Experiment: PYE with Dimethyl Sulfoxide 0.4 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01348 and CCNA_01349 are separated by 272 nucleotides CCNA_01349 and CCNA_01350 are separated by 14 nucleotides CCNA_01350 and CCNA_01351 are separated by 127 nucleotides CCNA_01351 and CCNA_01352 are separated by 0 nucleotides
CCNA_01348: CCNA_01348 - hypothetical protein, at 1,461,471 to 1,462,034
_01348
CCNA_01349: CCNA_01349 - transposase, at 1,462,307 to 1,462,717
_01349
CCNA_01350: CCNA_01350 - transposase DDE domain protein, at 1,462,732 to 1,463,100
_01350
CCNA_01351: CCNA_01351 - two-component response regulator protein, at 1,463,228 to 1,463,956
_01351
CCNA_01352: CCNA_01352 - two component sensor histidine kinase, at 1,463,957 to 1,465,588
_01352
Position (kb)
1462
1463
1464 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1461.737 kb on - strand, within CCNA_01348 at 1461.762 kb on + strand, within CCNA_01348 at 1461.770 kb on - strand, within CCNA_01348 at 1461.782 kb on - strand, within CCNA_01348 at 1461.821 kb on + strand, within CCNA_01348 at 1461.846 kb on - strand, within CCNA_01348 at 1461.857 kb on - strand, within CCNA_01348 at 1461.888 kb on + strand, within CCNA_01348 at 1461.889 kb on - strand, within CCNA_01348 at 1461.934 kb on - strand, within CCNA_01348 at 1461.953 kb on + strand, within CCNA_01348 at 1461.953 kb on + strand, within CCNA_01348 at 1461.996 kb on + strand at 1461.999 kb on + strand at 1462.007 kb on - strand at 1462.011 kb on + strand at 1462.015 kb on - strand at 1462.016 kb on + strand at 1462.019 kb on - strand at 1462.024 kb on - strand at 1462.024 kb on - strand at 1462.056 kb on - strand at 1462.057 kb on + strand at 1462.061 kb on + strand at 1462.061 kb on + strand at 1462.061 kb on + strand at 1462.065 kb on - strand at 1462.092 kb on + strand at 1462.112 kb on + strand at 1462.160 kb on + strand at 1462.168 kb on - strand at 1462.168 kb on - strand at 1462.231 kb on - strand at 1462.233 kb on + strand at 1462.233 kb on + strand at 1462.241 kb on - strand at 1462.270 kb on - strand at 1462.270 kb on - strand at 1462.270 kb on - strand at 1462.287 kb on - strand at 1463.159 kb on - strand at 1463.342 kb on + strand, within CCNA_01351 at 1463.371 kb on - strand, within CCNA_01351 at 1463.371 kb on - strand, within CCNA_01351 at 1463.385 kb on + strand, within CCNA_01351 at 1463.385 kb on + strand, within CCNA_01351 at 1463.385 kb on - strand, within CCNA_01351 at 1463.414 kb on + strand, within CCNA_01351 at 1463.422 kb on - strand, within CCNA_01351 at 1463.444 kb on - strand, within CCNA_01351 at 1463.444 kb on - strand, within CCNA_01351 at 1463.446 kb on + strand, within CCNA_01351 at 1463.474 kb on + strand, within CCNA_01351 at 1463.628 kb on + strand, within CCNA_01351 at 1463.677 kb on + strand, within CCNA_01351 at 1463.683 kb on - strand, within CCNA_01351 at 1463.685 kb on - strand, within CCNA_01351 at 1463.693 kb on - strand, within CCNA_01351 at 1463.702 kb on + strand, within CCNA_01351 at 1463.712 kb on + strand, within CCNA_01351 at 1463.714 kb on + strand, within CCNA_01351 at 1463.749 kb on + strand, within CCNA_01351 at 1463.757 kb on - strand, within CCNA_01351 at 1463.842 kb on + strand, within CCNA_01351 at 1463.850 kb on - strand, within CCNA_01351 at 1463.860 kb on - strand, within CCNA_01351 at 1463.860 kb on - strand, within CCNA_01351 at 1463.869 kb on - strand, within CCNA_01351 at 1463.879 kb on - strand, within CCNA_01351 at 1463.987 kb on - strand at 1463.998 kb on + strand at 1463.999 kb on + strand at 1463.999 kb on + strand at 1464.004 kb on + strand at 1464.007 kb on - strand at 1464.007 kb on - strand at 1464.024 kb on - strand at 1464.040 kb on + strand at 1464.043 kb on - strand at 1464.048 kb on - strand at 1464.048 kb on - strand at 1464.088 kb on + strand at 1464.088 kb on + strand at 1464.088 kb on + strand at 1464.096 kb on - strand at 1464.096 kb on - strand at 1464.096 kb on - strand at 1464.096 kb on - strand at 1464.096 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 % remove 1,461,737 - CCNA_01348 0.47 -0.0 1,461,762 + CCNA_01348 0.52 +0.9 1,461,770 - CCNA_01348 0.53 +0.6 1,461,782 - CCNA_01348 0.55 -0.2 1,461,821 + CCNA_01348 0.62 -0.9 1,461,846 - CCNA_01348 0.66 +0.0 1,461,857 - CCNA_01348 0.68 +0.3 1,461,888 + CCNA_01348 0.74 +0.5 1,461,889 - CCNA_01348 0.74 -0.4 1,461,934 - CCNA_01348 0.82 -0.7 1,461,953 + CCNA_01348 0.85 +0.1 1,461,953 + CCNA_01348 0.85 -0.1 1,461,996 + +0.3 1,461,999 + +0.5 1,462,007 - -0.5 1,462,011 + +1.1 1,462,015 - +1.4 1,462,016 + -0.0 1,462,019 - +0.1 1,462,024 - -0.9 1,462,024 - -0.1 1,462,056 - +0.2 1,462,057 + +0.3 1,462,061 + +0.5 1,462,061 + +0.3 1,462,061 + -0.0 1,462,065 - -0.4 1,462,092 + -1.0 1,462,112 + -0.3 1,462,160 + -1.8 1,462,168 - +0.7 1,462,168 - +1.0 1,462,231 - +0.7 1,462,233 + -0.1 1,462,233 + -0.8 1,462,241 - +0.8 1,462,270 - -1.5 1,462,270 - +0.5 1,462,270 - -0.2 1,462,287 - -1.6 1,463,159 - -0.4 1,463,342 + CCNA_01351 0.16 +0.1 1,463,371 - CCNA_01351 0.20 +0.0 1,463,371 - CCNA_01351 0.20 +0.5 1,463,385 + CCNA_01351 0.22 -0.4 1,463,385 + CCNA_01351 0.22 -0.0 1,463,385 - CCNA_01351 0.22 +0.2 1,463,414 + CCNA_01351 0.26 -0.7 1,463,422 - CCNA_01351 0.27 +0.4 1,463,444 - CCNA_01351 0.30 +0.2 1,463,444 - CCNA_01351 0.30 -0.8 1,463,446 + CCNA_01351 0.30 -0.4 1,463,474 + CCNA_01351 0.34 -0.2 1,463,628 + CCNA_01351 0.55 +1.1 1,463,677 + CCNA_01351 0.62 -1.0 1,463,683 - CCNA_01351 0.62 -1.1 1,463,685 - CCNA_01351 0.63 +0.3 1,463,693 - CCNA_01351 0.64 +0.8 1,463,702 + CCNA_01351 0.65 +0.2 1,463,712 + CCNA_01351 0.66 -0.8 1,463,714 + CCNA_01351 0.67 -0.1 1,463,749 + CCNA_01351 0.71 -0.8 1,463,757 - CCNA_01351 0.73 +0.9 1,463,842 + CCNA_01351 0.84 -0.5 1,463,850 - CCNA_01351 0.85 +0.0 1,463,860 - CCNA_01351 0.87 +2.0 1,463,860 - CCNA_01351 0.87 +0.9 1,463,869 - CCNA_01351 0.88 -0.4 1,463,879 - CCNA_01351 0.89 +0.1 1,463,987 - +1.2 1,463,998 + -0.3 1,463,999 + -0.8 1,463,999 + -0.8 1,464,004 + -0.1 1,464,007 - +1.2 1,464,007 - +0.3 1,464,024 - -0.5 1,464,040 + -0.1 1,464,043 - +0.3 1,464,048 - -1.0 1,464,048 - +0.1 1,464,088 + +0.6 1,464,088 + +0.8 1,464,088 + +0.1 1,464,096 - +0.3 1,464,096 - +0.1 1,464,096 - +0.4 1,464,096 - +0.7 1,464,096 - +0.6
Or see this region's nucleotide sequence