Experiment: PYE with Dimethyl Sulfoxide 0.4 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01616 and CCNA_01617 overlap by 1 nucleotides CCNA_01617 and CCNA_01618 are separated by 47 nucleotides CCNA_01618 and CCNA_01619 are separated by 2 nucleotides CCNA_01619 and CCNA_01620 are separated by 49 nucleotides
CCNA_01616: CCNA_01616 - rod shape-determining protein RodA, at 1,737,982 to 1,739,139
_01616
CCNA_01617: CCNA_01617 - acetyltransferase, at 1,739,139 to 1,739,690
_01617
CCNA_01618: CCNA_01618 - uracil-DNA glycosylase, at 1,739,738 to 1,740,415
_01618
CCNA_01619: CCNA_01619 - NYN domain protein, at 1,740,418 to 1,741,014
_01619
CCNA_01620: CCNA_01620 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase, at 1,741,064 to 1,741,558
_01620
Position (kb)
1739
1740
1741 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1739.115 kb on - strand at 1739.115 kb on - strand at 1739.133 kb on + strand at 1739.133 kb on + strand at 1739.141 kb on - strand at 1739.224 kb on - strand, within CCNA_01617 at 1739.242 kb on + strand, within CCNA_01617 at 1739.242 kb on + strand, within CCNA_01617 at 1739.250 kb on - strand, within CCNA_01617 at 1739.266 kb on + strand, within CCNA_01617 at 1739.272 kb on + strand, within CCNA_01617 at 1739.277 kb on + strand, within CCNA_01617 at 1739.314 kb on - strand, within CCNA_01617 at 1739.321 kb on - strand, within CCNA_01617 at 1739.328 kb on + strand, within CCNA_01617 at 1739.334 kb on + strand, within CCNA_01617 at 1739.403 kb on - strand, within CCNA_01617 at 1739.466 kb on + strand, within CCNA_01617 at 1739.466 kb on + strand, within CCNA_01617 at 1739.474 kb on - strand, within CCNA_01617 at 1739.474 kb on - strand, within CCNA_01617 at 1739.474 kb on - strand, within CCNA_01617 at 1739.476 kb on + strand, within CCNA_01617 at 1739.480 kb on - strand, within CCNA_01617 at 1739.560 kb on - strand, within CCNA_01617 at 1739.597 kb on + strand, within CCNA_01617 at 1739.625 kb on + strand, within CCNA_01617 at 1739.652 kb on - strand at 1739.654 kb on - strand at 1739.721 kb on - strand at 1739.743 kb on - strand at 1739.757 kb on - strand at 1739.760 kb on + strand at 1739.760 kb on + strand at 1739.768 kb on - strand at 1739.768 kb on - strand at 1739.768 kb on - strand at 1739.768 kb on - strand at 1739.768 kb on - strand at 1739.768 kb on - strand at 1739.768 kb on - strand at 1739.768 kb on - strand at 1740.076 kb on + strand, within CCNA_01618 at 1740.159 kb on - strand, within CCNA_01618 at 1740.409 kb on + strand at 1740.411 kb on + strand at 1740.411 kb on + strand at 1740.416 kb on + strand at 1740.416 kb on + strand at 1740.416 kb on + strand at 1740.416 kb on + strand at 1740.424 kb on - strand at 1740.429 kb on - strand at 1740.429 kb on - strand at 1740.449 kb on + strand at 1740.460 kb on + strand at 1740.552 kb on + strand, within CCNA_01619 at 1740.596 kb on + strand, within CCNA_01619 at 1740.626 kb on + strand, within CCNA_01619 at 1740.626 kb on + strand, within CCNA_01619 at 1740.634 kb on - strand, within CCNA_01619 at 1740.656 kb on + strand, within CCNA_01619 at 1740.656 kb on + strand, within CCNA_01619 at 1740.729 kb on - strand, within CCNA_01619 at 1740.761 kb on - strand, within CCNA_01619 at 1740.762 kb on - strand, within CCNA_01619 at 1740.787 kb on - strand, within CCNA_01619 at 1740.789 kb on + strand, within CCNA_01619 at 1740.797 kb on - strand, within CCNA_01619 at 1740.797 kb on - strand, within CCNA_01619 at 1740.880 kb on + strand, within CCNA_01619 at 1740.888 kb on - strand, within CCNA_01619 at 1740.930 kb on + strand, within CCNA_01619 at 1740.945 kb on - strand, within CCNA_01619 at 1740.956 kb on + strand at 1740.984 kb on + strand at 1741.015 kb on + strand at 1741.022 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 % remove 1,739,115 - -0.1 1,739,115 - -1.3 1,739,133 + +0.1 1,739,133 + +0.9 1,739,141 - -1.4 1,739,224 - CCNA_01617 0.15 -1.5 1,739,242 + CCNA_01617 0.19 -0.1 1,739,242 + CCNA_01617 0.19 +0.2 1,739,250 - CCNA_01617 0.20 -0.8 1,739,266 + CCNA_01617 0.23 +0.5 1,739,272 + CCNA_01617 0.24 +0.4 1,739,277 + CCNA_01617 0.25 -0.1 1,739,314 - CCNA_01617 0.32 +0.8 1,739,321 - CCNA_01617 0.33 +0.1 1,739,328 + CCNA_01617 0.34 -0.3 1,739,334 + CCNA_01617 0.35 +0.4 1,739,403 - CCNA_01617 0.48 -0.1 1,739,466 + CCNA_01617 0.59 +0.3 1,739,466 + CCNA_01617 0.59 -0.0 1,739,474 - CCNA_01617 0.61 -0.3 1,739,474 - CCNA_01617 0.61 +0.3 1,739,474 - CCNA_01617 0.61 -0.0 1,739,476 + CCNA_01617 0.61 +0.2 1,739,480 - CCNA_01617 0.62 -0.4 1,739,560 - CCNA_01617 0.76 +0.6 1,739,597 + CCNA_01617 0.83 +0.0 1,739,625 + CCNA_01617 0.88 -0.5 1,739,652 - -1.1 1,739,654 - -0.4 1,739,721 - +1.1 1,739,743 - +0.8 1,739,757 - +1.4 1,739,760 + -1.8 1,739,760 + +0.3 1,739,768 - +0.3 1,739,768 - +0.3 1,739,768 - +0.1 1,739,768 - +0.3 1,739,768 - +1.9 1,739,768 - +0.3 1,739,768 - +0.5 1,739,768 - +0.5 1,740,076 + CCNA_01618 0.50 +0.9 1,740,159 - CCNA_01618 0.62 +0.9 1,740,409 + -0.5 1,740,411 + -1.4 1,740,411 + -0.1 1,740,416 + -0.1 1,740,416 + -0.4 1,740,416 + -0.9 1,740,416 + +0.3 1,740,424 - -0.1 1,740,429 - +0.2 1,740,429 - +0.1 1,740,449 + +0.9 1,740,460 + +0.5 1,740,552 + CCNA_01619 0.22 +0.2 1,740,596 + CCNA_01619 0.30 +0.1 1,740,626 + CCNA_01619 0.35 +0.7 1,740,626 + CCNA_01619 0.35 +1.1 1,740,634 - CCNA_01619 0.36 -1.3 1,740,656 + CCNA_01619 0.40 +0.3 1,740,656 + CCNA_01619 0.40 +0.1 1,740,729 - CCNA_01619 0.52 +0.4 1,740,761 - CCNA_01619 0.57 +0.4 1,740,762 - CCNA_01619 0.58 +0.4 1,740,787 - CCNA_01619 0.62 +0.3 1,740,789 + CCNA_01619 0.62 +0.1 1,740,797 - CCNA_01619 0.63 +0.9 1,740,797 - CCNA_01619 0.63 +0.6 1,740,880 + CCNA_01619 0.77 +0.7 1,740,888 - CCNA_01619 0.79 +0.6 1,740,930 + CCNA_01619 0.86 -0.5 1,740,945 - CCNA_01619 0.88 +0.4 1,740,956 + -0.4 1,740,984 + +1.1 1,741,015 + -1.0 1,741,022 - +0.7
Or see this region's nucleotide sequence