at 720.589 kb on + strand, within Echvi_0637 at 720.592 kb on + strand, within Echvi_0637 at 720.627 kb on - strand, within Echvi_0637 at 720.627 kb on - strand, within Echvi_0637 at 720.656 kb on - strand, within Echvi_0637 at 720.656 kb on - strand, within Echvi_0637 at 720.659 kb on - strand, within Echvi_0637 at 720.663 kb on - strand, within Echvi_0637 at 720.663 kb on - strand, within Echvi_0637 at 720.751 kb on - strand, within Echvi_0637 at 720.751 kb on - strand, within Echvi_0637 at 720.751 kb on - strand, within Echvi_0637 at 720.788 kb on + strand, within Echvi_0637 at 720.789 kb on - strand, within Echvi_0637 at 720.789 kb on - strand, within Echvi_0637 at 720.868 kb on + strand, within Echvi_0637 at 720.872 kb on - strand, within Echvi_0637 at 720.882 kb on + strand, within Echvi_0637 at 720.929 kb on + strand, within Echvi_0637 at 720.993 kb on - strand, within Echvi_0637 at 721.077 kb on - strand, within Echvi_0637 at 721.079 kb on + strand, within Echvi_0637 at 721.079 kb on + strand, within Echvi_0637 at 721.079 kb on + strand, within Echvi_0637 at 721.079 kb on + strand, within Echvi_0637 at 721.115 kb on + strand, within Echvi_0637 at 721.116 kb on - strand, within Echvi_0637 at 721.145 kb on + strand, within Echvi_0637 at 721.145 kb on + strand, within Echvi_0637 at 721.145 kb on + strand, within Echvi_0637 at 721.146 kb on - strand, within Echvi_0637 at 721.146 kb on - strand, within Echvi_0637 at 721.146 kb on - strand, within Echvi_0637 at 721.150 kb on - strand, within Echvi_0637 at 721.290 kb on - strand, within Echvi_0637 at 721.290 kb on - strand, within Echvi_0637 at 721.298 kb on + strand, within Echvi_0637 at 721.298 kb on + strand, within Echvi_0637 at 721.350 kb on + strand, within Echvi_0637 at 721.405 kb on - strand, within Echvi_0637 at 721.405 kb on - strand, within Echvi_0637 at 721.452 kb on + strand, within Echvi_0637 at 721.478 kb on + strand, within Echvi_0637 at 721.479 kb on - strand, within Echvi_0637 at 721.514 kb on + strand, within Echvi_0637 at 721.514 kb on + strand, within Echvi_0637 at 721.742 kb on + strand, within Echvi_0637 at 721.810 kb on + strand, within Echvi_0637 at 721.811 kb on - strand, within Echvi_0637 at 721.813 kb on - strand, within Echvi_0637 at 721.813 kb on - strand, within Echvi_0637 at 721.816 kb on + strand, within Echvi_0637 at 721.817 kb on - strand, within Echvi_0637 at 721.823 kb on + strand, within Echvi_0637 at 721.823 kb on + strand, within Echvi_0637 at 721.823 kb on + strand, within Echvi_0637 at 721.831 kb on - strand, within Echvi_0637 at 721.846 kb on + strand, within Echvi_0637 at 721.847 kb on - strand, within Echvi_0637 at 721.849 kb on - strand, within Echvi_0637 at 721.849 kb on - strand, within Echvi_0637 at 721.849 kb on - strand, within Echvi_0637 at 721.849 kb on - strand, within Echvi_0637 at 721.849 kb on - strand, within Echvi_0637 at 721.868 kb on + strand, within Echvi_0637 at 721.886 kb on - strand, within Echvi_0637 at 721.985 kb on + strand, within Echvi_0637 at 721.985 kb on + strand, within Echvi_0637 at 721.985 kb on + strand, within Echvi_0637 at 721.985 kb on + strand, within Echvi_0637 at 721.986 kb on - strand, within Echvi_0637 at 721.986 kb on - strand, within Echvi_0637 at 721.986 kb on - strand, within Echvi_0637 at 721.986 kb on - strand, within Echvi_0637 at 721.988 kb on + strand, within Echvi_0637 at 721.989 kb on - strand, within Echvi_0637 at 721.989 kb on - strand, within Echvi_0637 at 721.997 kb on + strand, within Echvi_0637 at 721.997 kb on + strand, within Echvi_0637 at 722.012 kb on + strand, within Echvi_0637 at 722.014 kb on + strand, within Echvi_0637 at 722.094 kb on - strand, within Echvi_0637 at 722.094 kb on - strand, within Echvi_0637 at 722.125 kb on + strand at 722.134 kb on + strand at 722.171 kb on + strand at 722.171 kb on + strand at 722.172 kb on - strand at 722.277 kb on + strand at 722.277 kb on + strand at 722.278 kb on - strand at 722.292 kb on + strand at 722.293 kb on - strand at 722.314 kb on + strand at 722.333 kb on + strand at 722.333 kb on + strand at 722.333 kb on + strand at 722.333 kb on + strand at 722.333 kb on + strand at 722.334 kb on - strand at 722.337 kb on + strand at 722.337 kb on + strand at 722.338 kb on - strand at 722.338 kb on - strand at 722.367 kb on + strand at 722.432 kb on + strand at 722.432 kb on + strand at 722.433 kb on - strand at 722.591 kb on - strand, within Echvi_0638 at 722.659 kb on - strand, within Echvi_0638 at 722.742 kb on + strand, within Echvi_0638 at 722.743 kb on - strand, within Echvi_0638 at 722.748 kb on + strand, within Echvi_0638 at 722.797 kb on - strand, within Echvi_0638 at 722.829 kb on - strand, within Echvi_0638 at 722.912 kb on - strand, within Echvi_0638 at 722.914 kb on + strand, within Echvi_0638 at 722.914 kb on + strand, within Echvi_0638 at 722.915 kb on - strand, within Echvi_0638 at 722.915 kb on - strand, within Echvi_0638 at 722.986 kb on + strand, within Echvi_0638 at 722.986 kb on + strand, within Echvi_0638 at 722.987 kb on - strand, within Echvi_0638 at 723.005 kb on + strand, within Echvi_0638 at 723.093 kb on - strand at 723.109 kb on + strand at 723.127 kb on - strand at 723.149 kb on - strand at 723.156 kb on + strand at 723.156 kb on + strand at 723.157 kb on - strand at 723.265 kb on + strand at 723.265 kb on + strand at 723.266 kb on - strand at 723.266 kb on - strand at 723.298 kb on + strand at 723.298 kb on + strand at 723.298 kb on + strand at 723.298 kb on + strand at 723.299 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.8 mM remove 719,264 - +0.1 719,281 - -0.4 719,328 + -2.7 719,329 - -0.2 719,353 + +0.0 719,353 + -0.4 719,353 + -0.6 719,354 - -0.7 719,357 + -1.1 719,369 + -0.5 719,369 + -0.2 719,369 + -0.8 719,373 + +0.5 719,374 - -0.5 719,374 - -0.0 719,374 - +1.1 719,374 - +0.2 719,439 + -0.2 719,439 + -0.8 719,439 + -0.5 719,439 + -0.3 719,439 + -1.5 719,439 + +0.1 719,439 + +1.1 719,439 + -0.8 719,440 - +0.1 719,440 - -0.4 719,440 - -0.0 719,453 + -1.4 719,873 + +0.2 719,873 + +0.6 719,912 + Echvi_0636 0.10 -0.2 719,912 + Echvi_0636 0.10 -0.1 719,958 + +1.1 719,959 - Echvi_0636 0.24 -1.8 719,967 + Echvi_0636 0.26 -2.6 719,967 + Echvi_0636 0.26 -1.6 719,968 - Echvi_0636 0.26 -2.7 720,028 + Echvi_0636 0.44 -1.0 720,035 + Echvi_0636 0.46 -1.8 720,036 - Echvi_0636 0.46 -0.6 720,045 + Echvi_0636 0.49 -2.0 720,046 - Echvi_0636 0.49 -0.6 720,062 + Echvi_0636 0.54 -1.1 720,063 - Echvi_0636 0.54 -1.9 720,069 + Echvi_0636 0.56 -1.8 720,069 + Echvi_0636 0.56 -0.5 720,070 - Echvi_0636 0.56 -1.9 720,124 - Echvi_0636 0.72 +0.1 720,124 - Echvi_0636 0.72 -0.6 720,149 + Echvi_0636 0.79 -0.3 720,149 + Echvi_0636 0.79 -2.2 720,185 + Echvi_0636 0.89 -1.3 720,185 + Echvi_0636 0.89 -2.0 720,186 - Echvi_0636 0.90 -0.6 720,186 - Echvi_0636 0.90 -2.1 720,186 - Echvi_0636 0.90 -2.4 720,186 - Echvi_0636 0.90 -1.2 720,209 + -1.0 720,210 - -0.3 720,221 + +0.0 720,221 + -3.5 720,221 + -1.2 720,222 - +1.8 720,222 - +0.1 720,222 - -1.2 720,229 + -0.5 720,230 - -2.2 720,231 + -0.4 720,231 + -0.9 720,231 + -1.8 720,231 + -0.1 720,231 + -0.7 720,231 + -1.4 720,283 + -0.5 720,284 - -1.0 720,284 - -0.3 720,336 + -1.6 720,337 - -1.5 720,372 - -1.1 720,372 - -1.1 720,373 + -2.3 720,373 + +0.2 720,373 + -2.7 720,373 + -0.4 720,373 + -2.4 720,373 + -1.2 720,377 + -1.6 720,377 + -0.7 720,377 + -0.3 720,385 - +0.4 720,403 + -4.1 720,441 - -2.2 720,452 + -1.6 720,454 + Echvi_0637 0.10 +1.4 720,454 + Echvi_0637 0.10 -0.3 720,454 + Echvi_0637 0.10 -1.8 720,454 + Echvi_0637 0.10 +0.2 720,454 + Echvi_0637 0.10 -1.9 720,455 - Echvi_0637 0.10 -1.1 720,514 + Echvi_0637 0.13 -1.6 720,518 + Echvi_0637 0.13 -0.9 720,589 + Echvi_0637 0.17 -2.2 720,589 + Echvi_0637 0.17 -1.6 720,592 + Echvi_0637 0.17 -1.4 720,627 - Echvi_0637 0.18 -0.9 720,627 - Echvi_0637 0.18 -0.9 720,656 - Echvi_0637 0.20 -2.3 720,656 - Echvi_0637 0.20 -0.6 720,659 - Echvi_0637 0.20 -1.5 720,663 - Echvi_0637 0.20 +1.7 720,663 - Echvi_0637 0.20 -3.5 720,751 - Echvi_0637 0.24 -2.8 720,751 - Echvi_0637 0.24 -0.5 720,751 - Echvi_0637 0.24 -2.0 720,788 + Echvi_0637 0.26 +1.4 720,789 - Echvi_0637 0.26 -1.5 720,789 - Echvi_0637 0.26 -2.5 720,868 + Echvi_0637 0.30 -2.1 720,872 - Echvi_0637 0.30 -1.8 720,882 + Echvi_0637 0.31 -2.1 720,929 + Echvi_0637 0.33 -2.7 720,993 - Echvi_0637 0.36 -2.0 721,077 - Echvi_0637 0.40 -2.3 721,079 + Echvi_0637 0.40 -2.0 721,079 + Echvi_0637 0.40 -0.8 721,079 + Echvi_0637 0.40 -1.6 721,079 + Echvi_0637 0.40 -2.2 721,115 + Echvi_0637 0.42 -1.2 721,116 - Echvi_0637 0.42 -0.7 721,145 + Echvi_0637 0.43 -2.4 721,145 + Echvi_0637 0.43 -0.9 721,145 + Echvi_0637 0.43 -2.4 721,146 - Echvi_0637 0.44 -2.1 721,146 - Echvi_0637 0.44 -0.4 721,146 - Echvi_0637 0.44 -2.0 721,150 - Echvi_0637 0.44 -1.7 721,290 - Echvi_0637 0.51 -1.2 721,290 - Echvi_0637 0.51 -2.6 721,298 + Echvi_0637 0.51 -0.9 721,298 + Echvi_0637 0.51 -3.0 721,350 + Echvi_0637 0.53 -0.6 721,405 - Echvi_0637 0.56 -2.0 721,405 - Echvi_0637 0.56 -0.6 721,452 + Echvi_0637 0.58 -2.0 721,478 + Echvi_0637 0.60 -4.2 721,479 - Echvi_0637 0.60 -2.6 721,514 + Echvi_0637 0.61 -1.3 721,514 + Echvi_0637 0.61 -1.5 721,742 + Echvi_0637 0.72 +0.1 721,810 + Echvi_0637 0.76 -1.7 721,811 - Echvi_0637 0.76 -1.7 721,813 - Echvi_0637 0.76 -1.0 721,813 - Echvi_0637 0.76 -2.0 721,816 + Echvi_0637 0.76 -2.9 721,817 - Echvi_0637 0.76 -0.3 721,823 + Echvi_0637 0.76 -1.8 721,823 + Echvi_0637 0.76 +0.5 721,823 + Echvi_0637 0.76 -1.6 721,831 - Echvi_0637 0.77 -2.6 721,846 + Echvi_0637 0.77 -1.9 721,847 - Echvi_0637 0.77 +0.1 721,849 - Echvi_0637 0.78 -1.3 721,849 - Echvi_0637 0.78 -2.0 721,849 - Echvi_0637 0.78 -2.9 721,849 - Echvi_0637 0.78 -0.1 721,849 - Echvi_0637 0.78 -3.4 721,868 + Echvi_0637 0.78 -2.7 721,886 - Echvi_0637 0.79 -2.0 721,985 + Echvi_0637 0.84 -1.3 721,985 + Echvi_0637 0.84 -1.8 721,985 + Echvi_0637 0.84 -0.1 721,985 + Echvi_0637 0.84 -1.1 721,986 - Echvi_0637 0.84 -2.2 721,986 - Echvi_0637 0.84 -1.2 721,986 - Echvi_0637 0.84 +0.1 721,986 - Echvi_0637 0.84 -3.1 721,988 + Echvi_0637 0.84 -0.1 721,989 - Echvi_0637 0.84 -1.2 721,989 - Echvi_0637 0.84 -2.4 721,997 + Echvi_0637 0.85 -1.9 721,997 + Echvi_0637 0.85 -1.6 722,012 + Echvi_0637 0.85 -1.9 722,014 + Echvi_0637 0.86 -1.4 722,094 - Echvi_0637 0.89 -1.4 722,094 - Echvi_0637 0.89 +0.3 722,125 + -1.2 722,134 + -3.3 722,171 + -1.8 722,171 + -0.2 722,172 - -0.8 722,277 + +0.1 722,277 + -0.8 722,278 - -0.9 722,292 + -2.9 722,293 - -0.8 722,314 + -3.6 722,333 + -1.3 722,333 + -0.3 722,333 + -0.4 722,333 + -1.2 722,333 + -1.1 722,334 - +0.1 722,337 + -0.1 722,337 + -1.5 722,338 - -0.9 722,338 - +1.5 722,367 + -0.4 722,432 + -0.7 722,432 + -0.0 722,433 - +2.3 722,591 - Echvi_0638 0.27 +0.1 722,659 - Echvi_0638 0.37 +0.8 722,742 + Echvi_0638 0.48 +0.3 722,743 - Echvi_0638 0.49 +0.3 722,748 + Echvi_0638 0.49 -0.7 722,797 - Echvi_0638 0.56 -0.3 722,829 - Echvi_0638 0.61 +0.6 722,912 - Echvi_0638 0.72 -0.3 722,914 + Echvi_0638 0.72 -0.5 722,914 + Echvi_0638 0.72 +1.3 722,915 - Echvi_0638 0.73 +0.1 722,915 - Echvi_0638 0.73 +0.5 722,986 + Echvi_0638 0.82 +0.3 722,986 + Echvi_0638 0.82 -0.0 722,987 - Echvi_0638 0.83 +0.5 723,005 + Echvi_0638 0.85 +1.5 723,093 - +0.7 723,109 + -1.6 723,127 - -1.4 723,149 - -0.9 723,156 + -0.2 723,156 + -1.7 723,157 - +0.0 723,265 + +2.3 723,265 + -0.2 723,266 - +0.0 723,266 - -0.2 723,298 + +0.2 723,298 + -0.4 723,298 + -0.4 723,298 + -1.0 723,299 - +0.4
Or see this region's nucleotide sequence