Experiment: PYE with Dimethyl Sulfoxide 0.4 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03856 and CCNA_03857 overlap by 1 nucleotides CCNA_03857 and CCNA_03858 are separated by 145 nucleotides CCNA_03858 and CCNA_03859 are separated by 61 nucleotides
CCNA_03856: CCNA_03856 - membrane-bound lytic murein transglycosylase A, at 4,019,778 to 4,020,965
_03856
CCNA_03857: CCNA_03857 - Tim44-like domain protein, at 4,020,965 to 4,021,567
_03857
CCNA_03858: CCNA_03858 - protein translocase subunit secB, at 4,021,713 to 4,022,204
_03858
CCNA_03859: CCNA_03859 - two-component response regulator cenR, at 4,022,266 to 4,022,952
_03859
Position (kb)
4020
4021
4022 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4020.044 kb on - strand, within CCNA_03856 at 4020.080 kb on - strand, within CCNA_03856 at 4020.080 kb on - strand, within CCNA_03856 at 4020.146 kb on + strand, within CCNA_03856 at 4020.156 kb on + strand, within CCNA_03856 at 4020.199 kb on + strand, within CCNA_03856 at 4020.207 kb on - strand, within CCNA_03856 at 4020.252 kb on + strand, within CCNA_03856 at 4020.329 kb on + strand, within CCNA_03856 at 4020.345 kb on + strand, within CCNA_03856 at 4020.345 kb on + strand, within CCNA_03856 at 4020.348 kb on - strand, within CCNA_03856 at 4020.348 kb on - strand, within CCNA_03856 at 4020.394 kb on - strand, within CCNA_03856 at 4020.406 kb on - strand, within CCNA_03856 at 4020.413 kb on - strand, within CCNA_03856 at 4020.435 kb on - strand, within CCNA_03856 at 4020.452 kb on + strand, within CCNA_03856 at 4020.460 kb on + strand, within CCNA_03856 at 4020.468 kb on + strand, within CCNA_03856 at 4020.475 kb on - strand, within CCNA_03856 at 4020.506 kb on - strand, within CCNA_03856 at 4020.539 kb on + strand, within CCNA_03856 at 4020.593 kb on - strand, within CCNA_03856 at 4020.643 kb on + strand, within CCNA_03856 at 4020.650 kb on - strand, within CCNA_03856 at 4020.658 kb on + strand, within CCNA_03856 at 4020.666 kb on - strand, within CCNA_03856 at 4020.757 kb on - strand, within CCNA_03856 at 4020.767 kb on - strand, within CCNA_03856 at 4020.770 kb on + strand, within CCNA_03856 at 4020.857 kb on + strand at 4020.878 kb on + strand at 4020.890 kb on + strand at 4020.895 kb on + strand at 4020.946 kb on + strand at 4020.946 kb on + strand at 4020.946 kb on + strand at 4020.953 kb on - strand at 4020.954 kb on - strand at 4020.954 kb on - strand at 4020.963 kb on + strand at 4021.112 kb on + strand, within CCNA_03857 at 4021.161 kb on + strand, within CCNA_03857 at 4021.202 kb on + strand, within CCNA_03857 at 4021.296 kb on + strand, within CCNA_03857 at 4021.296 kb on + strand, within CCNA_03857 at 4021.304 kb on - strand, within CCNA_03857 at 4021.399 kb on - strand, within CCNA_03857 at 4021.413 kb on - strand, within CCNA_03857 at 4021.452 kb on + strand, within CCNA_03857 at 4021.502 kb on - strand, within CCNA_03857 at 4021.583 kb on + strand at 4021.591 kb on - strand at 4021.591 kb on - strand at 4021.616 kb on + strand at 4021.633 kb on - strand at 4021.650 kb on - strand at 4021.729 kb on + strand at 4021.749 kb on - strand at 4021.751 kb on + strand at 4021.782 kb on - strand, within CCNA_03858 at 4021.910 kb on + strand, within CCNA_03858 at 4021.910 kb on + strand, within CCNA_03858 at 4021.979 kb on + strand, within CCNA_03858 at 4021.987 kb on - strand, within CCNA_03858 at 4021.987 kb on - strand, within CCNA_03858 at 4021.987 kb on - strand, within CCNA_03858 at 4021.987 kb on - strand, within CCNA_03858 at 4022.000 kb on - strand, within CCNA_03858 at 4022.002 kb on - strand, within CCNA_03858 at 4022.143 kb on - strand, within CCNA_03858 at 4022.158 kb on - strand at 4022.158 kb on - strand at 4022.158 kb on - strand at 4022.158 kb on - strand at 4022.169 kb on + strand at 4022.177 kb on - strand at 4022.198 kb on + strand at 4022.264 kb on + strand at 4022.285 kb on - strand at 4022.404 kb on - strand, within CCNA_03859 at 4022.404 kb on - strand, within CCNA_03859 at 4022.420 kb on - strand, within CCNA_03859 at 4022.432 kb on + strand, within CCNA_03859 at 4022.432 kb on + strand, within CCNA_03859 at 4022.440 kb on - strand, within CCNA_03859 at 4022.449 kb on + strand, within CCNA_03859 at 4022.560 kb on - strand, within CCNA_03859 at 4022.560 kb on - strand, within CCNA_03859
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 % remove 4,020,044 - CCNA_03856 0.22 +0.1 4,020,080 - CCNA_03856 0.25 -0.0 4,020,080 - CCNA_03856 0.25 -0.7 4,020,146 + CCNA_03856 0.31 +0.2 4,020,156 + CCNA_03856 0.32 -0.2 4,020,199 + CCNA_03856 0.35 -0.1 4,020,207 - CCNA_03856 0.36 -0.4 4,020,252 + CCNA_03856 0.40 -0.0 4,020,329 + CCNA_03856 0.46 -0.3 4,020,345 + CCNA_03856 0.48 +0.0 4,020,345 + CCNA_03856 0.48 +0.2 4,020,348 - CCNA_03856 0.48 +0.2 4,020,348 - CCNA_03856 0.48 +0.2 4,020,394 - CCNA_03856 0.52 +0.1 4,020,406 - CCNA_03856 0.53 +0.3 4,020,413 - CCNA_03856 0.53 +0.2 4,020,435 - CCNA_03856 0.55 +0.6 4,020,452 + CCNA_03856 0.57 +0.3 4,020,460 + CCNA_03856 0.57 -1.5 4,020,468 + CCNA_03856 0.58 -0.3 4,020,475 - CCNA_03856 0.59 -0.3 4,020,506 - CCNA_03856 0.61 +0.3 4,020,539 + CCNA_03856 0.64 -1.8 4,020,593 - CCNA_03856 0.69 +0.1 4,020,643 + CCNA_03856 0.73 -0.0 4,020,650 - CCNA_03856 0.73 +0.4 4,020,658 + CCNA_03856 0.74 -0.1 4,020,666 - CCNA_03856 0.75 -0.0 4,020,757 - CCNA_03856 0.82 +0.5 4,020,767 - CCNA_03856 0.83 +0.0 4,020,770 + CCNA_03856 0.84 -0.3 4,020,857 + +0.2 4,020,878 + +0.4 4,020,890 + -0.4 4,020,895 + +0.4 4,020,946 + -0.4 4,020,946 + +0.0 4,020,946 + -2.4 4,020,953 - +0.3 4,020,954 - -0.7 4,020,954 - +0.7 4,020,963 + -0.5 4,021,112 + CCNA_03857 0.24 +1.6 4,021,161 + CCNA_03857 0.33 -0.8 4,021,202 + CCNA_03857 0.39 +0.2 4,021,296 + CCNA_03857 0.55 -0.7 4,021,296 + CCNA_03857 0.55 +0.2 4,021,304 - CCNA_03857 0.56 +0.1 4,021,399 - CCNA_03857 0.72 -0.3 4,021,413 - CCNA_03857 0.74 +0.1 4,021,452 + CCNA_03857 0.81 +1.0 4,021,502 - CCNA_03857 0.89 -0.2 4,021,583 + -0.9 4,021,591 - +0.4 4,021,591 - +1.8 4,021,616 + -0.2 4,021,633 - -0.5 4,021,650 - +0.5 4,021,729 + +0.1 4,021,749 - -0.6 4,021,751 + +1.0 4,021,782 - CCNA_03858 0.14 +1.1 4,021,910 + CCNA_03858 0.40 +0.6 4,021,910 + CCNA_03858 0.40 +0.1 4,021,979 + CCNA_03858 0.54 +0.6 4,021,987 - CCNA_03858 0.56 +0.8 4,021,987 - CCNA_03858 0.56 +1.1 4,021,987 - CCNA_03858 0.56 +0.6 4,021,987 - CCNA_03858 0.56 +0.4 4,022,000 - CCNA_03858 0.58 -0.2 4,022,002 - CCNA_03858 0.59 +0.6 4,022,143 - CCNA_03858 0.87 +0.8 4,022,158 - +0.2 4,022,158 - +0.2 4,022,158 - +0.5 4,022,158 - +0.6 4,022,169 + +0.5 4,022,177 - -0.6 4,022,198 + -0.0 4,022,264 + +0.5 4,022,285 - -0.8 4,022,404 - CCNA_03859 0.20 +0.8 4,022,404 - CCNA_03859 0.20 +0.4 4,022,420 - CCNA_03859 0.22 -1.4 4,022,432 + CCNA_03859 0.24 -0.3 4,022,432 + CCNA_03859 0.24 +0.6 4,022,440 - CCNA_03859 0.25 -0.0 4,022,449 + CCNA_03859 0.27 -1.0 4,022,560 - CCNA_03859 0.43 -0.4 4,022,560 - CCNA_03859 0.43 +0.6
Or see this region's nucleotide sequence