Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01795

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01793 and CCNA_01794 are separated by 12 nucleotidesCCNA_01794 and CCNA_01795 are separated by 113 nucleotidesCCNA_01795 and CCNA_01797 are separated by 353 nucleotidesCCNA_01797 and CCNA_01799 are separated by 165 nucleotides CCNA_01793: CCNA_01793 - aspartate protease, at 1,919,960 to 1,920,958 _01793 CCNA_01794: CCNA_01794 - enoyl-CoA hydratase/isomerase family, at 1,920,971 to 1,921,741 _01794 CCNA_01795: CCNA_01795 - phosphopyruvate hydratase, at 1,921,855 to 1,923,135 _01795 CCNA_01797: CCNA_01797 - FtsB-related septum formation initiator, at 1,923,489 to 1,923,791 _01797 CCNA_01799: CCNA_01799 - pyruvate dehydrogenase E1 component alpha subunit, at 1,923,957 to 1,924,988 _01799 Position (kb) 1921 1922 1923 1924Strain fitness (log2 ratio) -2 -1 0 1 2at 1920.855 kb on - strand, within CCNA_01793at 1920.887 kb on - strandat 1920.887 kb on - strandat 1920.921 kb on - strandat 1920.921 kb on - strandat 1920.942 kb on - strandat 1920.954 kb on + strandat 1920.989 kb on + strandat 1920.995 kb on + strandat 1920.997 kb on - strandat 1921.019 kb on - strandat 1921.025 kb on + strandat 1921.055 kb on - strand, within CCNA_01794at 1921.084 kb on - strand, within CCNA_01794at 1921.157 kb on + strand, within CCNA_01794at 1921.157 kb on + strand, within CCNA_01794at 1921.160 kb on - strand, within CCNA_01794at 1921.165 kb on - strand, within CCNA_01794at 1921.165 kb on - strand, within CCNA_01794at 1921.165 kb on - strand, within CCNA_01794at 1921.184 kb on - strand, within CCNA_01794at 1921.228 kb on - strand, within CCNA_01794at 1921.273 kb on + strand, within CCNA_01794at 1921.281 kb on - strand, within CCNA_01794at 1921.326 kb on - strand, within CCNA_01794at 1921.335 kb on + strand, within CCNA_01794at 1921.343 kb on - strand, within CCNA_01794at 1921.343 kb on - strand, within CCNA_01794at 1921.345 kb on + strand, within CCNA_01794at 1921.345 kb on + strand, within CCNA_01794at 1921.353 kb on - strand, within CCNA_01794at 1921.353 kb on - strand, within CCNA_01794at 1921.353 kb on - strand, within CCNA_01794at 1921.392 kb on + strand, within CCNA_01794at 1921.392 kb on + strand, within CCNA_01794at 1921.397 kb on + strand, within CCNA_01794at 1921.408 kb on + strand, within CCNA_01794at 1921.463 kb on - strand, within CCNA_01794at 1921.466 kb on + strand, within CCNA_01794at 1921.466 kb on + strand, within CCNA_01794at 1921.485 kb on + strand, within CCNA_01794at 1921.485 kb on + strand, within CCNA_01794at 1921.493 kb on - strand, within CCNA_01794at 1921.537 kb on + strand, within CCNA_01794at 1921.553 kb on + strand, within CCNA_01794at 1921.579 kb on + strand, within CCNA_01794at 1921.655 kb on + strand, within CCNA_01794at 1921.670 kb on - strandat 1921.670 kb on - strandat 1921.670 kb on - strandat 1921.676 kb on - strandat 1921.758 kb on - strandat 1921.758 kb on - strandat 1921.783 kb on - strandat 1921.851 kb on + strandat 1921.859 kb on - strandat 1921.905 kb on + strandat 1921.965 kb on + strandat 1922.105 kb on + strand, within CCNA_01795at 1922.285 kb on + strand, within CCNA_01795at 1922.428 kb on + strand, within CCNA_01795at 1922.436 kb on - strand, within CCNA_01795at 1922.443 kb on + strand, within CCNA_01795at 1922.542 kb on + strand, within CCNA_01795at 1922.738 kb on + strand, within CCNA_01795at 1922.808 kb on + strand, within CCNA_01795at 1922.832 kb on + strand, within CCNA_01795at 1922.835 kb on - strand, within CCNA_01795at 1922.926 kb on + strand, within CCNA_01795at 1922.934 kb on - strand, within CCNA_01795at 1922.968 kb on - strand, within CCNA_01795at 1922.985 kb on + strand, within CCNA_01795at 1923.012 kb on + strandat 1923.049 kb on + strandat 1923.054 kb on + strandat 1923.108 kb on - strandat 1923.126 kb on - strandat 1923.145 kb on + strandat 1923.155 kb on + strandat 1923.190 kb on + strandat 1923.289 kb on + strandat 1923.312 kb on + strandat 1923.356 kb on - strandat 1923.406 kb on + strandat 1923.483 kb on + strandat 1923.758 kb on + strand, within CCNA_01797at 1923.773 kb on + strandat 1923.773 kb on + strandat 1923.798 kb on - strandat 1923.821 kb on + strandat 1923.864 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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1,920,855 - CCNA_01793 0.90 +0.4
1,920,887 - +0.7
1,920,887 - +0.2
1,920,921 - +0.4
1,920,921 - +1.6
1,920,942 - -0.3
1,920,954 + -0.2
1,920,989 + +0.4
1,920,995 + -0.1
1,920,997 - -0.4
1,921,019 - +0.5
1,921,025 + +0.7
1,921,055 - CCNA_01794 0.11 +1.0
1,921,084 - CCNA_01794 0.15 +0.2
1,921,157 + CCNA_01794 0.24 -0.4
1,921,157 + CCNA_01794 0.24 +2.1
1,921,160 - CCNA_01794 0.25 -0.8
1,921,165 - CCNA_01794 0.25 -0.4
1,921,165 - CCNA_01794 0.25 +0.9
1,921,165 - CCNA_01794 0.25 +0.0
1,921,184 - CCNA_01794 0.28 -0.7
1,921,228 - CCNA_01794 0.33 -0.9
1,921,273 + CCNA_01794 0.39 -0.1
1,921,281 - CCNA_01794 0.40 -0.6
1,921,326 - CCNA_01794 0.46 +0.4
1,921,335 + CCNA_01794 0.47 -1.1
1,921,343 - CCNA_01794 0.48 +1.5
1,921,343 - CCNA_01794 0.48 +0.1
1,921,345 + CCNA_01794 0.49 -0.7
1,921,345 + CCNA_01794 0.49 -0.8
1,921,353 - CCNA_01794 0.50 +0.5
1,921,353 - CCNA_01794 0.50 -0.1
1,921,353 - CCNA_01794 0.50 +1.7
1,921,392 + CCNA_01794 0.55 -0.6
1,921,392 + CCNA_01794 0.55 -0.5
1,921,397 + CCNA_01794 0.55 -0.9
1,921,408 + CCNA_01794 0.57 -0.1
1,921,463 - CCNA_01794 0.64 -0.1
1,921,466 + CCNA_01794 0.64 +0.8
1,921,466 + CCNA_01794 0.64 +0.3
1,921,485 + CCNA_01794 0.67 -1.3
1,921,485 + CCNA_01794 0.67 -0.2
1,921,493 - CCNA_01794 0.68 -0.5
1,921,537 + CCNA_01794 0.73 -1.2
1,921,553 + CCNA_01794 0.75 +0.7
1,921,579 + CCNA_01794 0.79 +0.4
1,921,655 + CCNA_01794 0.89 -0.7
1,921,670 - -0.3
1,921,670 - +0.3
1,921,670 - -0.7
1,921,676 - +0.5
1,921,758 - +0.6
1,921,758 - -0.0
1,921,783 - -0.6
1,921,851 + -0.1
1,921,859 - -0.7
1,921,905 + -0.5
1,921,965 + -0.1
1,922,105 + CCNA_01795 0.20 -0.2
1,922,285 + CCNA_01795 0.34 -1.0
1,922,428 + CCNA_01795 0.45 +0.3
1,922,436 - CCNA_01795 0.45 +0.3
1,922,443 + CCNA_01795 0.46 -1.9
1,922,542 + CCNA_01795 0.54 +0.9
1,922,738 + CCNA_01795 0.69 -0.1
1,922,808 + CCNA_01795 0.74 +0.1
1,922,832 + CCNA_01795 0.76 +0.3
1,922,835 - CCNA_01795 0.77 +0.3
1,922,926 + CCNA_01795 0.84 -0.8
1,922,934 - CCNA_01795 0.84 +0.9
1,922,968 - CCNA_01795 0.87 +0.1
1,922,985 + CCNA_01795 0.88 -0.1
1,923,012 + +0.5
1,923,049 + -0.6
1,923,054 + -0.5
1,923,108 - +2.3
1,923,126 - -0.2
1,923,145 + +0.3
1,923,155 + +0.6
1,923,190 + +0.0
1,923,289 + +0.5
1,923,312 + -0.3
1,923,356 - -2.3
1,923,406 + +0.4
1,923,483 + +0.1
1,923,758 + CCNA_01797 0.89 -0.4
1,923,773 + +0.4
1,923,773 + +0.1
1,923,798 - -1.7
1,923,821 + +0.7
1,923,864 + -0.2

Or see this region's nucleotide sequence