Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03824

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03822 and CCNA_03823 are separated by 82 nucleotidesCCNA_03823 and CCNA_03824 are separated by 4 nucleotidesCCNA_03824 and CCNA_03825 are separated by 6 nucleotidesCCNA_03825 and CCNA_03826 overlap by 4 nucleotides CCNA_03822: CCNA_03822 - formamidopyrimidine-DNA glycosylase, at 3,988,188 to 3,989,051 _03822 CCNA_03823: CCNA_03823 - ubiquinone/menaquinone biosynthesis methyltransferase UbiE, at 3,989,134 to 3,989,892 _03823 CCNA_03824: CCNA_03824 - 2-polyprenylphenol 6-hydroxylase accessory protein UbiB, at 3,989,897 to 3,991,405 _03824 CCNA_03825: CCNA_03825 - hypothetical protein, at 3,991,412 to 3,991,774 _03825 CCNA_03826: CCNA_03826 - hypothetical protein, at 3,991,771 to 3,992,325 _03826 Position (kb) 3989 3990 3991 3992Strain fitness (log2 ratio) -2 -1 0 1 2at 3988.933 kb on - strand, within CCNA_03822at 3988.963 kb on - strand, within CCNA_03822at 3988.963 kb on - strand, within CCNA_03822at 3988.980 kb on + strandat 3988.980 kb on + strandat 3989.006 kb on + strandat 3989.026 kb on + strandat 3989.106 kb on + strandat 3989.114 kb on - strandat 3989.129 kb on - strandat 3989.877 kb on + strandat 3989.880 kb on - strandat 3989.880 kb on - strandat 3989.880 kb on - strandat 3989.887 kb on + strandat 3989.887 kb on + strandat 3989.887 kb on + strandat 3989.895 kb on - strandat 3989.895 kb on - strandat 3989.895 kb on - strandat 3989.912 kb on - strandat 3989.920 kb on - strandat 3989.947 kb on + strandat 3990.092 kb on + strand, within CCNA_03824at 3990.108 kb on + strand, within CCNA_03824at 3990.310 kb on + strand, within CCNA_03824at 3990.326 kb on - strand, within CCNA_03824at 3990.542 kb on - strand, within CCNA_03824at 3990.544 kb on + strand, within CCNA_03824at 3990.552 kb on - strand, within CCNA_03824at 3990.625 kb on + strand, within CCNA_03824at 3990.628 kb on - strand, within CCNA_03824at 3990.633 kb on - strand, within CCNA_03824at 3990.648 kb on + strand, within CCNA_03824at 3990.652 kb on - strand, within CCNA_03824at 3990.670 kb on - strand, within CCNA_03824at 3990.926 kb on + strand, within CCNA_03824at 3990.946 kb on + strand, within CCNA_03824at 3990.968 kb on + strand, within CCNA_03824at 3990.971 kb on - strand, within CCNA_03824at 3990.971 kb on - strand, within CCNA_03824at 3991.000 kb on - strand, within CCNA_03824at 3991.205 kb on - strand, within CCNA_03824at 3991.223 kb on + strand, within CCNA_03824at 3991.331 kb on + strandat 3991.344 kb on - strandat 3991.373 kb on + strandat 3991.390 kb on + strandat 3991.394 kb on - strandat 3991.464 kb on + strand, within CCNA_03825at 3991.507 kb on + strand, within CCNA_03825at 3991.508 kb on + strand, within CCNA_03825at 3991.515 kb on + strand, within CCNA_03825at 3991.515 kb on + strand, within CCNA_03825at 3991.523 kb on - strand, within CCNA_03825at 3991.530 kb on - strand, within CCNA_03825at 3991.567 kb on + strand, within CCNA_03825at 3991.575 kb on - strand, within CCNA_03825at 3991.634 kb on + strand, within CCNA_03825at 3991.664 kb on - strand, within CCNA_03825at 3991.698 kb on - strand, within CCNA_03825at 3991.711 kb on + strand, within CCNA_03825at 3991.711 kb on + strand, within CCNA_03825at 3991.711 kb on + strand, within CCNA_03825at 3991.711 kb on + strand, within CCNA_03825at 3991.711 kb on + strand, within CCNA_03825at 3991.719 kb on - strand, within CCNA_03825at 3991.719 kb on - strand, within CCNA_03825at 3991.719 kb on - strand, within CCNA_03825at 3991.719 kb on - strand, within CCNA_03825at 3991.724 kb on + strand, within CCNA_03825at 3991.768 kb on + strandat 3991.776 kb on - strandat 3991.839 kb on + strand, within CCNA_03826at 3991.858 kb on + strand, within CCNA_03826at 3991.858 kb on + strand, within CCNA_03826at 3991.861 kb on - strand, within CCNA_03826at 3991.861 kb on - strand, within CCNA_03826at 3991.863 kb on + strand, within CCNA_03826at 3991.866 kb on - strand, within CCNA_03826at 3991.866 kb on - strand, within CCNA_03826at 3991.871 kb on - strand, within CCNA_03826at 3991.936 kb on + strand, within CCNA_03826at 3991.941 kb on + strand, within CCNA_03826at 3991.957 kb on - strand, within CCNA_03826at 3991.986 kb on + strand, within CCNA_03826at 3992.094 kb on + strand, within CCNA_03826at 3992.112 kb on + strand, within CCNA_03826at 3992.119 kb on - strand, within CCNA_03826at 3992.132 kb on + strand, within CCNA_03826at 3992.299 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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3,988,933 - CCNA_03822 0.86 -0.1
3,988,963 - CCNA_03822 0.90 +1.8
3,988,963 - CCNA_03822 0.90 -1.0
3,988,980 + -0.1
3,988,980 + -0.3
3,989,006 + +0.3
3,989,026 + -0.0
3,989,106 + -0.1
3,989,114 - -0.2
3,989,129 - -0.4
3,989,877 + -0.2
3,989,880 - +0.8
3,989,880 - +0.2
3,989,880 - -0.3
3,989,887 + -0.2
3,989,887 + -0.2
3,989,887 + +0.2
3,989,895 - +0.0
3,989,895 - -0.0
3,989,895 - -0.7
3,989,912 - -0.1
3,989,920 - -0.4
3,989,947 + -0.9
3,990,092 + CCNA_03824 0.13 +0.1
3,990,108 + CCNA_03824 0.14 -0.5
3,990,310 + CCNA_03824 0.27 -1.0
3,990,326 - CCNA_03824 0.28 -0.8
3,990,542 - CCNA_03824 0.43 +0.2
3,990,544 + CCNA_03824 0.43 -1.6
3,990,552 - CCNA_03824 0.43 +0.4
3,990,625 + CCNA_03824 0.48 -2.1
3,990,628 - CCNA_03824 0.48 -1.4
3,990,633 - CCNA_03824 0.49 -0.9
3,990,648 + CCNA_03824 0.50 +0.2
3,990,652 - CCNA_03824 0.50 +0.1
3,990,670 - CCNA_03824 0.51 -0.5
3,990,926 + CCNA_03824 0.68 -0.3
3,990,946 + CCNA_03824 0.70 -0.8
3,990,968 + CCNA_03824 0.71 +0.1
3,990,971 - CCNA_03824 0.71 -0.9
3,990,971 - CCNA_03824 0.71 +1.2
3,991,000 - CCNA_03824 0.73 +0.2
3,991,205 - CCNA_03824 0.87 -0.2
3,991,223 + CCNA_03824 0.88 +0.7
3,991,331 + +0.4
3,991,344 - -0.1
3,991,373 + -0.2
3,991,390 + -0.4
3,991,394 - -0.3
3,991,464 + CCNA_03825 0.14 +0.1
3,991,507 + CCNA_03825 0.26 +0.4
3,991,508 + CCNA_03825 0.26 +0.5
3,991,515 + CCNA_03825 0.28 +0.1
3,991,515 + CCNA_03825 0.28 +0.1
3,991,523 - CCNA_03825 0.31 +0.2
3,991,530 - CCNA_03825 0.33 -1.3
3,991,567 + CCNA_03825 0.43 -0.6
3,991,575 - CCNA_03825 0.45 +0.2
3,991,634 + CCNA_03825 0.61 -0.2
3,991,664 - CCNA_03825 0.69 -0.4
3,991,698 - CCNA_03825 0.79 -0.3
3,991,711 + CCNA_03825 0.82 -0.9
3,991,711 + CCNA_03825 0.82 -0.7
3,991,711 + CCNA_03825 0.82 +0.1
3,991,711 + CCNA_03825 0.82 -0.5
3,991,711 + CCNA_03825 0.82 -0.8
3,991,719 - CCNA_03825 0.85 -0.7
3,991,719 - CCNA_03825 0.85 -0.6
3,991,719 - CCNA_03825 0.85 -0.2
3,991,719 - CCNA_03825 0.85 +0.4
3,991,724 + CCNA_03825 0.86 +0.6
3,991,768 + +0.6
3,991,776 - +0.1
3,991,839 + CCNA_03826 0.12 +0.1
3,991,858 + CCNA_03826 0.16 -1.3
3,991,858 + CCNA_03826 0.16 +0.1
3,991,861 - CCNA_03826 0.16 +0.8
3,991,861 - CCNA_03826 0.16 +0.2
3,991,863 + CCNA_03826 0.17 -0.8
3,991,866 - CCNA_03826 0.17 +0.1
3,991,866 - CCNA_03826 0.17 -1.4
3,991,871 - CCNA_03826 0.18 +0.1
3,991,936 + CCNA_03826 0.30 -1.4
3,991,941 + CCNA_03826 0.31 +0.1
3,991,957 - CCNA_03826 0.34 -0.6
3,991,986 + CCNA_03826 0.39 +0.7
3,992,094 + CCNA_03826 0.58 -0.7
3,992,112 + CCNA_03826 0.61 -0.6
3,992,119 - CCNA_03826 0.63 -0.8
3,992,132 + CCNA_03826 0.65 -1.4
3,992,299 + +0.6

Or see this region's nucleotide sequence