Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01618

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01616 and CCNA_01617 overlap by 1 nucleotidesCCNA_01617 and CCNA_01618 are separated by 47 nucleotidesCCNA_01618 and CCNA_01619 are separated by 2 nucleotidesCCNA_01619 and CCNA_01620 are separated by 49 nucleotides CCNA_01616: CCNA_01616 - rod shape-determining protein RodA, at 1,737,982 to 1,739,139 _01616 CCNA_01617: CCNA_01617 - acetyltransferase, at 1,739,139 to 1,739,690 _01617 CCNA_01618: CCNA_01618 - uracil-DNA glycosylase, at 1,739,738 to 1,740,415 _01618 CCNA_01619: CCNA_01619 - NYN domain protein, at 1,740,418 to 1,741,014 _01619 CCNA_01620: CCNA_01620 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase, at 1,741,064 to 1,741,558 _01620 Position (kb) 1739 1740 1741Strain fitness (log2 ratio) -2 -1 0 1 2at 1739.115 kb on - strandat 1739.115 kb on - strandat 1739.133 kb on + strandat 1739.133 kb on + strandat 1739.141 kb on - strandat 1739.224 kb on - strand, within CCNA_01617at 1739.242 kb on + strand, within CCNA_01617at 1739.242 kb on + strand, within CCNA_01617at 1739.250 kb on - strand, within CCNA_01617at 1739.266 kb on + strand, within CCNA_01617at 1739.272 kb on + strand, within CCNA_01617at 1739.277 kb on + strand, within CCNA_01617at 1739.314 kb on - strand, within CCNA_01617at 1739.321 kb on - strand, within CCNA_01617at 1739.328 kb on + strand, within CCNA_01617at 1739.334 kb on + strand, within CCNA_01617at 1739.403 kb on - strand, within CCNA_01617at 1739.466 kb on + strand, within CCNA_01617at 1739.466 kb on + strand, within CCNA_01617at 1739.474 kb on - strand, within CCNA_01617at 1739.474 kb on - strand, within CCNA_01617at 1739.474 kb on - strand, within CCNA_01617at 1739.476 kb on + strand, within CCNA_01617at 1739.480 kb on - strand, within CCNA_01617at 1739.560 kb on - strand, within CCNA_01617at 1739.597 kb on + strand, within CCNA_01617at 1739.625 kb on + strand, within CCNA_01617at 1739.652 kb on - strandat 1739.654 kb on - strandat 1739.721 kb on - strandat 1739.743 kb on - strandat 1739.757 kb on - strandat 1739.760 kb on + strandat 1739.760 kb on + strandat 1739.768 kb on - strandat 1739.768 kb on - strandat 1739.768 kb on - strandat 1739.768 kb on - strandat 1739.768 kb on - strandat 1739.768 kb on - strandat 1739.768 kb on - strandat 1739.768 kb on - strandat 1740.076 kb on + strand, within CCNA_01618at 1740.159 kb on - strand, within CCNA_01618at 1740.409 kb on + strandat 1740.411 kb on + strandat 1740.411 kb on + strandat 1740.416 kb on + strandat 1740.416 kb on + strandat 1740.416 kb on + strandat 1740.416 kb on + strandat 1740.424 kb on - strandat 1740.429 kb on - strandat 1740.429 kb on - strandat 1740.449 kb on + strandat 1740.460 kb on + strandat 1740.552 kb on + strand, within CCNA_01619at 1740.596 kb on + strand, within CCNA_01619at 1740.626 kb on + strand, within CCNA_01619at 1740.626 kb on + strand, within CCNA_01619at 1740.634 kb on - strand, within CCNA_01619at 1740.656 kb on + strand, within CCNA_01619at 1740.656 kb on + strand, within CCNA_01619at 1740.729 kb on - strand, within CCNA_01619at 1740.761 kb on - strand, within CCNA_01619at 1740.762 kb on - strand, within CCNA_01619at 1740.787 kb on - strand, within CCNA_01619at 1740.789 kb on + strand, within CCNA_01619at 1740.797 kb on - strand, within CCNA_01619at 1740.797 kb on - strand, within CCNA_01619at 1740.880 kb on + strand, within CCNA_01619at 1740.888 kb on - strand, within CCNA_01619at 1740.930 kb on + strand, within CCNA_01619at 1740.945 kb on - strand, within CCNA_01619at 1740.956 kb on + strandat 1740.984 kb on + strandat 1741.015 kb on + strandat 1741.022 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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1,739,115 - -0.1
1,739,115 - -1.3
1,739,133 + +0.1
1,739,133 + +0.9
1,739,141 - -1.4
1,739,224 - CCNA_01617 0.15 -1.5
1,739,242 + CCNA_01617 0.19 -0.1
1,739,242 + CCNA_01617 0.19 +0.2
1,739,250 - CCNA_01617 0.20 -0.8
1,739,266 + CCNA_01617 0.23 +0.5
1,739,272 + CCNA_01617 0.24 +0.4
1,739,277 + CCNA_01617 0.25 -0.1
1,739,314 - CCNA_01617 0.32 +0.8
1,739,321 - CCNA_01617 0.33 +0.1
1,739,328 + CCNA_01617 0.34 -0.3
1,739,334 + CCNA_01617 0.35 +0.4
1,739,403 - CCNA_01617 0.48 -0.1
1,739,466 + CCNA_01617 0.59 +0.3
1,739,466 + CCNA_01617 0.59 -0.0
1,739,474 - CCNA_01617 0.61 -0.3
1,739,474 - CCNA_01617 0.61 +0.3
1,739,474 - CCNA_01617 0.61 -0.0
1,739,476 + CCNA_01617 0.61 +0.2
1,739,480 - CCNA_01617 0.62 -0.4
1,739,560 - CCNA_01617 0.76 +0.6
1,739,597 + CCNA_01617 0.83 +0.0
1,739,625 + CCNA_01617 0.88 -0.5
1,739,652 - -1.1
1,739,654 - -0.4
1,739,721 - +1.1
1,739,743 - +0.8
1,739,757 - +1.4
1,739,760 + -1.8
1,739,760 + +0.3
1,739,768 - +0.3
1,739,768 - +0.3
1,739,768 - +0.1
1,739,768 - +0.3
1,739,768 - +1.9
1,739,768 - +0.3
1,739,768 - +0.5
1,739,768 - +0.5
1,740,076 + CCNA_01618 0.50 +0.9
1,740,159 - CCNA_01618 0.62 +0.9
1,740,409 + -0.5
1,740,411 + -1.4
1,740,411 + -0.1
1,740,416 + -0.1
1,740,416 + -0.4
1,740,416 + -0.9
1,740,416 + +0.3
1,740,424 - -0.1
1,740,429 - +0.2
1,740,429 - +0.1
1,740,449 + +0.9
1,740,460 + +0.5
1,740,552 + CCNA_01619 0.22 +0.2
1,740,596 + CCNA_01619 0.30 +0.1
1,740,626 + CCNA_01619 0.35 +0.7
1,740,626 + CCNA_01619 0.35 +1.1
1,740,634 - CCNA_01619 0.36 -1.3
1,740,656 + CCNA_01619 0.40 +0.3
1,740,656 + CCNA_01619 0.40 +0.1
1,740,729 - CCNA_01619 0.52 +0.4
1,740,761 - CCNA_01619 0.57 +0.4
1,740,762 - CCNA_01619 0.58 +0.4
1,740,787 - CCNA_01619 0.62 +0.3
1,740,789 + CCNA_01619 0.62 +0.1
1,740,797 - CCNA_01619 0.63 +0.9
1,740,797 - CCNA_01619 0.63 +0.6
1,740,880 + CCNA_01619 0.77 +0.7
1,740,888 - CCNA_01619 0.79 +0.6
1,740,930 + CCNA_01619 0.86 -0.5
1,740,945 - CCNA_01619 0.88 +0.4
1,740,956 + -0.4
1,740,984 + +1.1
1,741,015 + -1.0
1,741,022 - +0.7

Or see this region's nucleotide sequence