Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00905

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00904 and CCNA_00905 are separated by 28 nucleotidesCCNA_00905 and CCNA_00906 are separated by 69 nucleotidesCCNA_00906 and CCNA_00907 overlap by 4 nucleotides CCNA_00904: CCNA_00904 - inositol ABC transport system, permease protein IatP, at 984,482 to 985,480 _00904 CCNA_00905: CCNA_00905 - exonuclease-endonuclease-phosphatase (EEP1) protein, at 985,509 to 986,396 _00905 CCNA_00906: CCNA_00906 - hypothetical protein, at 986,466 to 987,380 _00906 CCNA_00907: CCNA_00907 - hypothetical protein, at 987,377 to 988,105 _00907 Position (kb) 985 986 987Strain fitness (log2 ratio) -2 -1 0 1at 984.523 kb on + strandat 984.542 kb on + strandat 984.574 kb on - strandat 984.595 kb on + strand, within CCNA_00904at 984.628 kb on + strand, within CCNA_00904at 984.635 kb on + strand, within CCNA_00904at 984.656 kb on - strand, within CCNA_00904at 984.683 kb on + strand, within CCNA_00904at 984.683 kb on + strand, within CCNA_00904at 984.683 kb on + strand, within CCNA_00904at 984.689 kb on + strand, within CCNA_00904at 984.691 kb on - strand, within CCNA_00904at 984.730 kb on - strand, within CCNA_00904at 984.761 kb on + strand, within CCNA_00904at 984.777 kb on - strand, within CCNA_00904at 984.817 kb on + strand, within CCNA_00904at 984.827 kb on + strand, within CCNA_00904at 984.827 kb on + strand, within CCNA_00904at 984.849 kb on - strand, within CCNA_00904at 984.850 kb on - strand, within CCNA_00904at 984.859 kb on + strand, within CCNA_00904at 984.859 kb on + strand, within CCNA_00904at 984.859 kb on + strand, within CCNA_00904at 984.862 kb on - strand, within CCNA_00904at 984.865 kb on + strand, within CCNA_00904at 984.866 kb on + strand, within CCNA_00904at 984.867 kb on - strand, within CCNA_00904at 984.867 kb on - strand, within CCNA_00904at 984.867 kb on - strand, within CCNA_00904at 984.867 kb on - strand, within CCNA_00904at 984.927 kb on - strand, within CCNA_00904at 984.993 kb on - strand, within CCNA_00904at 984.998 kb on - strand, within CCNA_00904at 984.998 kb on - strand, within CCNA_00904at 985.012 kb on + strand, within CCNA_00904at 985.012 kb on + strand, within CCNA_00904at 985.035 kb on + strand, within CCNA_00904at 985.035 kb on + strand, within CCNA_00904at 985.035 kb on + strand, within CCNA_00904at 985.035 kb on + strand, within CCNA_00904at 985.045 kb on + strand, within CCNA_00904at 985.067 kb on + strand, within CCNA_00904at 985.072 kb on + strand, within CCNA_00904at 985.072 kb on + strand, within CCNA_00904at 985.080 kb on - strand, within CCNA_00904at 985.080 kb on - strand, within CCNA_00904at 985.080 kb on - strand, within CCNA_00904at 985.085 kb on - strand, within CCNA_00904at 985.096 kb on + strand, within CCNA_00904at 985.096 kb on + strand, within CCNA_00904at 985.097 kb on + strand, within CCNA_00904at 985.104 kb on - strand, within CCNA_00904at 985.108 kb on + strand, within CCNA_00904at 985.117 kb on + strand, within CCNA_00904at 985.117 kb on + strand, within CCNA_00904at 985.125 kb on - strand, within CCNA_00904at 985.167 kb on + strand, within CCNA_00904at 985.209 kb on - strand, within CCNA_00904at 985.257 kb on + strand, within CCNA_00904at 985.257 kb on + strand, within CCNA_00904at 985.265 kb on - strand, within CCNA_00904at 985.379 kb on + strand, within CCNA_00904at 985.426 kb on + strandat 985.429 kb on - strandat 985.447 kb on - strandat 985.447 kb on - strandat 985.482 kb on - strandat 985.482 kb on - strandat 985.482 kb on - strandat 985.492 kb on + strandat 985.497 kb on + strandat 985.497 kb on + strandat 985.497 kb on + strandat 985.505 kb on - strandat 985.505 kb on - strandat 985.507 kb on + strandat 985.507 kb on + strandat 985.507 kb on + strandat 985.507 kb on + strandat 985.507 kb on + strandat 985.507 kb on + strandat 985.507 kb on + strandat 985.507 kb on + strandat 985.507 kb on + strandat 985.507 kb on + strandat 985.507 kb on + strandat 985.507 kb on + strandat 985.507 kb on + strandat 985.507 kb on + strandat 985.507 kb on + strandat 985.507 kb on + strandat 985.507 kb on + strandat 985.507 kb on + strandat 985.513 kb on + strandat 985.513 kb on + strandat 985.515 kb on - strandat 985.515 kb on - strandat 985.515 kb on - strandat 985.515 kb on - strandat 985.515 kb on - strandat 985.515 kb on - strandat 985.515 kb on - strandat 985.515 kb on - strandat 985.544 kb on + strandat 985.549 kb on + strandat 985.557 kb on - strandat 985.619 kb on - strand, within CCNA_00905at 985.673 kb on + strand, within CCNA_00905at 985.696 kb on - strand, within CCNA_00905at 985.737 kb on + strand, within CCNA_00905at 985.754 kb on - strand, within CCNA_00905at 985.780 kb on - strand, within CCNA_00905at 985.800 kb on + strand, within CCNA_00905at 985.806 kb on - strand, within CCNA_00905at 985.837 kb on - strand, within CCNA_00905at 985.854 kb on + strand, within CCNA_00905at 985.854 kb on + strand, within CCNA_00905at 985.854 kb on + strand, within CCNA_00905at 985.862 kb on - strand, within CCNA_00905at 985.881 kb on - strand, within CCNA_00905at 985.896 kb on + strand, within CCNA_00905at 985.899 kb on - strand, within CCNA_00905at 985.924 kb on - strand, within CCNA_00905at 985.938 kb on - strand, within CCNA_00905at 985.974 kb on - strand, within CCNA_00905at 985.979 kb on - strand, within CCNA_00905at 985.983 kb on + strand, within CCNA_00905at 986.001 kb on + strand, within CCNA_00905at 986.002 kb on - strand, within CCNA_00905at 986.024 kb on + strand, within CCNA_00905at 986.029 kb on + strand, within CCNA_00905at 986.029 kb on + strand, within CCNA_00905at 986.029 kb on + strand, within CCNA_00905at 986.034 kb on + strand, within CCNA_00905at 986.037 kb on - strand, within CCNA_00905at 986.037 kb on - strand, within CCNA_00905at 986.037 kb on - strand, within CCNA_00905at 986.044 kb on + strand, within CCNA_00905at 986.052 kb on - strand, within CCNA_00905at 986.121 kb on - strand, within CCNA_00905at 986.128 kb on + strand, within CCNA_00905at 986.136 kb on - strand, within CCNA_00905at 986.221 kb on + strand, within CCNA_00905at 986.229 kb on - strand, within CCNA_00905at 986.310 kb on - strandat 986.380 kb on - strandat 986.391 kb on + strandat 986.399 kb on - strandat 986.399 kb on - strandat 986.419 kb on + strandat 986.426 kb on + strandat 986.427 kb on - strandat 986.464 kb on + strandat 986.471 kb on - strandat 986.488 kb on - strandat 986.527 kb on - strandat 986.542 kb on - strandat 986.561 kb on + strand, within CCNA_00906at 986.570 kb on - strand, within CCNA_00906at 986.570 kb on - strand, within CCNA_00906at 986.601 kb on + strand, within CCNA_00906at 986.601 kb on + strand, within CCNA_00906at 986.609 kb on - strand, within CCNA_00906at 986.610 kb on - strand, within CCNA_00906at 986.674 kb on + strand, within CCNA_00906at 986.697 kb on - strand, within CCNA_00906at 986.769 kb on - strand, within CCNA_00906at 986.823 kb on - strand, within CCNA_00906at 986.832 kb on + strand, within CCNA_00906at 986.899 kb on - strand, within CCNA_00906at 986.905 kb on + strand, within CCNA_00906at 986.976 kb on - strand, within CCNA_00906at 986.980 kb on - strand, within CCNA_00906at 986.980 kb on - strand, within CCNA_00906at 986.980 kb on - strand, within CCNA_00906at 987.001 kb on + strand, within CCNA_00906at 987.009 kb on - strand, within CCNA_00906at 987.009 kb on - strand, within CCNA_00906at 987.022 kb on + strand, within CCNA_00906at 987.022 kb on + strand, within CCNA_00906at 987.047 kb on - strand, within CCNA_00906at 987.074 kb on + strand, within CCNA_00906at 987.075 kb on + strand, within CCNA_00906at 987.082 kb on - strand, within CCNA_00906at 987.087 kb on + strand, within CCNA_00906at 987.087 kb on + strand, within CCNA_00906at 987.118 kb on + strand, within CCNA_00906at 987.130 kb on - strand, within CCNA_00906at 987.135 kb on - strand, within CCNA_00906at 987.135 kb on - strand, within CCNA_00906at 987.135 kb on - strand, within CCNA_00906at 987.142 kb on + strand, within CCNA_00906at 987.149 kb on + strand, within CCNA_00906at 987.152 kb on - strand, within CCNA_00906at 987.152 kb on - strand, within CCNA_00906at 987.164 kb on + strand, within CCNA_00906at 987.231 kb on - strand, within CCNA_00906at 987.231 kb on - strand, within CCNA_00906at 987.231 kb on - strand, within CCNA_00906at 987.259 kb on + strand, within CCNA_00906at 987.259 kb on + strand, within CCNA_00906at 987.261 kb on - strand, within CCNA_00906at 987.267 kb on - strand, within CCNA_00906at 987.267 kb on - strand, within CCNA_00906at 987.267 kb on - strand, within CCNA_00906at 987.267 kb on - strand, within CCNA_00906at 987.269 kb on + strand, within CCNA_00906at 987.269 kb on - strand, within CCNA_00906at 987.275 kb on + strand, within CCNA_00906at 987.282 kb on - strand, within CCNA_00906at 987.305 kb on + strandat 987.305 kb on + strandat 987.311 kb on + strandat 987.339 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
remove
984,523 + +0.0
984,542 + +0.6
984,574 - -0.6
984,595 + CCNA_00904 0.11 +0.8
984,628 + CCNA_00904 0.15 -0.3
984,635 + CCNA_00904 0.15 -0.1
984,656 - CCNA_00904 0.17 -0.6
984,683 + CCNA_00904 0.20 -0.1
984,683 + CCNA_00904 0.20 -0.1
984,683 + CCNA_00904 0.20 -0.5
984,689 + CCNA_00904 0.21 +0.1
984,691 - CCNA_00904 0.21 -0.8
984,730 - CCNA_00904 0.25 -1.2
984,761 + CCNA_00904 0.28 +1.0
984,777 - CCNA_00904 0.30 +0.0
984,817 + CCNA_00904 0.34 -0.3
984,827 + CCNA_00904 0.35 -0.4
984,827 + CCNA_00904 0.35 +0.5
984,849 - CCNA_00904 0.37 +0.4
984,850 - CCNA_00904 0.37 -0.1
984,859 + CCNA_00904 0.38 +0.1
984,859 + CCNA_00904 0.38 -0.4
984,859 + CCNA_00904 0.38 -0.0
984,862 - CCNA_00904 0.38 -1.1
984,865 + CCNA_00904 0.38 +0.3
984,866 + CCNA_00904 0.38 -1.4
984,867 - CCNA_00904 0.39 +0.7
984,867 - CCNA_00904 0.39 -2.1
984,867 - CCNA_00904 0.39 -0.6
984,867 - CCNA_00904 0.39 -1.0
984,927 - CCNA_00904 0.45 +0.0
984,993 - CCNA_00904 0.51 +0.2
984,998 - CCNA_00904 0.52 +0.2
984,998 - CCNA_00904 0.52 +0.2
985,012 + CCNA_00904 0.53 -0.6
985,012 + CCNA_00904 0.53 -0.2
985,035 + CCNA_00904 0.55 +0.3
985,035 + CCNA_00904 0.55 -0.9
985,035 + CCNA_00904 0.55 -0.0
985,035 + CCNA_00904 0.55 -0.2
985,045 + CCNA_00904 0.56 -0.4
985,067 + CCNA_00904 0.59 +0.5
985,072 + CCNA_00904 0.59 -0.0
985,072 + CCNA_00904 0.59 -0.6
985,080 - CCNA_00904 0.60 -0.7
985,080 - CCNA_00904 0.60 -1.6
985,080 - CCNA_00904 0.60 -0.9
985,085 - CCNA_00904 0.60 +0.4
985,096 + CCNA_00904 0.61 -1.3
985,096 + CCNA_00904 0.61 -0.4
985,097 + CCNA_00904 0.62 -0.3
985,104 - CCNA_00904 0.62 -0.5
985,108 + CCNA_00904 0.63 -0.6
985,117 + CCNA_00904 0.64 +0.9
985,117 + CCNA_00904 0.64 -0.2
985,125 - CCNA_00904 0.64 -0.5
985,167 + CCNA_00904 0.69 +0.0
985,209 - CCNA_00904 0.73 -0.9
985,257 + CCNA_00904 0.78 -0.6
985,257 + CCNA_00904 0.78 +0.1
985,265 - CCNA_00904 0.78 +0.5
985,379 + CCNA_00904 0.90 -0.1
985,426 + +1.7
985,429 - +0.7
985,447 - +0.9
985,447 - +1.2
985,482 - -0.5
985,482 - +0.3
985,482 - -0.4
985,492 + +0.3
985,497 + +0.5
985,497 + +0.4
985,497 + +0.3
985,505 - -0.7
985,505 - +0.9
985,507 + +0.7
985,507 + +0.1
985,507 + +1.1
985,507 + -0.1
985,507 + +0.2
985,507 + +0.1
985,507 + +0.8
985,507 + +0.1
985,507 + -0.1
985,507 + +0.2
985,507 + +1.5
985,507 + +0.8
985,507 + +0.4
985,507 + +0.1
985,507 + +0.1
985,507 + +0.6
985,507 + -0.0
985,507 + +0.2
985,513 + -0.0
985,513 + -0.0
985,515 - -0.1
985,515 - -2.3
985,515 - -2.0
985,515 - +0.3
985,515 - +0.8
985,515 - +0.1
985,515 - +0.3
985,515 - +0.2
985,544 + +0.7
985,549 + +0.3
985,557 - -1.2
985,619 - CCNA_00905 0.12 +0.6
985,673 + CCNA_00905 0.18 +0.2
985,696 - CCNA_00905 0.21 +1.5
985,737 + CCNA_00905 0.26 -0.2
985,754 - CCNA_00905 0.28 -0.0
985,780 - CCNA_00905 0.31 +0.0
985,800 + CCNA_00905 0.33 +0.3
985,806 - CCNA_00905 0.33 -0.4
985,837 - CCNA_00905 0.37 +0.7
985,854 + CCNA_00905 0.39 -0.3
985,854 + CCNA_00905 0.39 +0.8
985,854 + CCNA_00905 0.39 +0.4
985,862 - CCNA_00905 0.40 +0.4
985,881 - CCNA_00905 0.42 -0.2
985,896 + CCNA_00905 0.44 +0.2
985,899 - CCNA_00905 0.44 -0.1
985,924 - CCNA_00905 0.47 +0.2
985,938 - CCNA_00905 0.48 -0.5
985,974 - CCNA_00905 0.52 -1.2
985,979 - CCNA_00905 0.53 -0.6
985,983 + CCNA_00905 0.53 -0.3
986,001 + CCNA_00905 0.55 -0.6
986,002 - CCNA_00905 0.56 -0.5
986,024 + CCNA_00905 0.58 -0.9
986,029 + CCNA_00905 0.59 +0.5
986,029 + CCNA_00905 0.59 -0.6
986,029 + CCNA_00905 0.59 -1.3
986,034 + CCNA_00905 0.59 +0.1
986,037 - CCNA_00905 0.59 +0.4
986,037 - CCNA_00905 0.59 +0.2
986,037 - CCNA_00905 0.59 -0.4
986,044 + CCNA_00905 0.60 -0.4
986,052 - CCNA_00905 0.61 -0.1
986,121 - CCNA_00905 0.69 -0.2
986,128 + CCNA_00905 0.70 -0.5
986,136 - CCNA_00905 0.71 -0.2
986,221 + CCNA_00905 0.80 -0.2
986,229 - CCNA_00905 0.81 +0.2
986,310 - +0.6
986,380 - +0.4
986,391 + -0.5
986,399 - +0.1
986,399 - -1.2
986,419 + +1.0
986,426 + +0.1
986,427 - +0.3
986,464 + -0.1
986,471 - -0.4
986,488 - +0.6
986,527 - +0.0
986,542 - +0.1
986,561 + CCNA_00906 0.10 +0.6
986,570 - CCNA_00906 0.11 +0.0
986,570 - CCNA_00906 0.11 +0.7
986,601 + CCNA_00906 0.15 -0.3
986,601 + CCNA_00906 0.15 +0.1
986,609 - CCNA_00906 0.16 +0.5
986,610 - CCNA_00906 0.16 +0.4
986,674 + CCNA_00906 0.23 +1.0
986,697 - CCNA_00906 0.25 -0.0
986,769 - CCNA_00906 0.33 +0.1
986,823 - CCNA_00906 0.39 -0.2
986,832 + CCNA_00906 0.40 -1.1
986,899 - CCNA_00906 0.47 -0.2
986,905 + CCNA_00906 0.48 -0.5
986,976 - CCNA_00906 0.56 -2.2
986,980 - CCNA_00906 0.56 -0.9
986,980 - CCNA_00906 0.56 +0.4
986,980 - CCNA_00906 0.56 +0.3
987,001 + CCNA_00906 0.58 +0.0
987,009 - CCNA_00906 0.59 +0.4
987,009 - CCNA_00906 0.59 -0.6
987,022 + CCNA_00906 0.61 -1.2
987,022 + CCNA_00906 0.61 -0.2
987,047 - CCNA_00906 0.63 -0.7
987,074 + CCNA_00906 0.66 +0.2
987,075 + CCNA_00906 0.67 -1.6
987,082 - CCNA_00906 0.67 -1.4
987,087 + CCNA_00906 0.68 +0.4
987,087 + CCNA_00906 0.68 -0.6
987,118 + CCNA_00906 0.71 +0.4
987,130 - CCNA_00906 0.73 +0.5
987,135 - CCNA_00906 0.73 +0.7
987,135 - CCNA_00906 0.73 -0.3
987,135 - CCNA_00906 0.73 +0.0
987,142 + CCNA_00906 0.74 -0.2
987,149 + CCNA_00906 0.75 +0.3
987,152 - CCNA_00906 0.75 +0.3
987,152 - CCNA_00906 0.75 -0.4
987,164 + CCNA_00906 0.76 -0.4
987,231 - CCNA_00906 0.84 -0.2
987,231 - CCNA_00906 0.84 +0.4
987,231 - CCNA_00906 0.84 -0.5
987,259 + CCNA_00906 0.87 -0.2
987,259 + CCNA_00906 0.87 -0.5
987,261 - CCNA_00906 0.87 -0.7
987,267 - CCNA_00906 0.88 +0.1
987,267 - CCNA_00906 0.88 +0.1
987,267 - CCNA_00906 0.88 -0.8
987,267 - CCNA_00906 0.88 -0.2
987,269 + CCNA_00906 0.88 -0.8
987,269 - CCNA_00906 0.88 +0.0
987,275 + CCNA_00906 0.88 -0.7
987,282 - CCNA_00906 0.89 +0.7
987,305 + +0.2
987,305 + -1.3
987,311 + -0.6
987,339 + +1.0

Or see this region's nucleotide sequence