Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03922

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00469 and CCNA_03922 are separated by 343 nucleotidesCCNA_03922 and CCNA_00470 overlap by 71 nucleotides CCNA_00469: CCNA_00469 - GT1-family glycosyltransferase, at 482,231 to 483,454 _00469 CCNA_03922: CCNA_03922 - hypothetical protein, at 483,798 to 484,859 _03922 CCNA_00470: CCNA_00470 - O-antigen polymerase, at 484,789 to 486,132 _00470 Position (kb) 483 484 485Strain fitness (log2 ratio) -1 0 1 2at 483.469 kb on - strandat 483.495 kb on - strandat 483.518 kb on - strandat 483.581 kb on + strandat 483.630 kb on - strandat 484.901 kb on - strandat 484.934 kb on + strand, within CCNA_00470at 484.936 kb on + strand, within CCNA_00470at 484.937 kb on - strand, within CCNA_00470at 484.965 kb on + strand, within CCNA_00470at 484.985 kb on - strand, within CCNA_00470at 484.985 kb on - strand, within CCNA_00470at 485.047 kb on + strand, within CCNA_00470at 485.060 kb on - strand, within CCNA_00470at 485.096 kb on + strand, within CCNA_00470at 485.116 kb on - strand, within CCNA_00470at 485.147 kb on - strand, within CCNA_00470at 485.166 kb on - strand, within CCNA_00470at 485.258 kb on - strand, within CCNA_00470at 485.370 kb on + strand, within CCNA_00470at 485.401 kb on + strand, within CCNA_00470at 485.406 kb on + strand, within CCNA_00470at 485.408 kb on + strand, within CCNA_00470at 485.422 kb on + strand, within CCNA_00470at 485.422 kb on + strand, within CCNA_00470at 485.422 kb on + strand, within CCNA_00470at 485.423 kb on + strand, within CCNA_00470at 485.457 kb on + strand, within CCNA_00470at 485.469 kb on + strand, within CCNA_00470at 485.470 kb on - strand, within CCNA_00470at 485.496 kb on - strand, within CCNA_00470at 485.504 kb on + strand, within CCNA_00470at 485.504 kb on + strand, within CCNA_00470at 485.504 kb on + strand, within CCNA_00470at 485.506 kb on + strand, within CCNA_00470at 485.506 kb on + strand, within CCNA_00470at 485.512 kb on - strand, within CCNA_00470at 485.512 kb on - strand, within CCNA_00470at 485.512 kb on - strand, within CCNA_00470at 485.514 kb on - strand, within CCNA_00470at 485.514 kb on - strand, within CCNA_00470at 485.519 kb on + strand, within CCNA_00470at 485.519 kb on + strand, within CCNA_00470at 485.522 kb on - strand, within CCNA_00470at 485.527 kb on - strand, within CCNA_00470at 485.553 kb on + strand, within CCNA_00470at 485.553 kb on + strand, within CCNA_00470at 485.580 kb on - strand, within CCNA_00470at 485.626 kb on + strand, within CCNA_00470at 485.673 kb on - strand, within CCNA_00470at 485.708 kb on + strand, within CCNA_00470at 485.803 kb on - strand, within CCNA_00470at 485.821 kb on - strand, within CCNA_00470at 485.824 kb on - strand, within CCNA_00470at 485.840 kb on + strand, within CCNA_00470

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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483,469 - -0.2
483,495 - -0.4
483,518 - -0.0
483,581 + -0.3
483,630 - +0.8
484,901 - -0.5
484,934 + CCNA_00470 0.11 -0.1
484,936 + CCNA_00470 0.11 -1.1
484,937 - CCNA_00470 0.11 +0.2
484,965 + CCNA_00470 0.13 +0.3
484,985 - CCNA_00470 0.15 +0.4
484,985 - CCNA_00470 0.15 +0.6
485,047 + CCNA_00470 0.19 -0.7
485,060 - CCNA_00470 0.20 -0.8
485,096 + CCNA_00470 0.23 -0.4
485,116 - CCNA_00470 0.24 +1.7
485,147 - CCNA_00470 0.27 +0.2
485,166 - CCNA_00470 0.28 -0.4
485,258 - CCNA_00470 0.35 +0.0
485,370 + CCNA_00470 0.43 +0.4
485,401 + CCNA_00470 0.46 +0.5
485,406 + CCNA_00470 0.46 +0.3
485,408 + CCNA_00470 0.46 +0.2
485,422 + CCNA_00470 0.47 +0.7
485,422 + CCNA_00470 0.47 -0.1
485,422 + CCNA_00470 0.47 +0.2
485,423 + CCNA_00470 0.47 -0.1
485,457 + CCNA_00470 0.50 -0.2
485,469 + CCNA_00470 0.51 +0.2
485,470 - CCNA_00470 0.51 +0.1
485,496 - CCNA_00470 0.53 +0.2
485,504 + CCNA_00470 0.53 +0.5
485,504 + CCNA_00470 0.53 +1.3
485,504 + CCNA_00470 0.53 +2.7
485,506 + CCNA_00470 0.53 +1.1
485,506 + CCNA_00470 0.53 +1.4
485,512 - CCNA_00470 0.54 +1.9
485,512 - CCNA_00470 0.54 +1.1
485,512 - CCNA_00470 0.54 +1.9
485,514 - CCNA_00470 0.54 +1.0
485,514 - CCNA_00470 0.54 +0.4
485,519 + CCNA_00470 0.54 +0.8
485,519 + CCNA_00470 0.54 -0.3
485,522 - CCNA_00470 0.55 -0.2
485,527 - CCNA_00470 0.55 +1.0
485,553 + CCNA_00470 0.57 +0.5
485,553 + CCNA_00470 0.57 -0.1
485,580 - CCNA_00470 0.59 +0.5
485,626 + CCNA_00470 0.62 -0.7
485,673 - CCNA_00470 0.66 -0.2
485,708 + CCNA_00470 0.68 -0.5
485,803 - CCNA_00470 0.75 -0.1
485,821 - CCNA_00470 0.77 +0.2
485,824 - CCNA_00470 0.77 +0.3
485,840 + CCNA_00470 0.78 -1.1

Or see this region's nucleotide sequence