Experiment: PYE with Dimethyl Sulfoxide 0.4 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00700 and CCNA_00701 are separated by 586 nucleotides CCNA_00701 and CCNA_03888 are separated by 144 nucleotides CCNA_03888 and CCNA_00703 are separated by 102 nucleotides CCNA_00703 and CCNA_00704 are separated by 42 nucleotides CCNA_00704 and CCNA_00705 are separated by 151 nucleotides
CCNA_00700: CCNA_00700 - TonB-dependent receptor, at 759,099 to 761,024
_00700
CCNA_00701: CCNA_00701 - cold shock protein CspB, at 761,611 to 761,820
_00701
CCNA_03888: CCNA_03888 - hypothetical protein, at 761,965 to 762,324
_03888
CCNA_00703: CCNA_00703 - hypothetical protein, at 762,427 to 762,633
_00703
CCNA_00704: CCNA_00704 - hypothetical protein, at 762,676 to 762,873
_00704
CCNA_00705: CCNA_00705 - hypothetical protein, at 763,025 to 763,315
_00705
Position (kb)
761
762
763 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 761.028 kb on - strand at 761.033 kb on - strand at 761.042 kb on + strand at 761.043 kb on + strand at 761.050 kb on - strand at 761.050 kb on - strand at 761.068 kb on + strand at 761.076 kb on - strand at 761.076 kb on - strand at 761.076 kb on - strand at 761.076 kb on - strand at 761.076 kb on - strand at 761.081 kb on + strand at 761.143 kb on - strand at 761.146 kb on + strand at 761.159 kb on - strand at 761.188 kb on + strand at 761.231 kb on + strand at 761.231 kb on - strand at 761.231 kb on - strand at 761.253 kb on - strand at 761.267 kb on + strand at 761.536 kb on + strand at 761.572 kb on + strand at 761.572 kb on + strand at 761.580 kb on - strand at 761.580 kb on - strand at 761.624 kb on + strand at 761.652 kb on - strand, within CCNA_00701 at 761.662 kb on + strand, within CCNA_00701 at 761.717 kb on + strand, within CCNA_00701 at 761.718 kb on - strand, within CCNA_00701 at 761.722 kb on + strand, within CCNA_00701 at 761.722 kb on + strand, within CCNA_00701 at 761.751 kb on - strand, within CCNA_00701 at 761.805 kb on + strand at 761.839 kb on - strand at 761.844 kb on - strand at 761.934 kb on - strand at 761.958 kb on - strand at 761.967 kb on - strand at 761.967 kb on - strand at 761.968 kb on + strand at 762.035 kb on + strand, within CCNA_03888 at 762.084 kb on + strand, within CCNA_03888 at 762.084 kb on + strand, within CCNA_03888 at 762.092 kb on - strand, within CCNA_03888 at 762.092 kb on - strand, within CCNA_03888 at 762.092 kb on - strand, within CCNA_03888 at 762.092 kb on - strand, within CCNA_03888 at 762.092 kb on - strand, within CCNA_03888 at 762.092 kb on - strand, within CCNA_03888 at 762.116 kb on - strand, within CCNA_03888 at 762.157 kb on - strand, within CCNA_03888 at 762.162 kb on - strand, within CCNA_03888 at 762.162 kb on - strand, within CCNA_03888 at 762.171 kb on + strand, within CCNA_03888 at 762.256 kb on + strand, within CCNA_03888 at 762.279 kb on + strand, within CCNA_03888 at 762.281 kb on - strand, within CCNA_03888 at 762.341 kb on + strand at 762.348 kb on + strand at 762.349 kb on - strand at 762.349 kb on - strand at 762.357 kb on + strand at 762.357 kb on + strand at 762.422 kb on - strand at 762.424 kb on + strand at 762.427 kb on - strand at 762.432 kb on - strand at 762.454 kb on + strand, within CCNA_00703 at 762.467 kb on + strand, within CCNA_00703 at 762.475 kb on - strand, within CCNA_00703 at 762.488 kb on - strand, within CCNA_00703 at 762.538 kb on + strand, within CCNA_00703 at 762.543 kb on + strand, within CCNA_00703 at 762.560 kb on + strand, within CCNA_00703 at 762.560 kb on + strand, within CCNA_00703 at 762.570 kb on + strand, within CCNA_00703 at 762.572 kb on + strand, within CCNA_00703 at 762.577 kb on + strand, within CCNA_00703 at 762.577 kb on + strand, within CCNA_00703 at 762.577 kb on + strand, within CCNA_00703 at 762.577 kb on + strand, within CCNA_00703 at 762.582 kb on + strand, within CCNA_00703 at 762.583 kb on + strand, within CCNA_00703 at 762.585 kb on - strand, within CCNA_00703 at 762.585 kb on - strand, within CCNA_00703 at 762.590 kb on - strand, within CCNA_00703 at 762.590 kb on - strand, within CCNA_00703 at 762.650 kb on + strand at 762.696 kb on + strand, within CCNA_00704 at 762.708 kb on + strand, within CCNA_00704 at 762.718 kb on - strand, within CCNA_00704 at 762.745 kb on + strand, within CCNA_00704 at 762.785 kb on - strand, within CCNA_00704 at 762.800 kb on - strand, within CCNA_00704 at 762.819 kb on - strand, within CCNA_00704 at 762.821 kb on + strand, within CCNA_00704 at 762.836 kb on - strand, within CCNA_00704 at 762.856 kb on + strand at 762.894 kb on + strand at 762.894 kb on + strand at 762.894 kb on + strand at 762.906 kb on + strand at 762.914 kb on - strand at 762.914 kb on - strand at 762.916 kb on + strand at 762.916 kb on + strand at 762.916 kb on + strand at 762.924 kb on - strand at 762.951 kb on + strand at 762.951 kb on + strand at 762.959 kb on - strand at 763.018 kb on - strand at 763.055 kb on + strand, within CCNA_00705 at 763.063 kb on - strand, within CCNA_00705 at 763.064 kb on + strand, within CCNA_00705 at 763.087 kb on - strand, within CCNA_00705 at 763.170 kb on - strand, within CCNA_00705 at 763.190 kb on + strand, within CCNA_00705 at 763.245 kb on + strand, within CCNA_00705 at 763.281 kb on - strand, within CCNA_00705 at 763.281 kb on - strand, within CCNA_00705
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 % remove 761,028 - -0.0 761,033 - -0.3 761,042 + -0.6 761,043 + +0.1 761,050 - +0.2 761,050 - +0.3 761,068 + -1.1 761,076 - +0.3 761,076 - +1.2 761,076 - +1.1 761,076 - +1.2 761,076 - +0.4 761,081 + +0.2 761,143 - -0.1 761,146 + -0.0 761,159 - +1.8 761,188 + +1.0 761,231 + -0.2 761,231 - +0.1 761,231 - -0.2 761,253 - +0.2 761,267 + +0.8 761,536 + +0.7 761,572 + -0.2 761,572 + +0.2 761,580 - +0.8 761,580 - -1.4 761,624 + +2.0 761,652 - CCNA_00701 0.20 -0.4 761,662 + CCNA_00701 0.24 +0.4 761,717 + CCNA_00701 0.50 +0.5 761,718 - CCNA_00701 0.51 -0.8 761,722 + CCNA_00701 0.53 -0.6 761,722 + CCNA_00701 0.53 -0.4 761,751 - CCNA_00701 0.67 +0.4 761,805 + +0.2 761,839 - -0.8 761,844 - -1.8 761,934 - +0.5 761,958 - -1.0 761,967 - -1.4 761,967 - +0.4 761,968 + -0.4 762,035 + CCNA_03888 0.19 +0.1 762,084 + CCNA_03888 0.33 -1.8 762,084 + CCNA_03888 0.33 +0.3 762,092 - CCNA_03888 0.35 -0.2 762,092 - CCNA_03888 0.35 -0.3 762,092 - CCNA_03888 0.35 +0.4 762,092 - CCNA_03888 0.35 -0.2 762,092 - CCNA_03888 0.35 -0.2 762,092 - CCNA_03888 0.35 +0.1 762,116 - CCNA_03888 0.42 -0.0 762,157 - CCNA_03888 0.53 -0.3 762,162 - CCNA_03888 0.55 +0.3 762,162 - CCNA_03888 0.55 -0.5 762,171 + CCNA_03888 0.57 +0.5 762,256 + CCNA_03888 0.81 -0.5 762,279 + CCNA_03888 0.87 -0.1 762,281 - CCNA_03888 0.88 +0.1 762,341 + +0.7 762,348 + +0.5 762,349 - +0.0 762,349 - -0.5 762,357 + -0.1 762,357 + +0.0 762,422 - +0.4 762,424 + +1.1 762,427 - -0.4 762,432 - -0.7 762,454 + CCNA_00703 0.13 +0.8 762,467 + CCNA_00703 0.19 -2.2 762,475 - CCNA_00703 0.23 -0.2 762,488 - CCNA_00703 0.29 -0.8 762,538 + CCNA_00703 0.54 -0.0 762,543 + CCNA_00703 0.56 -0.1 762,560 + CCNA_00703 0.64 +1.5 762,560 + CCNA_00703 0.64 -0.3 762,570 + CCNA_00703 0.69 +0.8 762,572 + CCNA_00703 0.70 -0.8 762,577 + CCNA_00703 0.72 +1.0 762,577 + CCNA_00703 0.72 -0.3 762,577 + CCNA_00703 0.72 +0.2 762,577 + CCNA_00703 0.72 -0.4 762,582 + CCNA_00703 0.75 +1.2 762,583 + CCNA_00703 0.75 -0.0 762,585 - CCNA_00703 0.76 -1.8 762,585 - CCNA_00703 0.76 +0.5 762,590 - CCNA_00703 0.79 -0.1 762,590 - CCNA_00703 0.79 +0.1 762,650 + +2.1 762,696 + CCNA_00704 0.10 +0.1 762,708 + CCNA_00704 0.16 -0.4 762,718 - CCNA_00704 0.21 +0.5 762,745 + CCNA_00704 0.35 -1.8 762,785 - CCNA_00704 0.55 +0.1 762,800 - CCNA_00704 0.63 -0.1 762,819 - CCNA_00704 0.72 -1.4 762,821 + CCNA_00704 0.73 +0.5 762,836 - CCNA_00704 0.81 -1.4 762,856 + -0.4 762,894 + +1.0 762,894 + +0.2 762,894 + +0.5 762,906 + +0.4 762,914 - +0.4 762,914 - +0.5 762,916 + +0.5 762,916 + +0.4 762,916 + +0.7 762,924 - -0.8 762,951 + +0.9 762,951 + -0.5 762,959 - +0.7 763,018 - +0.5 763,055 + CCNA_00705 0.10 +0.6 763,063 - CCNA_00705 0.13 +0.2 763,064 + CCNA_00705 0.13 +1.1 763,087 - CCNA_00705 0.21 -0.1 763,170 - CCNA_00705 0.50 +0.3 763,190 + CCNA_00705 0.57 +0.3 763,245 + CCNA_00705 0.76 +1.7 763,281 - CCNA_00705 0.88 +0.3 763,281 - CCNA_00705 0.88 +0.8
Or see this region's nucleotide sequence