Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02635

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02634 and CCNA_02635 overlap by 1 nucleotidesCCNA_02635 and CCNA_02636 are separated by 91 nucleotidesCCNA_02636 and CCNA_02637 are separated by 101 nucleotides CCNA_02634: CCNA_02634 - undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase, at 2,785,244 to 2,786,329 _02634 CCNA_02635: CCNA_02635 - cell division protein FtsW, at 2,786,329 to 2,787,501 _02635 CCNA_02636: CCNA_02636 - hypothetical protein, at 2,787,593 to 2,787,991 _02636 CCNA_02637: CCNA_02637 - PAS-family sensor histidine kinase, at 2,788,093 to 2,789,109 _02637 Position (kb) 2786 2787 2788Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2786.375 kb on - strandat 2786.383 kb on - strandat 2787.546 kb on + strandat 2787.546 kb on + strandat 2787.547 kb on + strandat 2787.554 kb on + strandat 2787.554 kb on - strandat 2787.554 kb on - strandat 2787.555 kb on - strandat 2787.555 kb on - strandat 2787.555 kb on - strandat 2787.561 kb on - strandat 2787.598 kb on - strandat 2787.600 kb on + strandat 2787.600 kb on + strandat 2787.646 kb on + strand, within CCNA_02636at 2787.646 kb on + strand, within CCNA_02636at 2787.646 kb on + strand, within CCNA_02636at 2787.646 kb on + strand, within CCNA_02636at 2787.654 kb on - strand, within CCNA_02636at 2787.654 kb on - strand, within CCNA_02636at 2787.658 kb on + strand, within CCNA_02636at 2787.671 kb on + strand, within CCNA_02636at 2787.686 kb on - strand, within CCNA_02636at 2787.761 kb on + strand, within CCNA_02636at 2787.769 kb on - strand, within CCNA_02636at 2787.776 kb on - strand, within CCNA_02636at 2787.780 kb on + strand, within CCNA_02636at 2787.780 kb on + strand, within CCNA_02636at 2787.783 kb on - strand, within CCNA_02636at 2787.788 kb on - strand, within CCNA_02636at 2787.789 kb on + strand, within CCNA_02636at 2787.825 kb on + strand, within CCNA_02636at 2787.908 kb on + strand, within CCNA_02636at 2787.916 kb on - strand, within CCNA_02636at 2787.969 kb on - strandat 2787.973 kb on + strandat 2787.981 kb on - strandat 2788.035 kb on - strandat 2788.040 kb on + strandat 2788.085 kb on + strandat 2788.092 kb on - strandat 2788.114 kb on - strandat 2788.120 kb on + strandat 2788.120 kb on + strandat 2788.120 kb on + strandat 2788.120 kb on + strandat 2788.120 kb on + strandat 2788.120 kb on + strandat 2788.120 kb on + strandat 2788.120 kb on + strandat 2788.120 kb on + strandat 2788.151 kb on + strandat 2788.160 kb on + strandat 2788.165 kb on + strandat 2788.168 kb on - strandat 2788.168 kb on - strandat 2788.173 kb on - strandat 2788.173 kb on - strandat 2788.183 kb on - strandat 2788.283 kb on - strand, within CCNA_02637at 2788.283 kb on - strand, within CCNA_02637at 2788.283 kb on - strand, within CCNA_02637at 2788.288 kb on - strand, within CCNA_02637at 2788.313 kb on - strand, within CCNA_02637at 2788.321 kb on - strand, within CCNA_02637at 2788.367 kb on - strand, within CCNA_02637at 2788.404 kb on + strand, within CCNA_02637at 2788.489 kb on + strand, within CCNA_02637

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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2,786,375 - +0.1
2,786,383 - +0.3
2,787,546 + +0.9
2,787,546 + -0.4
2,787,547 + -0.9
2,787,554 + +0.1
2,787,554 - +0.0
2,787,554 - +1.6
2,787,555 - -0.1
2,787,555 - -0.4
2,787,555 - -0.4
2,787,561 - +2.0
2,787,598 - -2.2
2,787,600 + +0.5
2,787,600 + +0.3
2,787,646 + CCNA_02636 0.13 +0.0
2,787,646 + CCNA_02636 0.13 +1.2
2,787,646 + CCNA_02636 0.13 +0.3
2,787,646 + CCNA_02636 0.13 +0.3
2,787,654 - CCNA_02636 0.15 -2.4
2,787,654 - CCNA_02636 0.15 +0.0
2,787,658 + CCNA_02636 0.16 +0.4
2,787,671 + CCNA_02636 0.20 +0.3
2,787,686 - CCNA_02636 0.23 -2.8
2,787,761 + CCNA_02636 0.42 +0.8
2,787,769 - CCNA_02636 0.44 -0.5
2,787,776 - CCNA_02636 0.46 -0.7
2,787,780 + CCNA_02636 0.47 +0.2
2,787,780 + CCNA_02636 0.47 +1.4
2,787,783 - CCNA_02636 0.48 -0.4
2,787,788 - CCNA_02636 0.49 -0.7
2,787,789 + CCNA_02636 0.49 +0.5
2,787,825 + CCNA_02636 0.58 -0.1
2,787,908 + CCNA_02636 0.79 +0.8
2,787,916 - CCNA_02636 0.81 -0.5
2,787,969 - -2.1
2,787,973 + -0.1
2,787,981 - +0.7
2,788,035 - -0.8
2,788,040 + -1.1
2,788,085 + -0.4
2,788,092 - -1.2
2,788,114 - +0.7
2,788,120 + +0.1
2,788,120 + -0.1
2,788,120 + +0.0
2,788,120 + -0.3
2,788,120 + +0.8
2,788,120 + -0.0
2,788,120 + -0.1
2,788,120 + +0.5
2,788,120 + -0.1
2,788,151 + -1.0
2,788,160 + -0.7
2,788,165 + -0.2
2,788,168 - +0.1
2,788,168 - -0.1
2,788,173 - -1.4
2,788,173 - -0.1
2,788,183 - +0.1
2,788,283 - CCNA_02637 0.19 -0.2
2,788,283 - CCNA_02637 0.19 -1.1
2,788,283 - CCNA_02637 0.19 +0.4
2,788,288 - CCNA_02637 0.19 -0.5
2,788,313 - CCNA_02637 0.22 +0.1
2,788,321 - CCNA_02637 0.22 +0.7
2,788,367 - CCNA_02637 0.27 -0.4
2,788,404 + CCNA_02637 0.31 -1.4
2,788,489 + CCNA_02637 0.39 -0.2

Or see this region's nucleotide sequence