Experiment: m.b. Cobalt chloride 0.8 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0014 and Echvi_0015 are separated by 122 nucleotides Echvi_0015 and Echvi_0016 are separated by 102 nucleotides Echvi_0016 and Echvi_0017 are separated by 114 nucleotides
Echvi_0014: Echvi_0014 - PAS domain S-box, at 10,993 to 14,430
_0014
Echvi_0015: Echvi_0015 - succinyl-CoA synthetase, alpha subunit, at 14,553 to 15,434
_0015
Echvi_0016: Echvi_0016 - Predicted proline hydroxylase, at 15,537 to 16,145
_0016
Echvi_0017: Echvi_0017 - hypothetical protein, at 16,260 to 17,027
_0017
Position (kb) 14
15
16 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 13.588 kb on - strand, within Echvi_0014 at 13.590 kb on - strand, within Echvi_0014 at 13.590 kb on - strand, within Echvi_0014 at 13.593 kb on + strand, within Echvi_0014 at 13.594 kb on - strand, within Echvi_0014 at 13.595 kb on + strand, within Echvi_0014 at 13.619 kb on + strand, within Echvi_0014 at 13.693 kb on + strand, within Echvi_0014 at 13.693 kb on + strand, within Echvi_0014 at 13.714 kb on + strand, within Echvi_0014 at 13.719 kb on + strand, within Echvi_0014 at 13.737 kb on - strand, within Echvi_0014 at 13.776 kb on + strand, within Echvi_0014 at 13.777 kb on - strand, within Echvi_0014 at 13.778 kb on + strand, within Echvi_0014 at 13.793 kb on - strand, within Echvi_0014 at 13.907 kb on - strand, within Echvi_0014 at 13.940 kb on + strand, within Echvi_0014 at 13.941 kb on - strand, within Echvi_0014 at 13.944 kb on + strand, within Echvi_0014 at 13.945 kb on - strand, within Echvi_0014 at 13.945 kb on - strand, within Echvi_0014 at 13.945 kb on - strand, within Echvi_0014 at 13.945 kb on - strand, within Echvi_0014 at 13.947 kb on - strand, within Echvi_0014 at 13.947 kb on - strand, within Echvi_0014 at 14.008 kb on + strand, within Echvi_0014 at 14.009 kb on - strand, within Echvi_0014 at 14.016 kb on + strand, within Echvi_0014 at 14.039 kb on + strand, within Echvi_0014 at 14.039 kb on + strand, within Echvi_0014 at 14.039 kb on + strand, within Echvi_0014 at 14.040 kb on - strand, within Echvi_0014 at 14.041 kb on + strand, within Echvi_0014 at 14.041 kb on + strand, within Echvi_0014 at 14.074 kb on - strand, within Echvi_0014 at 14.094 kb on - strand at 14.113 kb on + strand at 14.114 kb on - strand at 14.121 kb on + strand at 14.121 kb on + strand at 14.121 kb on + strand at 14.121 kb on + strand at 14.121 kb on + strand at 14.121 kb on + strand at 14.121 kb on + strand at 14.121 kb on + strand at 14.122 kb on - strand at 14.122 kb on - strand at 14.122 kb on - strand at 14.122 kb on - strand at 14.122 kb on - strand at 14.122 kb on - strand at 14.122 kb on - strand at 14.123 kb on + strand at 14.123 kb on + strand at 14.123 kb on + strand at 14.123 kb on + strand at 14.123 kb on + strand at 14.124 kb on - strand at 14.124 kb on - strand at 14.124 kb on - strand at 14.125 kb on + strand at 14.126 kb on - strand at 14.150 kb on + strand at 14.176 kb on + strand at 14.176 kb on + strand at 14.176 kb on + strand at 14.177 kb on - strand at 14.177 kb on - strand at 14.183 kb on - strand at 14.200 kb on + strand at 14.201 kb on - strand at 14.206 kb on - strand at 14.231 kb on + strand at 14.232 kb on - strand at 14.232 kb on - strand at 14.232 kb on - strand at 14.272 kb on - strand at 14.272 kb on - strand at 14.272 kb on - strand at 14.274 kb on + strand at 14.275 kb on - strand at 14.275 kb on - strand at 14.296 kb on - strand at 14.296 kb on - strand at 14.307 kb on + strand at 14.308 kb on - strand at 14.311 kb on - strand at 14.398 kb on + strand at 14.399 kb on - strand at 14.430 kb on + strand at 14.430 kb on + strand at 14.441 kb on + strand at 14.467 kb on + strand at 14.503 kb on + strand at 14.580 kb on - strand at 14.660 kb on - strand, within Echvi_0015 at 14.690 kb on + strand, within Echvi_0015 at 14.690 kb on + strand, within Echvi_0015 at 14.841 kb on - strand, within Echvi_0015 at 14.884 kb on - strand, within Echvi_0015 at 14.884 kb on - strand, within Echvi_0015 at 14.884 kb on - strand, within Echvi_0015 at 15.028 kb on - strand, within Echvi_0015 at 15.254 kb on + strand, within Echvi_0015 at 15.432 kb on + strand at 15.437 kb on - strand at 15.500 kb on + strand at 15.503 kb on - strand at 15.531 kb on + strand at 15.531 kb on + strand at 15.532 kb on - strand at 15.532 kb on - strand at 15.532 kb on - strand at 15.621 kb on + strand, within Echvi_0016 at 15.692 kb on + strand, within Echvi_0016 at 15.693 kb on - strand, within Echvi_0016 at 15.694 kb on + strand, within Echvi_0016 at 15.695 kb on - strand, within Echvi_0016 at 15.695 kb on - strand, within Echvi_0016 at 15.695 kb on - strand, within Echvi_0016 at 15.695 kb on - strand, within Echvi_0016 at 15.739 kb on - strand, within Echvi_0016 at 15.739 kb on - strand, within Echvi_0016 at 15.739 kb on - strand, within Echvi_0016 at 15.739 kb on - strand, within Echvi_0016 at 15.744 kb on + strand, within Echvi_0016 at 15.820 kb on + strand, within Echvi_0016 at 15.820 kb on + strand, within Echvi_0016 at 15.820 kb on + strand, within Echvi_0016 at 15.841 kb on + strand, within Echvi_0016 at 15.842 kb on - strand, within Echvi_0016 at 15.978 kb on - strand, within Echvi_0016 at 15.978 kb on - strand, within Echvi_0016 at 16.016 kb on + strand, within Echvi_0016 at 16.056 kb on + strand, within Echvi_0016 at 16.083 kb on - strand, within Echvi_0016 at 16.114 kb on + strand at 16.171 kb on - strand at 16.221 kb on - strand at 16.265 kb on - strand at 16.265 kb on - strand at 16.268 kb on + strand at 16.283 kb on - strand at 16.283 kb on - strand at 16.283 kb on - strand at 16.373 kb on + strand, within Echvi_0017 at 16.373 kb on + strand, within Echvi_0017 at 16.380 kb on - strand, within Echvi_0017 at 16.389 kb on - strand, within Echvi_0017 at 16.389 kb on - strand, within Echvi_0017
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.8 mM remove 13,588 - Echvi_0014 0.75 -0.5 13,590 - Echvi_0014 0.76 +0.5 13,590 - Echvi_0014 0.76 +1.5 13,593 + Echvi_0014 0.76 -2.1 13,594 - Echvi_0014 0.76 -0.5 13,595 + Echvi_0014 0.76 -0.4 13,619 + Echvi_0014 0.76 -0.0 13,693 + Echvi_0014 0.79 +0.3 13,693 + Echvi_0014 0.79 +0.7 13,714 + Echvi_0014 0.79 +0.3 13,719 + Echvi_0014 0.79 -2.0 13,737 - Echvi_0014 0.80 -0.7 13,776 + Echvi_0014 0.81 -0.6 13,777 - Echvi_0014 0.81 -0.8 13,778 + Echvi_0014 0.81 -0.1 13,793 - Echvi_0014 0.81 -0.9 13,907 - Echvi_0014 0.85 +0.2 13,940 + Echvi_0014 0.86 +1.0 13,941 - Echvi_0014 0.86 -0.6 13,944 + Echvi_0014 0.86 -0.8 13,945 - Echvi_0014 0.86 -0.6 13,945 - Echvi_0014 0.86 +0.1 13,945 - Echvi_0014 0.86 -0.8 13,945 - Echvi_0014 0.86 -2.3 13,947 - Echvi_0014 0.86 -0.1 13,947 - Echvi_0014 0.86 -1.2 14,008 + Echvi_0014 0.88 -0.3 14,009 - Echvi_0014 0.88 -1.7 14,016 + Echvi_0014 0.88 -0.9 14,039 + Echvi_0014 0.89 -0.3 14,039 + Echvi_0014 0.89 -0.5 14,039 + Echvi_0014 0.89 -1.4 14,040 - Echvi_0014 0.89 -0.0 14,041 + Echvi_0014 0.89 +0.3 14,041 + Echvi_0014 0.89 -0.1 14,074 - Echvi_0014 0.90 -0.8 14,094 - -0.6 14,113 + -1.5 14,114 - -1.3 14,121 + -0.9 14,121 + +0.1 14,121 + -0.3 14,121 + +0.2 14,121 + +0.8 14,121 + -0.3 14,121 + -0.1 14,121 + -0.7 14,122 - -0.7 14,122 - -0.2 14,122 - -0.7 14,122 - -0.9 14,122 - -0.1 14,122 - +0.1 14,122 - +0.2 14,123 + -0.6 14,123 + -0.1 14,123 + +0.2 14,123 + -1.3 14,123 + -0.2 14,124 - +0.0 14,124 - -0.1 14,124 - -0.1 14,125 + +0.5 14,126 - -0.2 14,150 + +0.1 14,176 + +0.5 14,176 + +0.7 14,176 + -2.5 14,177 - +0.3 14,177 - -1.5 14,183 - -0.3 14,200 + +0.0 14,201 - -0.0 14,206 - -0.6 14,231 + +0.3 14,232 - +1.7 14,232 - -0.6 14,232 - +0.2 14,272 - -0.9 14,272 - -0.5 14,272 - -0.8 14,274 + +1.2 14,275 - -1.1 14,275 - -2.1 14,296 - +0.0 14,296 - -0.7 14,307 + -1.3 14,308 - -1.8 14,311 - -1.0 14,398 + -0.8 14,399 - +1.2 14,430 + -0.4 14,430 + +0.8 14,441 + -0.1 14,467 + -0.3 14,503 + +0.8 14,580 - -1.3 14,660 - Echvi_0015 0.12 -0.5 14,690 + Echvi_0015 0.16 -1.1 14,690 + Echvi_0015 0.16 -0.3 14,841 - Echvi_0015 0.33 -2.8 14,884 - Echvi_0015 0.38 +0.4 14,884 - Echvi_0015 0.38 -1.2 14,884 - Echvi_0015 0.38 -0.8 15,028 - Echvi_0015 0.54 -0.1 15,254 + Echvi_0015 0.79 -0.0 15,432 + +1.1 15,437 - -0.9 15,500 + -0.1 15,503 - +0.2 15,531 + +1.1 15,531 + +1.4 15,532 - -0.1 15,532 - +2.0 15,532 - -1.0 15,621 + Echvi_0016 0.14 -1.6 15,692 + Echvi_0016 0.25 +0.3 15,693 - Echvi_0016 0.26 -0.5 15,694 + Echvi_0016 0.26 +1.1 15,695 - Echvi_0016 0.26 +0.0 15,695 - Echvi_0016 0.26 +1.1 15,695 - Echvi_0016 0.26 -0.3 15,695 - Echvi_0016 0.26 +0.8 15,739 - Echvi_0016 0.33 -1.1 15,739 - Echvi_0016 0.33 -0.3 15,739 - Echvi_0016 0.33 -2.3 15,739 - Echvi_0016 0.33 +0.4 15,744 + Echvi_0016 0.34 +0.3 15,820 + Echvi_0016 0.46 -0.2 15,820 + Echvi_0016 0.46 -0.6 15,820 + Echvi_0016 0.46 +0.3 15,841 + Echvi_0016 0.50 -0.8 15,842 - Echvi_0016 0.50 -0.8 15,978 - Echvi_0016 0.72 -1.0 15,978 - Echvi_0016 0.72 +0.4 16,016 + Echvi_0016 0.79 -0.1 16,056 + Echvi_0016 0.85 +0.3 16,083 - Echvi_0016 0.90 -0.4 16,114 + +0.9 16,171 - +0.1 16,221 - -0.9 16,265 - -0.7 16,265 - -1.0 16,268 + -0.5 16,283 - +0.7 16,283 - +1.1 16,283 - +0.1 16,373 + Echvi_0017 0.15 -0.4 16,373 + Echvi_0017 0.15 +0.4 16,380 - Echvi_0017 0.16 +0.7 16,389 - Echvi_0017 0.17 -0.1 16,389 - Echvi_0017 0.17 +1.8
Or see this region's nucleotide sequence