Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00874

Experiment: PYE with Dimethyl Sulfoxide 0.4 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00872 and CCNA_00873 are separated by 28 nucleotidesCCNA_00873 and CCNA_00874 overlap by 2 nucleotidesCCNA_00874 and CCNA_00875 are separated by 6 nucleotidesCCNA_00875 and CCNA_00876 overlap by 22 nucleotidesCCNA_00876 and CCNA_00877 are separated by 31 nucleotides CCNA_00872: CCNA_00872 - glutaredoxin, at 951,754 to 952,008 _00872 CCNA_00873: CCNA_00873 - amidophosphoribosyltransferase family protein, at 952,037 to 952,834 _00873 CCNA_00874: CCNA_00874 - biotin synthesis protein bioC, at 952,833 to 953,744 _00874 CCNA_00875: CCNA_00875 - Flp/Fap pilin component protein, at 953,751 to 953,924 _00875 CCNA_00876: CCNA_00876 - 7,8-dihydro-8-oxoguanine-triphosphatase, at 953,903 to 954,307 _00876 CCNA_00877: CCNA_00877 - hypothetical protein, at 954,339 to 954,947 _00877 Position (kb) 952 953 954Strain fitness (log2 ratio) -2 -1 0 1 2 3at 951.841 kb on + strand, within CCNA_00872at 951.841 kb on + strand, within CCNA_00872at 951.849 kb on - strand, within CCNA_00872at 951.871 kb on - strand, within CCNA_00872at 951.900 kb on - strand, within CCNA_00872at 951.905 kb on - strand, within CCNA_00872at 951.986 kb on + strandat 951.992 kb on + strandat 951.993 kb on - strandat 951.998 kb on + strandat 952.000 kb on - strandat 952.000 kb on - strandat 952.005 kb on - strandat 952.034 kb on + strandat 952.044 kb on - strandat 952.044 kb on - strandat 952.046 kb on - strandat 952.067 kb on - strandat 952.067 kb on - strandat 952.084 kb on + strandat 952.087 kb on - strandat 952.127 kb on + strand, within CCNA_00873at 952.148 kb on + strand, within CCNA_00873at 952.148 kb on + strand, within CCNA_00873at 952.148 kb on + strand, within CCNA_00873at 952.166 kb on - strand, within CCNA_00873at 952.205 kb on + strand, within CCNA_00873at 952.222 kb on - strand, within CCNA_00873at 952.248 kb on + strand, within CCNA_00873at 952.288 kb on + strand, within CCNA_00873at 952.297 kb on - strand, within CCNA_00873at 952.376 kb on + strand, within CCNA_00873at 952.378 kb on + strand, within CCNA_00873at 952.378 kb on + strand, within CCNA_00873at 952.384 kb on + strand, within CCNA_00873at 952.399 kb on - strand, within CCNA_00873at 952.424 kb on - strand, within CCNA_00873at 952.429 kb on - strand, within CCNA_00873at 952.463 kb on - strand, within CCNA_00873at 952.504 kb on + strand, within CCNA_00873at 952.504 kb on + strand, within CCNA_00873at 952.504 kb on + strand, within CCNA_00873at 952.512 kb on - strand, within CCNA_00873at 952.512 kb on - strand, within CCNA_00873at 952.512 kb on - strand, within CCNA_00873at 952.550 kb on - strand, within CCNA_00873at 952.555 kb on - strand, within CCNA_00873at 952.555 kb on - strand, within CCNA_00873at 952.559 kb on + strand, within CCNA_00873at 952.560 kb on + strand, within CCNA_00873at 952.560 kb on + strand, within CCNA_00873at 952.560 kb on + strand, within CCNA_00873at 952.560 kb on + strand, within CCNA_00873at 952.560 kb on + strand, within CCNA_00873at 952.560 kb on + strand, within CCNA_00873at 952.567 kb on - strand, within CCNA_00873at 952.568 kb on - strand, within CCNA_00873at 952.568 kb on - strand, within CCNA_00873at 952.568 kb on - strand, within CCNA_00873at 952.568 kb on - strand, within CCNA_00873at 952.568 kb on - strand, within CCNA_00873at 952.568 kb on - strand, within CCNA_00873at 952.568 kb on - strand, within CCNA_00873at 952.572 kb on + strand, within CCNA_00873at 952.579 kb on + strand, within CCNA_00873at 952.579 kb on - strand, within CCNA_00873at 952.584 kb on + strand, within CCNA_00873at 952.608 kb on + strand, within CCNA_00873at 952.608 kb on + strand, within CCNA_00873at 952.619 kb on + strand, within CCNA_00873at 952.621 kb on - strand, within CCNA_00873at 952.621 kb on - strand, within CCNA_00873at 952.671 kb on - strand, within CCNA_00873at 952.694 kb on + strand, within CCNA_00873at 952.699 kb on + strand, within CCNA_00873at 952.699 kb on + strand, within CCNA_00873at 952.702 kb on - strand, within CCNA_00873at 952.707 kb on - strand, within CCNA_00873at 953.640 kb on + strand, within CCNA_00874at 953.677 kb on + strandat 953.796 kb on - strand, within CCNA_00875at 953.815 kb on - strand, within CCNA_00875at 953.823 kb on + strand, within CCNA_00875at 953.823 kb on + strand, within CCNA_00875at 953.823 kb on + strand, within CCNA_00875at 953.823 kb on + strand, within CCNA_00875at 953.823 kb on + strand, within CCNA_00875at 953.826 kb on - strand, within CCNA_00875at 953.828 kb on + strand, within CCNA_00875at 953.831 kb on - strand, within CCNA_00875at 953.836 kb on - strand, within CCNA_00875at 953.875 kb on + strand, within CCNA_00875at 953.888 kb on - strand, within CCNA_00875at 953.985 kb on - strand, within CCNA_00876at 953.987 kb on + strand, within CCNA_00876at 953.996 kb on + strand, within CCNA_00876at 954.004 kb on - strand, within CCNA_00876at 954.013 kb on + strand, within CCNA_00876at 954.075 kb on - strand, within CCNA_00876at 954.097 kb on + strand, within CCNA_00876at 954.115 kb on - strand, within CCNA_00876at 954.115 kb on - strand, within CCNA_00876at 954.115 kb on - strand, within CCNA_00876at 954.115 kb on - strand, within CCNA_00876at 954.160 kb on + strand, within CCNA_00876at 954.160 kb on + strand, within CCNA_00876at 954.168 kb on - strand, within CCNA_00876at 954.183 kb on + strand, within CCNA_00876at 954.219 kb on + strand, within CCNA_00876at 954.242 kb on + strand, within CCNA_00876at 954.250 kb on - strand, within CCNA_00876at 954.297 kb on + strandat 954.337 kb on + strandat 954.337 kb on + strandat 954.337 kb on + strandat 954.337 kb on + strandat 954.337 kb on + strandat 954.337 kb on + strandat 954.344 kb on + strandat 954.345 kb on - strandat 954.345 kb on - strandat 954.345 kb on - strandat 954.357 kb on + strandat 954.362 kb on + strandat 954.362 kb on + strandat 954.362 kb on + strandat 954.362 kb on + strandat 954.362 kb on + strandat 954.370 kb on - strandat 954.370 kb on - strandat 954.370 kb on - strandat 954.370 kb on - strandat 954.370 kb on - strandat 954.370 kb on - strandat 954.372 kb on + strandat 954.372 kb on + strandat 954.403 kb on - strand, within CCNA_00877at 954.439 kb on + strand, within CCNA_00877at 954.439 kb on + strand, within CCNA_00877at 954.439 kb on + strand, within CCNA_00877at 954.440 kb on + strand, within CCNA_00877at 954.441 kb on - strand, within CCNA_00877at 954.442 kb on - strand, within CCNA_00877at 954.447 kb on - strand, within CCNA_00877at 954.447 kb on - strand, within CCNA_00877at 954.447 kb on - strand, within CCNA_00877at 954.448 kb on - strand, within CCNA_00877at 954.448 kb on - strand, within CCNA_00877at 954.467 kb on - strand, within CCNA_00877at 954.504 kb on - strand, within CCNA_00877at 954.515 kb on - strand, within CCNA_00877at 954.560 kb on + strand, within CCNA_00877at 954.568 kb on - strand, within CCNA_00877at 954.580 kb on + strand, within CCNA_00877at 954.580 kb on + strand, within CCNA_00877at 954.586 kb on + strand, within CCNA_00877at 954.586 kb on + strand, within CCNA_00877at 954.588 kb on - strand, within CCNA_00877at 954.588 kb on - strand, within CCNA_00877at 954.606 kb on + strand, within CCNA_00877at 954.655 kb on + strand, within CCNA_00877at 954.663 kb on - strand, within CCNA_00877at 954.688 kb on + strand, within CCNA_00877at 954.690 kb on + strand, within CCNA_00877at 954.695 kb on + strand, within CCNA_00877at 954.713 kb on - strand, within CCNA_00877at 954.715 kb on + strand, within CCNA_00877at 954.715 kb on + strand, within CCNA_00877at 954.716 kb on + strand, within CCNA_00877at 954.723 kb on - strand, within CCNA_00877at 954.723 kb on - strand, within CCNA_00877at 954.744 kb on - strand, within CCNA_00877

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 %
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951,841 + CCNA_00872 0.34 -0.4
951,841 + CCNA_00872 0.34 -0.4
951,849 - CCNA_00872 0.37 -0.3
951,871 - CCNA_00872 0.46 +0.8
951,900 - CCNA_00872 0.57 -0.3
951,905 - CCNA_00872 0.59 +0.1
951,986 + +1.5
951,992 + -0.9
951,993 - -1.7
951,998 + +0.3
952,000 - -0.4
952,000 - -0.6
952,005 - -0.0
952,034 + -0.7
952,044 - +0.1
952,044 - -0.5
952,046 - -0.1
952,067 - -0.1
952,067 - -0.2
952,084 + +1.0
952,087 - -1.3
952,127 + CCNA_00873 0.11 -0.0
952,148 + CCNA_00873 0.14 -0.7
952,148 + CCNA_00873 0.14 -0.8
952,148 + CCNA_00873 0.14 +0.5
952,166 - CCNA_00873 0.16 -0.3
952,205 + CCNA_00873 0.21 -0.5
952,222 - CCNA_00873 0.23 +0.2
952,248 + CCNA_00873 0.26 -0.1
952,288 + CCNA_00873 0.31 +0.1
952,297 - CCNA_00873 0.33 -1.6
952,376 + CCNA_00873 0.42 +1.2
952,378 + CCNA_00873 0.43 -1.9
952,378 + CCNA_00873 0.43 -0.9
952,384 + CCNA_00873 0.43 -0.9
952,399 - CCNA_00873 0.45 -1.5
952,424 - CCNA_00873 0.48 +0.8
952,429 - CCNA_00873 0.49 -0.2
952,463 - CCNA_00873 0.53 +0.1
952,504 + CCNA_00873 0.59 +0.5
952,504 + CCNA_00873 0.59 +0.3
952,504 + CCNA_00873 0.59 -0.1
952,512 - CCNA_00873 0.60 +0.3
952,512 - CCNA_00873 0.60 +0.6
952,512 - CCNA_00873 0.60 +0.0
952,550 - CCNA_00873 0.64 +0.5
952,555 - CCNA_00873 0.65 -1.3
952,555 - CCNA_00873 0.65 +0.2
952,559 + CCNA_00873 0.65 +1.1
952,560 + CCNA_00873 0.66 -1.1
952,560 + CCNA_00873 0.66 -0.6
952,560 + CCNA_00873 0.66 -0.9
952,560 + CCNA_00873 0.66 -0.4
952,560 + CCNA_00873 0.66 +0.8
952,560 + CCNA_00873 0.66 -0.1
952,567 - CCNA_00873 0.66 +0.6
952,568 - CCNA_00873 0.67 +1.6
952,568 - CCNA_00873 0.67 -1.0
952,568 - CCNA_00873 0.67 +3.1
952,568 - CCNA_00873 0.67 +0.4
952,568 - CCNA_00873 0.67 +0.2
952,568 - CCNA_00873 0.67 -0.2
952,568 - CCNA_00873 0.67 -0.1
952,572 + CCNA_00873 0.67 -0.8
952,579 + CCNA_00873 0.68 +0.5
952,579 - CCNA_00873 0.68 +0.9
952,584 + CCNA_00873 0.69 -0.2
952,608 + CCNA_00873 0.72 -1.0
952,608 + CCNA_00873 0.72 +0.0
952,619 + CCNA_00873 0.73 +1.8
952,621 - CCNA_00873 0.73 +0.3
952,621 - CCNA_00873 0.73 -0.7
952,671 - CCNA_00873 0.79 -2.3
952,694 + CCNA_00873 0.82 +0.6
952,699 + CCNA_00873 0.83 -0.1
952,699 + CCNA_00873 0.83 -0.0
952,702 - CCNA_00873 0.83 -0.6
952,707 - CCNA_00873 0.84 +0.0
953,640 + CCNA_00874 0.88 +0.4
953,677 + -0.1
953,796 - CCNA_00875 0.26 +0.6
953,815 - CCNA_00875 0.37 +0.2
953,823 + CCNA_00875 0.41 -0.4
953,823 + CCNA_00875 0.41 -0.2
953,823 + CCNA_00875 0.41 -0.4
953,823 + CCNA_00875 0.41 -0.2
953,823 + CCNA_00875 0.41 -0.0
953,826 - CCNA_00875 0.43 +0.4
953,828 + CCNA_00875 0.44 -1.1
953,831 - CCNA_00875 0.46 +0.1
953,836 - CCNA_00875 0.49 +0.0
953,875 + CCNA_00875 0.71 -0.4
953,888 - CCNA_00875 0.79 +0.1
953,985 - CCNA_00876 0.20 +0.2
953,987 + CCNA_00876 0.21 -0.1
953,996 + CCNA_00876 0.23 +0.5
954,004 - CCNA_00876 0.25 -0.3
954,013 + CCNA_00876 0.27 +0.1
954,075 - CCNA_00876 0.42 -0.1
954,097 + CCNA_00876 0.48 +0.5
954,115 - CCNA_00876 0.52 +0.0
954,115 - CCNA_00876 0.52 -0.4
954,115 - CCNA_00876 0.52 -1.3
954,115 - CCNA_00876 0.52 +0.1
954,160 + CCNA_00876 0.63 +0.8
954,160 + CCNA_00876 0.63 -0.8
954,168 - CCNA_00876 0.65 +1.0
954,183 + CCNA_00876 0.69 -0.7
954,219 + CCNA_00876 0.78 -0.0
954,242 + CCNA_00876 0.84 +0.3
954,250 - CCNA_00876 0.86 +0.2
954,297 + -0.9
954,337 + +0.2
954,337 + -0.5
954,337 + -0.4
954,337 + -0.1
954,337 + -0.7
954,337 + +0.9
954,344 + -0.2
954,345 - +0.7
954,345 - +0.5
954,345 - +0.6
954,357 + +0.2
954,362 + -0.9
954,362 + -0.7
954,362 + -1.8
954,362 + -0.2
954,362 + +0.0
954,370 - +1.0
954,370 - -0.7
954,370 - +0.1
954,370 - -1.1
954,370 - -0.5
954,370 - -0.6
954,372 + +0.6
954,372 + +0.8
954,403 - CCNA_00877 0.11 +0.4
954,439 + CCNA_00877 0.16 +1.5
954,439 + CCNA_00877 0.16 -1.4
954,439 + CCNA_00877 0.16 -0.4
954,440 + CCNA_00877 0.17 -0.8
954,441 - CCNA_00877 0.17 -0.2
954,442 - CCNA_00877 0.17 -1.9
954,447 - CCNA_00877 0.18 -0.6
954,447 - CCNA_00877 0.18 +0.0
954,447 - CCNA_00877 0.18 -0.4
954,448 - CCNA_00877 0.18 -0.5
954,448 - CCNA_00877 0.18 -0.3
954,467 - CCNA_00877 0.21 +0.5
954,504 - CCNA_00877 0.27 -0.6
954,515 - CCNA_00877 0.29 -0.1
954,560 + CCNA_00877 0.36 +0.0
954,568 - CCNA_00877 0.38 +0.1
954,580 + CCNA_00877 0.40 -0.5
954,580 + CCNA_00877 0.40 +0.9
954,586 + CCNA_00877 0.41 +0.2
954,586 + CCNA_00877 0.41 -1.5
954,588 - CCNA_00877 0.41 -0.0
954,588 - CCNA_00877 0.41 -0.1
954,606 + CCNA_00877 0.44 -1.3
954,655 + CCNA_00877 0.52 -0.6
954,663 - CCNA_00877 0.53 +2.9
954,688 + CCNA_00877 0.57 -0.6
954,690 + CCNA_00877 0.58 -0.5
954,695 + CCNA_00877 0.58 +1.0
954,713 - CCNA_00877 0.61 +1.3
954,715 + CCNA_00877 0.62 +0.2
954,715 + CCNA_00877 0.62 +0.1
954,716 + CCNA_00877 0.62 +0.0
954,723 - CCNA_00877 0.63 -0.8
954,723 - CCNA_00877 0.63 +0.4
954,744 - CCNA_00877 0.67 -0.8

Or see this region's nucleotide sequence