Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0291

Experiment: m.b. Cobalt chloride 0.8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0289 and Echvi_0290 are separated by 13 nucleotidesEchvi_0290 and Echvi_0291 overlap by 1 nucleotidesEchvi_0291 and Echvi_0292 are separated by 45 nucleotides Echvi_0289: Echvi_0289 - hypothetical protein, at 299,992 to 300,105 _0289 Echvi_0290: Echvi_0290 - hypothetical protein, at 300,119 to 300,526 _0290 Echvi_0291: Echvi_0291 - hypothetical protein, at 300,526 to 300,633 _0291 Echvi_0292: Echvi_0292 - Superfamily I DNA and RNA helicases, at 300,679 to 302,937 _0292 Position (kb) 300 301Strain fitness (log2 ratio) -2 -1 0 1 2at 299.528 kb on + strandat 299.528 kb on + strandat 299.529 kb on - strandat 299.529 kb on - strandat 299.550 kb on - strandat 299.550 kb on - strandat 299.600 kb on + strandat 299.601 kb on - strandat 299.601 kb on - strandat 299.601 kb on - strandat 299.602 kb on + strandat 299.603 kb on - strandat 299.610 kb on - strandat 299.617 kb on + strandat 299.618 kb on - strandat 299.618 kb on - strandat 299.621 kb on - strandat 299.633 kb on + strandat 299.634 kb on - strandat 299.634 kb on - strandat 299.634 kb on - strandat 299.634 kb on - strandat 299.640 kb on + strandat 299.643 kb on - strandat 299.654 kb on - strandat 299.667 kb on - strandat 299.770 kb on + strandat 299.770 kb on + strandat 299.770 kb on + strandat 299.772 kb on + strandat 299.773 kb on - strandat 299.821 kb on - strandat 299.848 kb on - strandat 299.884 kb on - strandat 299.892 kb on + strandat 299.892 kb on + strandat 299.892 kb on + strandat 299.892 kb on + strandat 299.892 kb on + strandat 299.893 kb on - strandat 299.893 kb on - strandat 299.893 kb on - strandat 299.895 kb on + strandat 299.895 kb on + strandat 299.895 kb on + strandat 299.896 kb on - strandat 299.896 kb on - strandat 299.896 kb on - strandat 299.901 kb on - strandat 299.914 kb on + strandat 299.914 kb on + strandat 299.914 kb on + strandat 299.925 kb on + strandat 299.926 kb on - strandat 299.926 kb on - strandat 299.930 kb on - strandat 299.930 kb on - strandat 299.947 kb on + strandat 299.981 kb on + strandat 299.989 kb on + strandat 299.990 kb on - strandat 299.993 kb on + strandat 299.993 kb on + strandat 299.994 kb on - strandat 300.006 kb on + strand, within Echvi_0289at 300.011 kb on - strand, within Echvi_0289at 300.011 kb on - strand, within Echvi_0289at 300.011 kb on - strand, within Echvi_0289at 300.024 kb on + strand, within Echvi_0289at 300.037 kb on + strand, within Echvi_0289at 300.037 kb on + strand, within Echvi_0289at 300.038 kb on - strand, within Echvi_0289at 300.038 kb on - strand, within Echvi_0289at 300.038 kb on - strand, within Echvi_0289at 300.042 kb on - strand, within Echvi_0289at 300.042 kb on - strand, within Echvi_0289at 300.042 kb on - strand, within Echvi_0289at 300.050 kb on - strand, within Echvi_0289at 300.050 kb on - strand, within Echvi_0289at 300.050 kb on - strand, within Echvi_0289at 300.086 kb on - strand, within Echvi_0289at 300.118 kb on + strandat 300.119 kb on - strandat 300.119 kb on - strandat 300.127 kb on + strandat 300.128 kb on - strandat 300.133 kb on + strandat 300.145 kb on - strandat 300.169 kb on + strand, within Echvi_0290at 300.169 kb on + strand, within Echvi_0290at 300.212 kb on + strand, within Echvi_0290at 300.236 kb on + strand, within Echvi_0290at 300.236 kb on + strand, within Echvi_0290at 300.236 kb on + strand, within Echvi_0290at 300.236 kb on + strand, within Echvi_0290at 300.237 kb on - strand, within Echvi_0290at 300.237 kb on - strand, within Echvi_0290at 300.237 kb on - strand, within Echvi_0290at 300.237 kb on - strand, within Echvi_0290at 300.238 kb on + strand, within Echvi_0290at 300.239 kb on - strand, within Echvi_0290at 300.239 kb on - strand, within Echvi_0290at 300.285 kb on - strand, within Echvi_0290at 300.307 kb on + strand, within Echvi_0290at 300.318 kb on + strand, within Echvi_0290at 300.326 kb on + strand, within Echvi_0290at 300.326 kb on + strand, within Echvi_0290at 300.326 kb on + strand, within Echvi_0290at 300.327 kb on - strand, within Echvi_0290at 300.327 kb on - strand, within Echvi_0290at 300.327 kb on - strand, within Echvi_0290at 300.327 kb on - strand, within Echvi_0290at 300.327 kb on - strand, within Echvi_0290at 300.328 kb on + strand, within Echvi_0290at 300.328 kb on + strand, within Echvi_0290at 300.329 kb on - strand, within Echvi_0290at 300.385 kb on - strand, within Echvi_0290at 300.409 kb on + strand, within Echvi_0290at 300.476 kb on + strand, within Echvi_0290at 300.477 kb on - strand, within Echvi_0290at 300.509 kb on - strandat 300.536 kb on + strandat 300.609 kb on + strand, within Echvi_0291at 300.609 kb on + strand, within Echvi_0291at 300.632 kb on - strandat 300.640 kb on + strandat 300.640 kb on + strandat 300.641 kb on - strandat 300.641 kb on - strandat 300.641 kb on - strandat 300.650 kb on - strandat 300.662 kb on + strandat 300.662 kb on + strandat 300.663 kb on - strandat 300.675 kb on + strandat 300.676 kb on - strandat 300.678 kb on + strandat 300.678 kb on + strandat 300.685 kb on + strandat 300.690 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.8 mM
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299,528 + +0.5
299,528 + -0.4
299,529 - -1.4
299,529 - +0.3
299,550 - -0.6
299,550 - +0.7
299,600 + -0.5
299,601 - +0.1
299,601 - -1.6
299,601 - -0.1
299,602 + +0.4
299,603 - +0.1
299,610 - +0.7
299,617 + +1.1
299,618 - -0.6
299,618 - -0.9
299,621 - -0.2
299,633 + +1.0
299,634 - +0.1
299,634 - -1.3
299,634 - +0.2
299,634 - +0.2
299,640 + +0.1
299,643 - +0.5
299,654 - +0.5
299,667 - -0.4
299,770 + -0.3
299,770 + -0.4
299,770 + +1.5
299,772 + -0.6
299,773 - -0.7
299,821 - -0.9
299,848 - +0.1
299,884 - +0.4
299,892 + -1.8
299,892 + -0.6
299,892 + -0.0
299,892 + -0.1
299,892 + -0.2
299,893 - -0.4
299,893 - +0.6
299,893 - -1.1
299,895 + +0.2
299,895 + +2.4
299,895 + +2.3
299,896 - +0.1
299,896 - -0.6
299,896 - +1.7
299,901 - +0.6
299,914 + -0.0
299,914 + +1.5
299,914 + -1.3
299,925 + -1.1
299,926 - -0.6
299,926 - +0.7
299,930 - +0.6
299,930 - -1.2
299,947 + -0.4
299,981 + -0.8
299,989 + -0.3
299,990 - +0.2
299,993 + -1.6
299,993 + +0.4
299,994 - +0.0
300,006 + Echvi_0289 0.12 +0.5
300,011 - Echvi_0289 0.17 +0.1
300,011 - Echvi_0289 0.17 +0.0
300,011 - Echvi_0289 0.17 -0.9
300,024 + Echvi_0289 0.28 +0.2
300,037 + Echvi_0289 0.39 +0.4
300,037 + Echvi_0289 0.39 +0.6
300,038 - Echvi_0289 0.40 -0.2
300,038 - Echvi_0289 0.40 -1.6
300,038 - Echvi_0289 0.40 +0.6
300,042 - Echvi_0289 0.44 +0.2
300,042 - Echvi_0289 0.44 -0.5
300,042 - Echvi_0289 0.44 +1.5
300,050 - Echvi_0289 0.51 +2.1
300,050 - Echvi_0289 0.51 +0.4
300,050 - Echvi_0289 0.51 +0.1
300,086 - Echvi_0289 0.82 -0.8
300,118 + -1.3
300,119 - +0.7
300,119 - -0.1
300,127 + -0.1
300,128 - -2.6
300,133 + -0.5
300,145 - +0.3
300,169 + Echvi_0290 0.12 -0.0
300,169 + Echvi_0290 0.12 -0.5
300,212 + Echvi_0290 0.23 +1.1
300,236 + Echvi_0290 0.29 -0.9
300,236 + Echvi_0290 0.29 -1.1
300,236 + Echvi_0290 0.29 -0.3
300,236 + Echvi_0290 0.29 +0.2
300,237 - Echvi_0290 0.29 -0.1
300,237 - Echvi_0290 0.29 +1.5
300,237 - Echvi_0290 0.29 -0.2
300,237 - Echvi_0290 0.29 -0.2
300,238 + Echvi_0290 0.29 -0.7
300,239 - Echvi_0290 0.29 -0.8
300,239 - Echvi_0290 0.29 -0.3
300,285 - Echvi_0290 0.41 +0.0
300,307 + Echvi_0290 0.46 +0.5
300,318 + Echvi_0290 0.49 +0.3
300,326 + Echvi_0290 0.51 +0.4
300,326 + Echvi_0290 0.51 +0.2
300,326 + Echvi_0290 0.51 -0.5
300,327 - Echvi_0290 0.51 -1.3
300,327 - Echvi_0290 0.51 -0.1
300,327 - Echvi_0290 0.51 +0.3
300,327 - Echvi_0290 0.51 +0.4
300,327 - Echvi_0290 0.51 +0.1
300,328 + Echvi_0290 0.51 +0.4
300,328 + Echvi_0290 0.51 +0.6
300,329 - Echvi_0290 0.51 -1.9
300,385 - Echvi_0290 0.65 +0.6
300,409 + Echvi_0290 0.71 +1.3
300,476 + Echvi_0290 0.88 -1.6
300,477 - Echvi_0290 0.88 -1.0
300,509 - +0.1
300,536 + -1.1
300,609 + Echvi_0291 0.77 -0.6
300,609 + Echvi_0291 0.77 -0.0
300,632 - -1.6
300,640 + -1.8
300,640 + -0.2
300,641 - -0.6
300,641 - +0.4
300,641 - -0.0
300,650 - +1.0
300,662 + +0.2
300,662 + +0.1
300,663 - +0.3
300,675 + -1.7
300,676 - -1.7
300,678 + +0.6
300,678 + -0.6
300,685 + -0.4
300,690 - -0.9

Or see this region's nucleotide sequence