Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0344

Experiment: m.b. Cobalt chloride 0.8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0342 and Echvi_0343 are separated by 1 nucleotidesEchvi_0343 and Echvi_0344 are separated by 65 nucleotidesEchvi_0344 and Echvi_0345 are separated by 122 nucleotidesEchvi_0345 and Echvi_0346 are separated by 81 nucleotides Echvi_0342: Echvi_0342 - ATP-dependent DNA helicase, RecQ family, at 363,196 to 365,118 _0342 Echvi_0343: Echvi_0343 - Enoyl-CoA hydratase/carnithine racemase, at 365,120 to 365,896 _0343 Echvi_0344: Echvi_0344 - ComEC/Rec2-related protein, at 365,962 to 367,920 _0344 Echvi_0345: Echvi_0345 - hypothetical protein, at 368,043 to 368,585 _0345 Echvi_0346: Echvi_0346 - Predicted acyltransferase, at 368,667 to 369,107 _0346 Position (kb) 365 366 367 368Strain fitness (log2 ratio) -2 -1 0 1 2 3at 365.121 kb on + strandat 365.121 kb on + strandat 365.122 kb on - strandat 365.211 kb on + strand, within Echvi_0343at 365.211 kb on + strand, within Echvi_0343at 365.211 kb on + strand, within Echvi_0343at 365.299 kb on + strand, within Echvi_0343at 365.369 kb on + strand, within Echvi_0343at 365.370 kb on - strand, within Echvi_0343at 365.611 kb on + strand, within Echvi_0343at 365.612 kb on - strand, within Echvi_0343at 365.612 kb on - strand, within Echvi_0343at 365.612 kb on - strand, within Echvi_0343at 365.613 kb on + strand, within Echvi_0343at 365.613 kb on + strand, within Echvi_0343at 365.614 kb on - strand, within Echvi_0343at 365.614 kb on - strand, within Echvi_0343at 365.614 kb on - strand, within Echvi_0343at 365.672 kb on - strand, within Echvi_0343at 365.854 kb on - strandat 365.913 kb on + strandat 365.914 kb on - strandat 365.914 kb on - strandat 365.923 kb on + strandat 365.980 kb on + strandat 366.048 kb on - strandat 366.066 kb on + strandat 366.126 kb on - strandat 366.181 kb on - strand, within Echvi_0344at 366.213 kb on - strand, within Echvi_0344at 366.213 kb on - strand, within Echvi_0344at 366.272 kb on + strand, within Echvi_0344at 366.272 kb on + strand, within Echvi_0344at 366.273 kb on - strand, within Echvi_0344at 366.273 kb on - strand, within Echvi_0344at 366.300 kb on + strand, within Echvi_0344at 366.300 kb on + strand, within Echvi_0344at 366.301 kb on - strand, within Echvi_0344at 366.302 kb on + strand, within Echvi_0344at 366.302 kb on + strand, within Echvi_0344at 366.302 kb on + strand, within Echvi_0344at 366.303 kb on - strand, within Echvi_0344at 366.303 kb on - strand, within Echvi_0344at 366.309 kb on - strand, within Echvi_0344at 366.310 kb on + strand, within Echvi_0344at 366.310 kb on + strand, within Echvi_0344at 366.311 kb on - strand, within Echvi_0344at 366.311 kb on - strand, within Echvi_0344at 366.311 kb on - strand, within Echvi_0344at 366.311 kb on - strand, within Echvi_0344at 366.389 kb on + strand, within Echvi_0344at 366.395 kb on + strand, within Echvi_0344at 366.396 kb on - strand, within Echvi_0344at 366.396 kb on - strand, within Echvi_0344at 366.396 kb on - strand, within Echvi_0344at 366.425 kb on + strand, within Echvi_0344at 366.476 kb on + strand, within Echvi_0344at 366.541 kb on + strand, within Echvi_0344at 366.693 kb on - strand, within Echvi_0344at 366.695 kb on + strand, within Echvi_0344at 366.696 kb on - strand, within Echvi_0344at 366.761 kb on + strand, within Echvi_0344at 366.761 kb on + strand, within Echvi_0344at 366.762 kb on - strand, within Echvi_0344at 366.762 kb on - strand, within Echvi_0344at 366.762 kb on - strand, within Echvi_0344at 366.771 kb on + strand, within Echvi_0344at 366.772 kb on - strand, within Echvi_0344at 366.836 kb on + strand, within Echvi_0344at 366.864 kb on + strand, within Echvi_0344at 366.865 kb on - strand, within Echvi_0344at 366.869 kb on + strand, within Echvi_0344at 366.869 kb on + strand, within Echvi_0344at 366.869 kb on + strand, within Echvi_0344at 366.870 kb on - strand, within Echvi_0344at 366.912 kb on + strand, within Echvi_0344at 366.913 kb on - strand, within Echvi_0344at 367.025 kb on - strand, within Echvi_0344at 367.109 kb on + strand, within Echvi_0344at 367.113 kb on + strand, within Echvi_0344at 367.113 kb on + strand, within Echvi_0344at 367.126 kb on + strand, within Echvi_0344at 367.169 kb on + strand, within Echvi_0344at 367.170 kb on - strand, within Echvi_0344at 367.294 kb on + strand, within Echvi_0344at 367.294 kb on + strand, within Echvi_0344at 367.321 kb on - strand, within Echvi_0344at 367.321 kb on - strand, within Echvi_0344at 367.371 kb on - strand, within Echvi_0344at 367.499 kb on + strand, within Echvi_0344at 367.550 kb on + strand, within Echvi_0344at 367.550 kb on + strand, within Echvi_0344at 367.551 kb on - strand, within Echvi_0344at 367.554 kb on + strand, within Echvi_0344at 367.619 kb on + strand, within Echvi_0344at 367.619 kb on + strand, within Echvi_0344at 367.676 kb on - strand, within Echvi_0344at 367.683 kb on + strand, within Echvi_0344at 367.746 kb on + strandat 367.839 kb on + strandat 367.856 kb on + strandat 367.856 kb on + strandat 367.856 kb on + strandat 367.856 kb on + strandat 367.856 kb on + strandat 367.856 kb on + strandat 367.857 kb on - strandat 367.857 kb on - strandat 367.857 kb on - strandat 367.857 kb on - strandat 367.889 kb on + strandat 367.889 kb on + strandat 367.890 kb on - strandat 367.890 kb on - strandat 367.944 kb on - strandat 367.944 kb on - strandat 367.944 kb on - strandat 367.954 kb on - strandat 368.029 kb on + strandat 368.044 kb on + strandat 368.077 kb on - strandat 368.133 kb on + strand, within Echvi_0345at 368.133 kb on + strand, within Echvi_0345at 368.134 kb on - strand, within Echvi_0345at 368.177 kb on - strand, within Echvi_0345at 368.270 kb on + strand, within Echvi_0345at 368.270 kb on + strand, within Echvi_0345at 368.271 kb on - strand, within Echvi_0345at 368.271 kb on - strand, within Echvi_0345at 368.287 kb on + strand, within Echvi_0345at 368.287 kb on + strand, within Echvi_0345at 368.287 kb on + strand, within Echvi_0345at 368.287 kb on + strand, within Echvi_0345at 368.288 kb on - strand, within Echvi_0345at 368.288 kb on - strand, within Echvi_0345at 368.288 kb on - strand, within Echvi_0345at 368.288 kb on - strand, within Echvi_0345at 368.291 kb on + strand, within Echvi_0345at 368.291 kb on + strand, within Echvi_0345at 368.291 kb on + strand, within Echvi_0345at 368.291 kb on + strand, within Echvi_0345at 368.291 kb on + strand, within Echvi_0345at 368.292 kb on - strand, within Echvi_0345at 368.384 kb on + strand, within Echvi_0345at 368.483 kb on + strand, within Echvi_0345at 368.484 kb on - strand, within Echvi_0345at 368.484 kb on - strand, within Echvi_0345at 368.533 kb on + strandat 368.534 kb on - strandat 368.567 kb on + strandat 368.568 kb on - strandat 368.568 kb on - strandat 368.568 kb on - strandat 368.571 kb on + strandat 368.571 kb on + strandat 368.572 kb on - strandat 368.572 kb on - strandat 368.575 kb on - strandat 368.590 kb on + strandat 368.594 kb on + strandat 368.594 kb on + strandat 368.653 kb on + strandat 368.674 kb on + strandat 368.749 kb on + strand, within Echvi_0346at 368.750 kb on - strand, within Echvi_0346at 368.782 kb on + strand, within Echvi_0346at 368.782 kb on + strand, within Echvi_0346at 368.782 kb on + strand, within Echvi_0346at 368.782 kb on + strand, within Echvi_0346at 368.782 kb on + strand, within Echvi_0346at 368.831 kb on + strand, within Echvi_0346

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.8 mM
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365,121 + -1.0
365,121 + +1.2
365,122 - -1.4
365,211 + Echvi_0343 0.12 -0.3
365,211 + Echvi_0343 0.12 -1.7
365,211 + Echvi_0343 0.12 +0.7
365,299 + Echvi_0343 0.23 +0.0
365,369 + Echvi_0343 0.32 -0.3
365,370 - Echvi_0343 0.32 +0.7
365,611 + Echvi_0343 0.63 +0.7
365,612 - Echvi_0343 0.63 +0.2
365,612 - Echvi_0343 0.63 -1.4
365,612 - Echvi_0343 0.63 -0.8
365,613 + Echvi_0343 0.63 +0.0
365,613 + Echvi_0343 0.63 +0.3
365,614 - Echvi_0343 0.64 +0.2
365,614 - Echvi_0343 0.64 +0.8
365,614 - Echvi_0343 0.64 -1.1
365,672 - Echvi_0343 0.71 -0.1
365,854 - -0.7
365,913 + -0.4
365,914 - +0.2
365,914 - -0.4
365,923 + -0.3
365,980 + +0.6
366,048 - -1.4
366,066 + +0.9
366,126 - -1.1
366,181 - Echvi_0344 0.11 -1.4
366,213 - Echvi_0344 0.13 +0.5
366,213 - Echvi_0344 0.13 -1.3
366,272 + Echvi_0344 0.16 -2.3
366,272 + Echvi_0344 0.16 -0.4
366,273 - Echvi_0344 0.16 +1.1
366,273 - Echvi_0344 0.16 -1.5
366,300 + Echvi_0344 0.17 +2.5
366,300 + Echvi_0344 0.17 -0.7
366,301 - Echvi_0344 0.17 -2.2
366,302 + Echvi_0344 0.17 +0.1
366,302 + Echvi_0344 0.17 -0.6
366,302 + Echvi_0344 0.17 -0.2
366,303 - Echvi_0344 0.17 -0.3
366,303 - Echvi_0344 0.17 -0.6
366,309 - Echvi_0344 0.18 +0.1
366,310 + Echvi_0344 0.18 +0.0
366,310 + Echvi_0344 0.18 -0.1
366,311 - Echvi_0344 0.18 -1.5
366,311 - Echvi_0344 0.18 -0.5
366,311 - Echvi_0344 0.18 -1.4
366,311 - Echvi_0344 0.18 -1.0
366,389 + Echvi_0344 0.22 -0.4
366,395 + Echvi_0344 0.22 -0.9
366,396 - Echvi_0344 0.22 -1.3
366,396 - Echvi_0344 0.22 -0.7
366,396 - Echvi_0344 0.22 -0.6
366,425 + Echvi_0344 0.24 +0.6
366,476 + Echvi_0344 0.26 +0.1
366,541 + Echvi_0344 0.30 -0.2
366,693 - Echvi_0344 0.37 -1.9
366,695 + Echvi_0344 0.37 +0.3
366,696 - Echvi_0344 0.37 -0.6
366,761 + Echvi_0344 0.41 +0.6
366,761 + Echvi_0344 0.41 +0.8
366,762 - Echvi_0344 0.41 -0.4
366,762 - Echvi_0344 0.41 -0.4
366,762 - Echvi_0344 0.41 -1.6
366,771 + Echvi_0344 0.41 +0.7
366,772 - Echvi_0344 0.41 +0.1
366,836 + Echvi_0344 0.45 -1.3
366,864 + Echvi_0344 0.46 +0.1
366,865 - Echvi_0344 0.46 -0.4
366,869 + Echvi_0344 0.46 +0.4
366,869 + Echvi_0344 0.46 -0.4
366,869 + Echvi_0344 0.46 +0.8
366,870 - Echvi_0344 0.46 -0.0
366,912 + Echvi_0344 0.48 -0.6
366,913 - Echvi_0344 0.49 -0.3
367,025 - Echvi_0344 0.54 -1.5
367,109 + Echvi_0344 0.59 -0.2
367,113 + Echvi_0344 0.59 -0.4
367,113 + Echvi_0344 0.59 +0.8
367,126 + Echvi_0344 0.59 -0.0
367,169 + Echvi_0344 0.62 -0.1
367,170 - Echvi_0344 0.62 +0.2
367,294 + Echvi_0344 0.68 +0.2
367,294 + Echvi_0344 0.68 +0.2
367,321 - Echvi_0344 0.69 +0.8
367,321 - Echvi_0344 0.69 +0.4
367,371 - Echvi_0344 0.72 -0.2
367,499 + Echvi_0344 0.78 +1.4
367,550 + Echvi_0344 0.81 +1.2
367,550 + Echvi_0344 0.81 -0.7
367,551 - Echvi_0344 0.81 -1.9
367,554 + Echvi_0344 0.81 +0.5
367,619 + Echvi_0344 0.85 -0.5
367,619 + Echvi_0344 0.85 +0.5
367,676 - Echvi_0344 0.87 -1.8
367,683 + Echvi_0344 0.88 +0.9
367,746 + -0.3
367,839 + -0.2
367,856 + +0.4
367,856 + +0.1
367,856 + -1.3
367,856 + -0.6
367,856 + -1.3
367,856 + -2.0
367,857 - -1.7
367,857 - -1.0
367,857 - -0.1
367,857 - -0.1
367,889 + -0.1
367,889 + -0.1
367,890 - +0.3
367,890 - +0.2
367,944 - -1.1
367,944 - +0.7
367,944 - +0.0
367,954 - -0.4
368,029 + +1.2
368,044 + -0.4
368,077 - -0.4
368,133 + Echvi_0345 0.17 +0.4
368,133 + Echvi_0345 0.17 +0.8
368,134 - Echvi_0345 0.17 +1.9
368,177 - Echvi_0345 0.25 -0.4
368,270 + Echvi_0345 0.42 +0.0
368,270 + Echvi_0345 0.42 +1.5
368,271 - Echvi_0345 0.42 -0.1
368,271 - Echvi_0345 0.42 +1.1
368,287 + Echvi_0345 0.45 +1.4
368,287 + Echvi_0345 0.45 +0.9
368,287 + Echvi_0345 0.45 -0.4
368,287 + Echvi_0345 0.45 +1.0
368,288 - Echvi_0345 0.45 -0.5
368,288 - Echvi_0345 0.45 +2.8
368,288 - Echvi_0345 0.45 -0.1
368,288 - Echvi_0345 0.45 +1.7
368,291 + Echvi_0345 0.46 -0.6
368,291 + Echvi_0345 0.46 -0.2
368,291 + Echvi_0345 0.46 +0.4
368,291 + Echvi_0345 0.46 -0.7
368,291 + Echvi_0345 0.46 -0.1
368,292 - Echvi_0345 0.46 +0.2
368,384 + Echvi_0345 0.63 -0.1
368,483 + Echvi_0345 0.81 +0.0
368,484 - Echvi_0345 0.81 -0.7
368,484 - Echvi_0345 0.81 +1.7
368,533 + -0.5
368,534 - +1.0
368,567 + +0.4
368,568 - +0.6
368,568 - +0.7
368,568 - -1.5
368,571 + +1.4
368,571 + -0.7
368,572 - -0.5
368,572 - +0.6
368,575 - +0.2
368,590 + -0.6
368,594 + -0.2
368,594 + -2.2
368,653 + -0.5
368,674 + +1.4
368,749 + Echvi_0346 0.19 -2.2
368,750 - Echvi_0346 0.19 -0.4
368,782 + Echvi_0346 0.26 +1.5
368,782 + Echvi_0346 0.26 -0.6
368,782 + Echvi_0346 0.26 -0.8
368,782 + Echvi_0346 0.26 -0.4
368,782 + Echvi_0346 0.26 +0.6
368,831 + Echvi_0346 0.37 -0.4

Or see this region's nucleotide sequence