Experiment: PYE with Dimethyl Sulfoxide 0.4 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03507 and CCNA_03508 are separated by 34 nucleotides CCNA_03508 and CCNA_03509 are separated by 17 nucleotides
CCNA_03507: CCNA_03507 - GGDEF/EAL phosphodiesterase PdeA, at 3,664,746 to 3,666,413
_03507
CCNA_03508: CCNA_03508 - ribosomal-protein-S5-alanine acetyltransferase, at 3,666,448 to 3,667,026
_03508
CCNA_03509: CCNA_03509 - zinc protease, at 3,667,044 to 3,668,315
_03509
Position (kb)
3666
3667
3668 Strain fitness (log2 ratio)
-2
-1
0
1 at 3665.457 kb on - strand, within CCNA_03507 at 3665.486 kb on + strand, within CCNA_03507 at 3665.494 kb on - strand, within CCNA_03507 at 3665.511 kb on - strand, within CCNA_03507 at 3665.521 kb on - strand, within CCNA_03507 at 3665.531 kb on + strand, within CCNA_03507 at 3665.651 kb on + strand, within CCNA_03507 at 3665.651 kb on - strand, within CCNA_03507 at 3665.685 kb on + strand, within CCNA_03507 at 3665.755 kb on + strand, within CCNA_03507 at 3665.769 kb on + strand, within CCNA_03507 at 3665.777 kb on + strand, within CCNA_03507 at 3665.785 kb on - strand, within CCNA_03507 at 3665.785 kb on - strand, within CCNA_03507 at 3665.829 kb on + strand, within CCNA_03507 at 3665.837 kb on - strand, within CCNA_03507 at 3665.874 kb on - strand, within CCNA_03507 at 3665.907 kb on + strand, within CCNA_03507 at 3665.943 kb on - strand, within CCNA_03507 at 3665.958 kb on + strand, within CCNA_03507 at 3665.965 kb on + strand, within CCNA_03507 at 3665.968 kb on - strand, within CCNA_03507 at 3665.973 kb on - strand, within CCNA_03507 at 3666.015 kb on + strand, within CCNA_03507 at 3666.015 kb on + strand, within CCNA_03507 at 3666.098 kb on + strand, within CCNA_03507 at 3666.106 kb on - strand, within CCNA_03507 at 3666.124 kb on - strand, within CCNA_03507 at 3666.153 kb on + strand, within CCNA_03507 at 3666.183 kb on + strand, within CCNA_03507 at 3666.193 kb on + strand, within CCNA_03507 at 3666.201 kb on - strand, within CCNA_03507 at 3666.205 kb on + strand, within CCNA_03507 at 3666.272 kb on + strand at 3666.294 kb on + strand at 3666.302 kb on - strand at 3666.367 kb on - strand at 3666.367 kb on - strand at 3666.372 kb on - strand at 3666.390 kb on + strand at 3666.408 kb on + strand at 3666.409 kb on + strand at 3666.518 kb on + strand, within CCNA_03508 at 3666.609 kb on - strand, within CCNA_03508 at 3666.609 kb on - strand, within CCNA_03508 at 3666.631 kb on + strand, within CCNA_03508 at 3666.671 kb on + strand, within CCNA_03508 at 3666.680 kb on - strand, within CCNA_03508 at 3666.741 kb on + strand, within CCNA_03508 at 3666.741 kb on + strand, within CCNA_03508 at 3666.913 kb on + strand, within CCNA_03508 at 3666.937 kb on + strand, within CCNA_03508 at 3666.940 kb on - strand, within CCNA_03508 at 3666.954 kb on + strand, within CCNA_03508 at 3666.966 kb on - strand, within CCNA_03508 at 3667.051 kb on + strand at 3667.059 kb on - strand at 3667.076 kb on - strand at 3667.162 kb on - strand at 3667.172 kb on - strand, within CCNA_03509 at 3667.241 kb on - strand, within CCNA_03509 at 3667.250 kb on + strand, within CCNA_03509 at 3667.250 kb on + strand, within CCNA_03509 at 3667.251 kb on - strand, within CCNA_03509 at 3667.258 kb on - strand, within CCNA_03509 at 3667.292 kb on - strand, within CCNA_03509 at 3667.317 kb on + strand, within CCNA_03509 at 3667.330 kb on + strand, within CCNA_03509 at 3667.366 kb on + strand, within CCNA_03509 at 3667.366 kb on + strand, within CCNA_03509 at 3667.371 kb on + strand, within CCNA_03509 at 3667.371 kb on + strand, within CCNA_03509 at 3667.374 kb on - strand, within CCNA_03509 at 3667.374 kb on - strand, within CCNA_03509 at 3667.379 kb on - strand, within CCNA_03509 at 3667.438 kb on + strand, within CCNA_03509 at 3667.446 kb on - strand, within CCNA_03509 at 3667.496 kb on + strand, within CCNA_03509 at 3667.496 kb on + strand, within CCNA_03509 at 3667.496 kb on + strand, within CCNA_03509 at 3667.542 kb on + strand, within CCNA_03509 at 3667.604 kb on - strand, within CCNA_03509 at 3667.618 kb on - strand, within CCNA_03509 at 3667.637 kb on - strand, within CCNA_03509 at 3667.661 kb on + strand, within CCNA_03509 at 3667.731 kb on + strand, within CCNA_03509 at 3667.739 kb on - strand, within CCNA_03509 at 3667.827 kb on - strand, within CCNA_03509 at 3667.839 kb on + strand, within CCNA_03509 at 3667.938 kb on - strand, within CCNA_03509 at 3667.967 kb on + strand, within CCNA_03509 at 3668.024 kb on + strand, within CCNA_03509
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 % remove 3,665,457 - CCNA_03507 0.43 -0.4 3,665,486 + CCNA_03507 0.44 -0.5 3,665,494 - CCNA_03507 0.45 -0.1 3,665,511 - CCNA_03507 0.46 -0.1 3,665,521 - CCNA_03507 0.46 +0.2 3,665,531 + CCNA_03507 0.47 -1.0 3,665,651 + CCNA_03507 0.54 +1.0 3,665,651 - CCNA_03507 0.54 +0.3 3,665,685 + CCNA_03507 0.56 -1.0 3,665,755 + CCNA_03507 0.60 -0.5 3,665,769 + CCNA_03507 0.61 -0.2 3,665,777 + CCNA_03507 0.62 +0.3 3,665,785 - CCNA_03507 0.62 +0.3 3,665,785 - CCNA_03507 0.62 +0.0 3,665,829 + CCNA_03507 0.65 -0.0 3,665,837 - CCNA_03507 0.65 +0.4 3,665,874 - CCNA_03507 0.68 +0.3 3,665,907 + CCNA_03507 0.70 -0.5 3,665,943 - CCNA_03507 0.72 +0.4 3,665,958 + CCNA_03507 0.73 -1.3 3,665,965 + CCNA_03507 0.73 +0.7 3,665,968 - CCNA_03507 0.73 -0.7 3,665,973 - CCNA_03507 0.74 -0.2 3,666,015 + CCNA_03507 0.76 -0.1 3,666,015 + CCNA_03507 0.76 +0.2 3,666,098 + CCNA_03507 0.81 -0.1 3,666,106 - CCNA_03507 0.82 +0.1 3,666,124 - CCNA_03507 0.83 -0.4 3,666,153 + CCNA_03507 0.84 -0.3 3,666,183 + CCNA_03507 0.86 +0.6 3,666,193 + CCNA_03507 0.87 +1.5 3,666,201 - CCNA_03507 0.87 +0.3 3,666,205 + CCNA_03507 0.87 -1.3 3,666,272 + -1.8 3,666,294 + -1.1 3,666,302 - -0.4 3,666,367 - +0.6 3,666,367 - +0.2 3,666,372 - +1.0 3,666,390 + -0.3 3,666,408 + -1.6 3,666,409 + +0.5 3,666,518 + CCNA_03508 0.12 -1.0 3,666,609 - CCNA_03508 0.28 +0.2 3,666,609 - CCNA_03508 0.28 -0.2 3,666,631 + CCNA_03508 0.32 -1.1 3,666,671 + CCNA_03508 0.39 +0.2 3,666,680 - CCNA_03508 0.40 +0.8 3,666,741 + CCNA_03508 0.51 +0.2 3,666,741 + CCNA_03508 0.51 -0.1 3,666,913 + CCNA_03508 0.80 -0.3 3,666,937 + CCNA_03508 0.84 -0.8 3,666,940 - CCNA_03508 0.85 +0.0 3,666,954 + CCNA_03508 0.87 -0.7 3,666,966 - CCNA_03508 0.89 +0.3 3,667,051 + -0.6 3,667,059 - +0.3 3,667,076 - +0.2 3,667,162 - -0.4 3,667,172 - CCNA_03509 0.10 +0.1 3,667,241 - CCNA_03509 0.15 +0.2 3,667,250 + CCNA_03509 0.16 +0.2 3,667,250 + CCNA_03509 0.16 -0.5 3,667,251 - CCNA_03509 0.16 -0.2 3,667,258 - CCNA_03509 0.17 +1.6 3,667,292 - CCNA_03509 0.19 -0.5 3,667,317 + CCNA_03509 0.21 +1.0 3,667,330 + CCNA_03509 0.22 -0.2 3,667,366 + CCNA_03509 0.25 +0.2 3,667,366 + CCNA_03509 0.25 +0.8 3,667,371 + CCNA_03509 0.26 -0.7 3,667,371 + CCNA_03509 0.26 -1.4 3,667,374 - CCNA_03509 0.26 -0.6 3,667,374 - CCNA_03509 0.26 +0.8 3,667,379 - CCNA_03509 0.26 -1.3 3,667,438 + CCNA_03509 0.31 -0.7 3,667,446 - CCNA_03509 0.32 +0.2 3,667,496 + CCNA_03509 0.36 -0.2 3,667,496 + CCNA_03509 0.36 -0.1 3,667,496 + CCNA_03509 0.36 -0.4 3,667,542 + CCNA_03509 0.39 -1.6 3,667,604 - CCNA_03509 0.44 +0.0 3,667,618 - CCNA_03509 0.45 -0.1 3,667,637 - CCNA_03509 0.47 +0.1 3,667,661 + CCNA_03509 0.49 +0.6 3,667,731 + CCNA_03509 0.54 +0.1 3,667,739 - CCNA_03509 0.55 +0.4 3,667,827 - CCNA_03509 0.62 +1.1 3,667,839 + CCNA_03509 0.62 +0.6 3,667,938 - CCNA_03509 0.70 +0.4 3,667,967 + CCNA_03509 0.73 +1.1 3,668,024 + CCNA_03509 0.77 +0.8
Or see this region's nucleotide sequence