Experiment: PYE with Dimethyl Sulfoxide 0.4 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01817 and CCNA_01818 are separated by 0 nucleotides CCNA_01818 and CCNA_01819 are separated by 157 nucleotides CCNA_01819 and CCNA_01820 are separated by 12 nucleotides
CCNA_01817: CCNA_01817 - nitrogen assimilation regulatory protein ntrX, at 1,943,552 to 1,944,940
_01817
CCNA_01818: CCNA_01818 - D-alanine aminotransferase, at 1,944,941 to 1,945,804
_01818
CCNA_01819: CCNA_01819 - RNA-binding protein, Hfq family, at 1,945,962 to 1,946,210
_01819
CCNA_01820: CCNA_01820 - GTP-binding protein hflX, at 1,946,223 to 1,947,563
_01820
Position (kb)
1944
1945
1946 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1943.966 kb on - strand, within CCNA_01817 at 1944.003 kb on - strand, within CCNA_01817 at 1944.100 kb on - strand, within CCNA_01817 at 1944.130 kb on - strand, within CCNA_01817 at 1944.290 kb on + strand, within CCNA_01817 at 1944.298 kb on - strand, within CCNA_01817 at 1944.327 kb on - strand, within CCNA_01817 at 1944.455 kb on - strand, within CCNA_01817 at 1944.548 kb on + strand, within CCNA_01817 at 1944.569 kb on + strand, within CCNA_01817 at 1944.588 kb on + strand, within CCNA_01817 at 1944.590 kb on + strand, within CCNA_01817 at 1944.590 kb on + strand, within CCNA_01817 at 1944.878 kb on + strand at 1944.878 kb on + strand at 1944.886 kb on - strand at 1945.107 kb on + strand, within CCNA_01818 at 1945.107 kb on + strand, within CCNA_01818 at 1945.107 kb on + strand, within CCNA_01818 at 1945.115 kb on - strand, within CCNA_01818 at 1945.128 kb on - strand, within CCNA_01818 at 1945.160 kb on + strand, within CCNA_01818 at 1945.194 kb on + strand, within CCNA_01818 at 1945.199 kb on + strand, within CCNA_01818 at 1945.241 kb on + strand, within CCNA_01818 at 1945.248 kb on - strand, within CCNA_01818 at 1945.272 kb on + strand, within CCNA_01818 at 1945.312 kb on + strand, within CCNA_01818 at 1945.318 kb on + strand, within CCNA_01818 at 1945.326 kb on - strand, within CCNA_01818 at 1945.326 kb on - strand, within CCNA_01818 at 1945.402 kb on + strand, within CCNA_01818 at 1945.416 kb on - strand, within CCNA_01818 at 1945.467 kb on + strand, within CCNA_01818 at 1945.509 kb on - strand, within CCNA_01818 at 1945.526 kb on + strand, within CCNA_01818 at 1945.526 kb on + strand, within CCNA_01818 at 1945.536 kb on + strand, within CCNA_01818 at 1945.537 kb on - strand, within CCNA_01818 at 1945.583 kb on - strand, within CCNA_01818 at 1945.585 kb on + strand, within CCNA_01818 at 1945.591 kb on - strand, within CCNA_01818 at 1945.593 kb on - strand, within CCNA_01818 at 1945.608 kb on + strand, within CCNA_01818 at 1945.628 kb on + strand, within CCNA_01818 at 1945.716 kb on + strand, within CCNA_01818 at 1945.724 kb on - strand at 1945.898 kb on + strand at 1945.915 kb on - strand at 1946.211 kb on + strand at 1946.219 kb on - strand at 1946.219 kb on - strand at 1946.219 kb on - strand at 1946.219 kb on - strand at 1946.219 kb on - strand at 1946.447 kb on + strand, within CCNA_01820 at 1946.449 kb on - strand, within CCNA_01820 at 1946.524 kb on - strand, within CCNA_01820 at 1946.524 kb on - strand, within CCNA_01820 at 1946.524 kb on - strand, within CCNA_01820 at 1946.580 kb on + strand, within CCNA_01820 at 1946.633 kb on - strand, within CCNA_01820 at 1946.645 kb on + strand, within CCNA_01820 at 1946.648 kb on - strand, within CCNA_01820 at 1946.648 kb on - strand, within CCNA_01820 at 1946.681 kb on + strand, within CCNA_01820 at 1946.681 kb on + strand, within CCNA_01820 at 1946.681 kb on + strand, within CCNA_01820 at 1946.681 kb on + strand, within CCNA_01820 at 1946.689 kb on - strand, within CCNA_01820 at 1946.770 kb on - strand, within CCNA_01820
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 % remove 1,943,966 - CCNA_01817 0.30 +0.6 1,944,003 - CCNA_01817 0.32 -1.4 1,944,100 - CCNA_01817 0.39 -0.9 1,944,130 - CCNA_01817 0.42 +0.2 1,944,290 + CCNA_01817 0.53 +0.0 1,944,298 - CCNA_01817 0.54 +0.3 1,944,327 - CCNA_01817 0.56 -0.1 1,944,455 - CCNA_01817 0.65 -1.1 1,944,548 + CCNA_01817 0.72 -0.3 1,944,569 + CCNA_01817 0.73 +0.1 1,944,588 + CCNA_01817 0.75 -0.0 1,944,590 + CCNA_01817 0.75 +0.2 1,944,590 + CCNA_01817 0.75 +0.2 1,944,878 + +0.2 1,944,878 + +2.5 1,944,886 - -0.6 1,945,107 + CCNA_01818 0.19 +1.3 1,945,107 + CCNA_01818 0.19 -0.2 1,945,107 + CCNA_01818 0.19 +0.0 1,945,115 - CCNA_01818 0.20 -1.3 1,945,128 - CCNA_01818 0.22 +1.2 1,945,160 + CCNA_01818 0.25 -0.4 1,945,194 + CCNA_01818 0.29 +0.9 1,945,199 + CCNA_01818 0.30 +0.4 1,945,241 + CCNA_01818 0.35 +0.5 1,945,248 - CCNA_01818 0.36 -1.1 1,945,272 + CCNA_01818 0.38 -0.1 1,945,312 + CCNA_01818 0.43 +0.1 1,945,318 + CCNA_01818 0.44 -0.9 1,945,326 - CCNA_01818 0.45 +0.1 1,945,326 - CCNA_01818 0.45 +0.0 1,945,402 + CCNA_01818 0.53 +0.2 1,945,416 - CCNA_01818 0.55 -0.6 1,945,467 + CCNA_01818 0.61 +0.0 1,945,509 - CCNA_01818 0.66 -1.0 1,945,526 + CCNA_01818 0.68 +0.0 1,945,526 + CCNA_01818 0.68 +0.2 1,945,536 + CCNA_01818 0.69 +0.4 1,945,537 - CCNA_01818 0.69 -1.3 1,945,583 - CCNA_01818 0.74 -1.3 1,945,585 + CCNA_01818 0.75 +0.7 1,945,591 - CCNA_01818 0.75 +0.3 1,945,593 - CCNA_01818 0.75 -0.8 1,945,608 + CCNA_01818 0.77 -0.6 1,945,628 + CCNA_01818 0.80 +1.9 1,945,716 + CCNA_01818 0.90 +0.5 1,945,724 - +0.9 1,945,898 + +0.4 1,945,915 - -1.4 1,946,211 + +0.7 1,946,219 - -1.0 1,946,219 - -0.8 1,946,219 - +0.3 1,946,219 - -0.5 1,946,219 - -1.8 1,946,447 + CCNA_01820 0.17 -0.0 1,946,449 - CCNA_01820 0.17 -0.1 1,946,524 - CCNA_01820 0.22 -0.2 1,946,524 - CCNA_01820 0.22 -0.7 1,946,524 - CCNA_01820 0.22 -2.7 1,946,580 + CCNA_01820 0.27 +0.2 1,946,633 - CCNA_01820 0.31 -0.3 1,946,645 + CCNA_01820 0.31 +0.6 1,946,648 - CCNA_01820 0.32 +0.5 1,946,648 - CCNA_01820 0.32 -1.2 1,946,681 + CCNA_01820 0.34 +0.6 1,946,681 + CCNA_01820 0.34 -0.4 1,946,681 + CCNA_01820 0.34 -0.1 1,946,681 + CCNA_01820 0.34 -0.1 1,946,689 - CCNA_01820 0.35 +0.9 1,946,770 - CCNA_01820 0.41 -0.6
Or see this region's nucleotide sequence