Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02007

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02005 and CCNA_02006 overlap by 4 nucleotidesCCNA_02006 and CCNA_02007 overlap by 8 nucleotidesCCNA_02007 and CCNA_02008 overlap by 1 nucleotides CCNA_02005: CCNA_02005 - inosine-uridine nucleoside N-ribohydrolase, at 2,152,629 to 2,153,588 _02005 CCNA_02006: CCNA_02006 - lipoprotein releasing system ATP-binding protein lolD, at 2,153,585 to 2,154,271 _02006 CCNA_02007: CCNA_02007 - lipoprotein releasing system transmembrane protein lolE, at 2,154,264 to 2,155,544 _02007 CCNA_02008: CCNA_02008 - prolyl-tRNA synthetase, at 2,155,544 to 2,156,875 _02008 Position (kb) 2154 2155 2156Strain fitness (log2 ratio) -2 -1 0 1at 2153.273 kb on + strand, within CCNA_02005at 2153.283 kb on + strand, within CCNA_02005at 2153.338 kb on + strand, within CCNA_02005at 2153.347 kb on - strand, within CCNA_02005at 2153.352 kb on + strand, within CCNA_02005at 2153.352 kb on + strand, within CCNA_02005at 2153.352 kb on + strand, within CCNA_02005at 2153.352 kb on + strand, within CCNA_02005at 2153.360 kb on - strand, within CCNA_02005at 2153.360 kb on - strand, within CCNA_02005at 2153.360 kb on - strand, within CCNA_02005at 2153.360 kb on - strand, within CCNA_02005at 2153.360 kb on - strand, within CCNA_02005at 2153.360 kb on - strand, within CCNA_02005at 2153.360 kb on - strand, within CCNA_02005at 2153.375 kb on + strand, within CCNA_02005at 2153.410 kb on - strand, within CCNA_02005at 2153.507 kb on - strandat 2153.529 kb on - strandat 2153.590 kb on - strandat 2153.590 kb on - strandat 2153.590 kb on - strandat 2153.590 kb on - strandat 2153.590 kb on - strandat 2153.599 kb on + strandat 2153.606 kb on - strandat 2155.551 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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2,153,273 + CCNA_02005 0.67 +0.4
2,153,283 + CCNA_02005 0.68 +0.2
2,153,338 + CCNA_02005 0.74 +0.9
2,153,347 - CCNA_02005 0.75 -1.8
2,153,352 + CCNA_02005 0.75 +0.3
2,153,352 + CCNA_02005 0.75 +0.6
2,153,352 + CCNA_02005 0.75 -1.8
2,153,352 + CCNA_02005 0.75 +0.9
2,153,360 - CCNA_02005 0.76 -1.2
2,153,360 - CCNA_02005 0.76 +0.7
2,153,360 - CCNA_02005 0.76 +0.1
2,153,360 - CCNA_02005 0.76 +1.6
2,153,360 - CCNA_02005 0.76 +0.4
2,153,360 - CCNA_02005 0.76 -0.2
2,153,360 - CCNA_02005 0.76 +0.2
2,153,375 + CCNA_02005 0.78 +0.9
2,153,410 - CCNA_02005 0.81 +0.3
2,153,507 - +0.1
2,153,529 - +0.5
2,153,590 - +0.3
2,153,590 - +0.6
2,153,590 - +0.1
2,153,590 - +0.3
2,153,590 - -0.1
2,153,599 + +0.8
2,153,606 - +0.5
2,155,551 + +0.5

Or see this region's nucleotide sequence