Experiment: PYE with Dimethyl Sulfoxide 0.4 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02757 and CCNA_02758 are separated by 57 nucleotides CCNA_02758 and CCNA_02759 are separated by 152 nucleotides CCNA_02759 and CCNA_02760 are separated by 60 nucleotides CCNA_02760 and CCNA_03976 overlap by 1 nucleotides CCNA_03976 and CCNA_02761 overlap by 11 nucleotides CCNA_02761 and CCNA_02762 are separated by 205 nucleotides
CCNA_02757: CCNA_02757 - sugar fermentation stimulation protein A, at 2,920,986 to 2,921,705
_02757
CCNA_02758: CCNA_02758 - hypothetical protein, at 2,921,763 to 2,922,152
_02758
CCNA_02759: CCNA_02759 - methionine aminopeptidase, at 2,922,305 to 2,923,135
_02759
CCNA_02760: CCNA_02760 - hypothetical protein, at 2,923,196 to 2,923,462
_02760
CCNA_03976: CCNA_03976 - hypothetical protein, at 2,923,462 to 2,923,683
_03976
CCNA_02761: CCNA_02761 - hypothetical protein, at 2,923,673 to 2,923,918
_02761
CCNA_02762: CCNA_02762 - DNA repair protein RadC, at 2,924,124 to 2,924,789
_02762
Position (kb)
2922
2923
2924 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2921.305 kb on + strand, within CCNA_02757 at 2921.313 kb on + strand, within CCNA_02757 at 2921.341 kb on + strand, within CCNA_02757 at 2921.354 kb on - strand, within CCNA_02757 at 2921.377 kb on + strand, within CCNA_02757 at 2921.384 kb on + strand, within CCNA_02757 at 2921.392 kb on - strand, within CCNA_02757 at 2921.410 kb on + strand, within CCNA_02757 at 2921.418 kb on - strand, within CCNA_02757 at 2921.435 kb on + strand, within CCNA_02757 at 2921.435 kb on + strand, within CCNA_02757 at 2921.443 kb on - strand, within CCNA_02757 at 2921.447 kb on + strand, within CCNA_02757 at 2921.447 kb on + strand, within CCNA_02757 at 2921.483 kb on + strand, within CCNA_02757 at 2921.491 kb on - strand, within CCNA_02757 at 2921.505 kb on + strand, within CCNA_02757 at 2921.526 kb on + strand, within CCNA_02757 at 2921.531 kb on + strand, within CCNA_02757 at 2921.559 kb on + strand, within CCNA_02757 at 2921.585 kb on + strand, within CCNA_02757 at 2921.603 kb on + strand, within CCNA_02757 at 2921.608 kb on + strand, within CCNA_02757 at 2921.616 kb on - strand, within CCNA_02757 at 2921.624 kb on - strand, within CCNA_02757 at 2921.624 kb on - strand, within CCNA_02757 at 2921.629 kb on - strand, within CCNA_02757 at 2921.699 kb on + strand at 2921.699 kb on + strand at 2921.725 kb on + strand at 2921.733 kb on - strand at 2921.761 kb on + strand at 2921.770 kb on + strand at 2921.773 kb on - strand at 2921.799 kb on - strand at 2921.916 kb on + strand, within CCNA_02758 at 2921.917 kb on + strand, within CCNA_02758 at 2921.937 kb on - strand, within CCNA_02758 at 2921.950 kb on - strand, within CCNA_02758 at 2921.957 kb on + strand, within CCNA_02758 at 2921.963 kb on + strand, within CCNA_02758 at 2922.028 kb on + strand, within CCNA_02758 at 2922.041 kb on + strand, within CCNA_02758 at 2922.041 kb on + strand, within CCNA_02758 at 2922.041 kb on + strand, within CCNA_02758 at 2922.041 kb on + strand, within CCNA_02758 at 2922.049 kb on - strand, within CCNA_02758 at 2922.049 kb on - strand, within CCNA_02758 at 2922.049 kb on - strand, within CCNA_02758 at 2922.056 kb on - strand, within CCNA_02758 at 2922.074 kb on + strand, within CCNA_02758 at 2922.074 kb on + strand, within CCNA_02758 at 2922.074 kb on + strand, within CCNA_02758 at 2922.074 kb on + strand, within CCNA_02758 at 2922.074 kb on + strand, within CCNA_02758 at 2922.074 kb on + strand, within CCNA_02758 at 2922.074 kb on + strand, within CCNA_02758 at 2922.082 kb on - strand, within CCNA_02758 at 2922.082 kb on - strand, within CCNA_02758 at 2922.082 kb on - strand, within CCNA_02758 at 2922.082 kb on - strand, within CCNA_02758 at 2922.082 kb on - strand, within CCNA_02758 at 2922.154 kb on + strand at 2922.154 kb on + strand at 2922.154 kb on + strand at 2922.159 kb on + strand at 2922.161 kb on + strand at 2922.162 kb on - strand at 2922.243 kb on + strand at 2922.243 kb on + strand at 2922.251 kb on - strand at 2922.263 kb on + strand at 2922.268 kb on + strand at 2922.350 kb on + strand at 2922.350 kb on + strand at 2922.350 kb on + strand at 2922.363 kb on - strand at 2922.363 kb on - strand at 2922.363 kb on - strand at 2922.364 kb on + strand at 2922.364 kb on + strand at 2922.364 kb on + strand at 2922.364 kb on + strand at 2922.372 kb on - strand at 2922.372 kb on - strand at 2922.379 kb on + strand at 2923.108 kb on + strand at 2923.116 kb on - strand at 2923.242 kb on + strand, within CCNA_02760 at 2923.250 kb on - strand, within CCNA_02760 at 2923.260 kb on - strand, within CCNA_02760 at 2923.297 kb on + strand, within CCNA_02760 at 2923.352 kb on + strand, within CCNA_02760 at 2923.372 kb on + strand, within CCNA_02760 at 2923.408 kb on - strand, within CCNA_02760 at 2923.423 kb on + strand, within CCNA_02760 at 2923.477 kb on - strand at 2923.500 kb on + strand, within CCNA_03976 at 2923.563 kb on - strand, within CCNA_03976 at 2923.568 kb on - strand, within CCNA_03976 at 2923.684 kb on + strand at 2923.692 kb on - strand at 2923.712 kb on - strand, within CCNA_02761 at 2923.712 kb on - strand, within CCNA_02761 at 2923.786 kb on - strand, within CCNA_02761 at 2923.791 kb on - strand, within CCNA_02761 at 2923.834 kb on + strand, within CCNA_02761 at 2923.851 kb on + strand, within CCNA_02761 at 2923.856 kb on + strand, within CCNA_02761 at 2923.864 kb on - strand, within CCNA_02761 at 2923.885 kb on + strand, within CCNA_02761 at 2923.907 kb on - strand at 2923.912 kb on - strand at 2923.968 kb on - strand at 2923.995 kb on + strand at 2924.005 kb on - strand at 2924.108 kb on - strand at 2924.134 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 % remove 2,921,305 + CCNA_02757 0.44 -0.6 2,921,313 + CCNA_02757 0.45 -0.1 2,921,341 + CCNA_02757 0.49 +0.1 2,921,354 - CCNA_02757 0.51 -1.0 2,921,377 + CCNA_02757 0.54 -0.3 2,921,384 + CCNA_02757 0.55 +0.3 2,921,392 - CCNA_02757 0.56 +0.2 2,921,410 + CCNA_02757 0.59 +1.0 2,921,418 - CCNA_02757 0.60 -0.0 2,921,435 + CCNA_02757 0.62 -0.3 2,921,435 + CCNA_02757 0.62 -0.0 2,921,443 - CCNA_02757 0.63 -0.2 2,921,447 + CCNA_02757 0.64 +0.3 2,921,447 + CCNA_02757 0.64 +1.2 2,921,483 + CCNA_02757 0.69 -0.6 2,921,491 - CCNA_02757 0.70 -0.4 2,921,505 + CCNA_02757 0.72 +0.0 2,921,526 + CCNA_02757 0.75 +0.4 2,921,531 + CCNA_02757 0.76 +0.5 2,921,559 + CCNA_02757 0.80 -0.7 2,921,585 + CCNA_02757 0.83 +0.0 2,921,603 + CCNA_02757 0.86 -0.3 2,921,608 + CCNA_02757 0.86 -1.4 2,921,616 - CCNA_02757 0.88 -0.1 2,921,624 - CCNA_02757 0.89 -1.1 2,921,624 - CCNA_02757 0.89 -0.1 2,921,629 - CCNA_02757 0.89 -0.3 2,921,699 + -1.3 2,921,699 + -1.1 2,921,725 + -0.1 2,921,733 - +0.7 2,921,761 + +0.1 2,921,770 + +2.5 2,921,773 - +0.8 2,921,799 - -1.8 2,921,916 + CCNA_02758 0.39 +0.0 2,921,917 + CCNA_02758 0.39 +0.5 2,921,937 - CCNA_02758 0.45 -0.2 2,921,950 - CCNA_02758 0.48 -1.4 2,921,957 + CCNA_02758 0.50 -0.1 2,921,963 + CCNA_02758 0.51 -0.2 2,922,028 + CCNA_02758 0.68 +0.3 2,922,041 + CCNA_02758 0.71 -0.8 2,922,041 + CCNA_02758 0.71 +0.7 2,922,041 + CCNA_02758 0.71 -0.1 2,922,041 + CCNA_02758 0.71 +0.7 2,922,049 - CCNA_02758 0.73 -0.3 2,922,049 - CCNA_02758 0.73 -0.5 2,922,049 - CCNA_02758 0.73 +0.4 2,922,056 - CCNA_02758 0.75 +0.5 2,922,074 + CCNA_02758 0.80 -0.6 2,922,074 + CCNA_02758 0.80 +0.5 2,922,074 + CCNA_02758 0.80 +0.4 2,922,074 + CCNA_02758 0.80 +1.5 2,922,074 + CCNA_02758 0.80 -0.5 2,922,074 + CCNA_02758 0.80 +0.8 2,922,074 + CCNA_02758 0.80 +2.2 2,922,082 - CCNA_02758 0.82 -0.8 2,922,082 - CCNA_02758 0.82 +1.5 2,922,082 - CCNA_02758 0.82 +0.3 2,922,082 - CCNA_02758 0.82 -0.8 2,922,082 - CCNA_02758 0.82 -0.0 2,922,154 + +0.2 2,922,154 + +0.5 2,922,154 + +0.4 2,922,159 + -1.0 2,922,161 + -0.3 2,922,162 - -2.0 2,922,243 + +0.6 2,922,243 + +0.2 2,922,251 - -1.0 2,922,263 + +0.4 2,922,268 + -0.1 2,922,350 + +0.5 2,922,350 + +0.2 2,922,350 + +1.8 2,922,363 - +0.3 2,922,363 - -0.6 2,922,363 - -0.3 2,922,364 + +0.3 2,922,364 + -0.5 2,922,364 + -0.0 2,922,364 + -0.2 2,922,372 - +1.1 2,922,372 - -1.0 2,922,379 + +0.2 2,923,108 + -0.1 2,923,116 - +0.2 2,923,242 + CCNA_02760 0.17 +0.6 2,923,250 - CCNA_02760 0.20 -1.3 2,923,260 - CCNA_02760 0.24 -0.8 2,923,297 + CCNA_02760 0.38 +1.0 2,923,352 + CCNA_02760 0.58 +0.5 2,923,372 + CCNA_02760 0.66 +0.2 2,923,408 - CCNA_02760 0.79 -0.4 2,923,423 + CCNA_02760 0.85 +0.1 2,923,477 - +0.1 2,923,500 + CCNA_03976 0.17 +0.0 2,923,563 - CCNA_03976 0.45 -0.6 2,923,568 - CCNA_03976 0.48 +1.0 2,923,684 + +0.1 2,923,692 - +0.0 2,923,712 - CCNA_02761 0.16 -0.7 2,923,712 - CCNA_02761 0.16 -0.5 2,923,786 - CCNA_02761 0.46 -0.2 2,923,791 - CCNA_02761 0.48 -0.8 2,923,834 + CCNA_02761 0.65 +0.5 2,923,851 + CCNA_02761 0.72 +0.3 2,923,856 + CCNA_02761 0.74 +0.5 2,923,864 - CCNA_02761 0.78 +0.2 2,923,885 + CCNA_02761 0.86 +0.1 2,923,907 - -0.2 2,923,912 - -0.4 2,923,968 - -0.2 2,923,995 + +1.0 2,924,005 - -0.1 2,924,108 - -0.3 2,924,134 - -0.3
Or see this region's nucleotide sequence