Experiment: PYE with Dimethyl Sulfoxide 0.4 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02634 and CCNA_02635 overlap by 1 nucleotides CCNA_02635 and CCNA_02636 are separated by 91 nucleotides CCNA_02636 and CCNA_02637 are separated by 101 nucleotides
CCNA_02634: CCNA_02634 - undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase, at 2,785,244 to 2,786,329
_02634
CCNA_02635: CCNA_02635 - cell division protein FtsW, at 2,786,329 to 2,787,501
_02635
CCNA_02636: CCNA_02636 - hypothetical protein, at 2,787,593 to 2,787,991
_02636
CCNA_02637: CCNA_02637 - PAS-family sensor histidine kinase, at 2,788,093 to 2,789,109
_02637
Position (kb)
2786
2787
2788 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2786.375 kb on - strand at 2786.383 kb on - strand at 2787.546 kb on + strand at 2787.546 kb on + strand at 2787.547 kb on + strand at 2787.554 kb on + strand at 2787.554 kb on - strand at 2787.554 kb on - strand at 2787.555 kb on - strand at 2787.555 kb on - strand at 2787.555 kb on - strand at 2787.561 kb on - strand at 2787.598 kb on - strand at 2787.600 kb on + strand at 2787.600 kb on + strand at 2787.646 kb on + strand, within CCNA_02636 at 2787.646 kb on + strand, within CCNA_02636 at 2787.646 kb on + strand, within CCNA_02636 at 2787.646 kb on + strand, within CCNA_02636 at 2787.654 kb on - strand, within CCNA_02636 at 2787.654 kb on - strand, within CCNA_02636 at 2787.658 kb on + strand, within CCNA_02636 at 2787.671 kb on + strand, within CCNA_02636 at 2787.686 kb on - strand, within CCNA_02636 at 2787.761 kb on + strand, within CCNA_02636 at 2787.769 kb on - strand, within CCNA_02636 at 2787.776 kb on - strand, within CCNA_02636 at 2787.780 kb on + strand, within CCNA_02636 at 2787.780 kb on + strand, within CCNA_02636 at 2787.783 kb on - strand, within CCNA_02636 at 2787.788 kb on - strand, within CCNA_02636 at 2787.789 kb on + strand, within CCNA_02636 at 2787.825 kb on + strand, within CCNA_02636 at 2787.908 kb on + strand, within CCNA_02636 at 2787.916 kb on - strand, within CCNA_02636 at 2787.969 kb on - strand at 2787.973 kb on + strand at 2787.981 kb on - strand at 2788.035 kb on - strand at 2788.040 kb on + strand at 2788.085 kb on + strand at 2788.092 kb on - strand at 2788.114 kb on - strand at 2788.120 kb on + strand at 2788.120 kb on + strand at 2788.120 kb on + strand at 2788.120 kb on + strand at 2788.120 kb on + strand at 2788.120 kb on + strand at 2788.120 kb on + strand at 2788.120 kb on + strand at 2788.120 kb on + strand at 2788.151 kb on + strand at 2788.160 kb on + strand at 2788.165 kb on + strand at 2788.168 kb on - strand at 2788.168 kb on - strand at 2788.173 kb on - strand at 2788.173 kb on - strand at 2788.183 kb on - strand at 2788.283 kb on - strand, within CCNA_02637 at 2788.283 kb on - strand, within CCNA_02637 at 2788.283 kb on - strand, within CCNA_02637 at 2788.288 kb on - strand, within CCNA_02637 at 2788.313 kb on - strand, within CCNA_02637 at 2788.321 kb on - strand, within CCNA_02637 at 2788.367 kb on - strand, within CCNA_02637 at 2788.404 kb on + strand, within CCNA_02637 at 2788.489 kb on + strand, within CCNA_02637
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 % remove 2,786,375 - +0.1 2,786,383 - +0.3 2,787,546 + +0.9 2,787,546 + -0.4 2,787,547 + -0.9 2,787,554 + +0.1 2,787,554 - +0.0 2,787,554 - +1.6 2,787,555 - -0.1 2,787,555 - -0.4 2,787,555 - -0.4 2,787,561 - +2.0 2,787,598 - -2.2 2,787,600 + +0.5 2,787,600 + +0.3 2,787,646 + CCNA_02636 0.13 +0.0 2,787,646 + CCNA_02636 0.13 +1.2 2,787,646 + CCNA_02636 0.13 +0.3 2,787,646 + CCNA_02636 0.13 +0.3 2,787,654 - CCNA_02636 0.15 -2.4 2,787,654 - CCNA_02636 0.15 +0.0 2,787,658 + CCNA_02636 0.16 +0.4 2,787,671 + CCNA_02636 0.20 +0.3 2,787,686 - CCNA_02636 0.23 -2.8 2,787,761 + CCNA_02636 0.42 +0.8 2,787,769 - CCNA_02636 0.44 -0.5 2,787,776 - CCNA_02636 0.46 -0.7 2,787,780 + CCNA_02636 0.47 +0.2 2,787,780 + CCNA_02636 0.47 +1.4 2,787,783 - CCNA_02636 0.48 -0.4 2,787,788 - CCNA_02636 0.49 -0.7 2,787,789 + CCNA_02636 0.49 +0.5 2,787,825 + CCNA_02636 0.58 -0.1 2,787,908 + CCNA_02636 0.79 +0.8 2,787,916 - CCNA_02636 0.81 -0.5 2,787,969 - -2.1 2,787,973 + -0.1 2,787,981 - +0.7 2,788,035 - -0.8 2,788,040 + -1.1 2,788,085 + -0.4 2,788,092 - -1.2 2,788,114 - +0.7 2,788,120 + +0.1 2,788,120 + -0.1 2,788,120 + +0.0 2,788,120 + -0.3 2,788,120 + +0.8 2,788,120 + -0.0 2,788,120 + -0.1 2,788,120 + +0.5 2,788,120 + -0.1 2,788,151 + -1.0 2,788,160 + -0.7 2,788,165 + -0.2 2,788,168 - +0.1 2,788,168 - -0.1 2,788,173 - -1.4 2,788,173 - -0.1 2,788,183 - +0.1 2,788,283 - CCNA_02637 0.19 -0.2 2,788,283 - CCNA_02637 0.19 -1.1 2,788,283 - CCNA_02637 0.19 +0.4 2,788,288 - CCNA_02637 0.19 -0.5 2,788,313 - CCNA_02637 0.22 +0.1 2,788,321 - CCNA_02637 0.22 +0.7 2,788,367 - CCNA_02637 0.27 -0.4 2,788,404 + CCNA_02637 0.31 -1.4 2,788,489 + CCNA_02637 0.39 -0.2
Or see this region's nucleotide sequence