Experiment: PYE with Dimethyl Sulfoxide 0.4 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03557 and CCNA_03558 are separated by 207 nucleotides CCNA_03558 and CCNA_03559 overlap by 1 nucleotides CCNA_03559 and CCNA_03560 overlap by 1 nucleotides CCNA_03560 and CCNA_03561 are separated by 47 nucleotides CCNA_03561 and CCNA_03562 are separated by 34 nucleotides
CCNA_03557: CCNA_03557 - hypothetical protein, at 3,713,085 to 3,713,810
_03557
CCNA_03558: CCNA_03558 - ATP synthase epsilon chain, at 3,714,018 to 3,714,278
_03558
CCNA_03559: CCNA_03559 - hypothetical protein, at 3,714,278 to 3,714,529
_03559
CCNA_03560: CCNA_03560 - ATP synthase beta chain, at 3,714,529 to 3,716,148
_03560
CCNA_03561: CCNA_03561 - ATP synthase gamma chain, at 3,716,196 to 3,717,071
_03561
CCNA_03562: CCNA_03562 - ATP synthase alpha chain, at 3,717,106 to 3,718,638
_03562
Position (kb)
3714
3715
3716
3717 Strain fitness (log2 ratio)
-1
0
1 at 3713.547 kb on - strand, within CCNA_03557 at 3713.547 kb on - strand, within CCNA_03557 at 3713.547 kb on - strand, within CCNA_03557 at 3713.578 kb on + strand, within CCNA_03557 at 3713.701 kb on + strand, within CCNA_03557 at 3713.706 kb on + strand, within CCNA_03557 at 3713.869 kb on - strand at 3713.881 kb on + strand at 3713.991 kb on - strand at 3713.991 kb on - strand at 3714.016 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 % remove 3,713,547 - CCNA_03557 0.64 +0.3 3,713,547 - CCNA_03557 0.64 +0.5 3,713,547 - CCNA_03557 0.64 +0.0 3,713,578 + CCNA_03557 0.68 +0.2 3,713,701 + CCNA_03557 0.85 -0.9 3,713,706 + CCNA_03557 0.86 -0.5 3,713,869 - -0.1 3,713,881 + +0.1 3,713,991 - -0.3 3,713,991 - -0.1 3,714,016 + -0.4
Or see this region's nucleotide sequence