Experiment: PYE with Dimethyl Sulfoxide 0.4 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01253 and CCNA_01254 overlap by 1 nucleotides CCNA_01254 and CCNA_01255 are separated by 100 nucleotides CCNA_01255 and CCNA_01256 are separated by 437 nucleotides
CCNA_01253: CCNA_01253 - dihydrodipicolinate synthase, at 1,381,534 to 1,382,418
_01253
CCNA_01254: CCNA_01254 - SsrA-binding protein, at 1,382,418 to 1,382,876
_01254
CCNA_01255: CCNA_01255 - hypothetical protein, at 1,382,977 to 1,383,126
_01255
CCNA_01256: CCNA_01256 - hypothetical protein, at 1,383,564 to 1,384,559
_01256
Position (kb)
1382
1383
1384 Strain fitness (log2 ratio)
-2
-1
0
1 at 1382.407 kb on + strand at 1382.412 kb on + strand at 1382.842 kb on + strand at 1382.860 kb on - strand at 1382.889 kb on + strand at 1382.889 kb on + strand at 1382.897 kb on - strand at 1382.979 kb on + strand at 1382.987 kb on - strand at 1382.989 kb on + strand at 1383.057 kb on - strand, within CCNA_01255 at 1383.058 kb on - strand, within CCNA_01255 at 1383.062 kb on + strand, within CCNA_01255 at 1383.082 kb on + strand, within CCNA_01255 at 1383.082 kb on + strand, within CCNA_01255 at 1383.083 kb on + strand, within CCNA_01255 at 1383.091 kb on - strand, within CCNA_01255 at 1383.102 kb on - strand, within CCNA_01255 at 1383.254 kb on - strand at 1383.297 kb on + strand at 1383.416 kb on + strand at 1383.444 kb on - strand at 1383.544 kb on + strand at 1383.551 kb on + strand at 1383.559 kb on - strand at 1383.562 kb on + strand at 1383.573 kb on + strand at 1383.587 kb on + strand at 1383.595 kb on - strand at 1383.601 kb on + strand at 1383.613 kb on + strand at 1383.614 kb on - strand at 1383.643 kb on + strand at 1383.664 kb on + strand, within CCNA_01256 at 1383.676 kb on + strand, within CCNA_01256 at 1383.681 kb on + strand, within CCNA_01256 at 1383.730 kb on - strand, within CCNA_01256 at 1383.754 kb on - strand, within CCNA_01256 at 1383.756 kb on + strand, within CCNA_01256 at 1383.764 kb on - strand, within CCNA_01256 at 1383.802 kb on + strand, within CCNA_01256 at 1383.802 kb on + strand, within CCNA_01256 at 1383.810 kb on - strand, within CCNA_01256 at 1383.810 kb on - strand, within CCNA_01256 at 1383.810 kb on - strand, within CCNA_01256 at 1383.866 kb on - strand, within CCNA_01256 at 1383.881 kb on + strand, within CCNA_01256 at 1383.891 kb on + strand, within CCNA_01256 at 1383.898 kb on + strand, within CCNA_01256 at 1383.919 kb on + strand, within CCNA_01256 at 1383.927 kb on - strand, within CCNA_01256 at 1383.944 kb on + strand, within CCNA_01256 at 1383.944 kb on + strand, within CCNA_01256 at 1383.976 kb on + strand, within CCNA_01256 at 1383.976 kb on + strand, within CCNA_01256 at 1383.979 kb on - strand, within CCNA_01256 at 1383.993 kb on + strand, within CCNA_01256 at 1384.041 kb on + strand, within CCNA_01256 at 1384.043 kb on + strand, within CCNA_01256 at 1384.060 kb on - strand, within CCNA_01256 at 1384.069 kb on + strand, within CCNA_01256 at 1384.069 kb on + strand, within CCNA_01256 at 1384.077 kb on - strand, within CCNA_01256 at 1384.079 kb on - strand, within CCNA_01256 at 1384.089 kb on - strand, within CCNA_01256 at 1384.112 kb on + strand, within CCNA_01256 at 1384.120 kb on + strand, within CCNA_01256
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 % remove 1,382,407 + +0.4 1,382,412 + +1.1 1,382,842 + +0.4 1,382,860 - +1.3 1,382,889 + +0.1 1,382,889 + +0.5 1,382,897 - -0.0 1,382,979 + -0.0 1,382,987 - +0.4 1,382,989 + +0.3 1,383,057 - CCNA_01255 0.53 +0.3 1,383,058 - CCNA_01255 0.54 -0.1 1,383,062 + CCNA_01255 0.57 -0.1 1,383,082 + CCNA_01255 0.70 -0.8 1,383,082 + CCNA_01255 0.70 +0.3 1,383,083 + CCNA_01255 0.71 -0.4 1,383,091 - CCNA_01255 0.76 -0.3 1,383,102 - CCNA_01255 0.83 -0.1 1,383,254 - -0.4 1,383,297 + -0.2 1,383,416 + +0.6 1,383,444 - -1.6 1,383,544 + -1.0 1,383,551 + -0.1 1,383,559 - +1.1 1,383,562 + -0.9 1,383,573 + -1.7 1,383,587 + -0.3 1,383,595 - -0.4 1,383,601 + -0.4 1,383,613 + +1.2 1,383,614 - -0.9 1,383,643 + -1.2 1,383,664 + CCNA_01256 0.10 -1.0 1,383,676 + CCNA_01256 0.11 +0.0 1,383,681 + CCNA_01256 0.12 +0.5 1,383,730 - CCNA_01256 0.17 +0.8 1,383,754 - CCNA_01256 0.19 +0.5 1,383,756 + CCNA_01256 0.19 +0.8 1,383,764 - CCNA_01256 0.20 +0.5 1,383,802 + CCNA_01256 0.24 -0.5 1,383,802 + CCNA_01256 0.24 -0.3 1,383,810 - CCNA_01256 0.25 -0.1 1,383,810 - CCNA_01256 0.25 +0.1 1,383,810 - CCNA_01256 0.25 +1.6 1,383,866 - CCNA_01256 0.30 -0.7 1,383,881 + CCNA_01256 0.32 -0.3 1,383,891 + CCNA_01256 0.33 -0.3 1,383,898 + CCNA_01256 0.34 -0.6 1,383,919 + CCNA_01256 0.36 -1.9 1,383,927 - CCNA_01256 0.36 -2.2 1,383,944 + CCNA_01256 0.38 -2.0 1,383,944 + CCNA_01256 0.38 -2.2 1,383,976 + CCNA_01256 0.41 -0.4 1,383,976 + CCNA_01256 0.41 +0.0 1,383,979 - CCNA_01256 0.42 -0.5 1,383,993 + CCNA_01256 0.43 -0.4 1,384,041 + CCNA_01256 0.48 -0.8 1,384,043 + CCNA_01256 0.48 -0.9 1,384,060 - CCNA_01256 0.50 +0.7 1,384,069 + CCNA_01256 0.51 -0.6 1,384,069 + CCNA_01256 0.51 -0.4 1,384,077 - CCNA_01256 0.52 -0.0 1,384,079 - CCNA_01256 0.52 -0.0 1,384,089 - CCNA_01256 0.53 -0.0 1,384,112 + CCNA_01256 0.55 -1.4 1,384,120 + CCNA_01256 0.56 -0.3
Or see this region's nucleotide sequence