Experiment: PYE with Dimethyl Sulfoxide 0.4 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00472 and CCNA_00473 are separated by 104 nucleotides CCNA_00473 and CCNA_00474 overlap by 1 nucleotides
CCNA_00472: CCNA_00472 - GDP-mannose 4,6 dehydratase, at 487,093 to 488,169
_00472
CCNA_00473: CCNA_00473 - hypothetical protein, at 488,274 to 488,768
_00473
CCNA_00474: CCNA_00474 - DNA relaxase/conjugal transfer nickase-helicase trwC, at 488,768 to 491,578
_00474
Position (kb) 488
489 Strain fitness (log2 ratio) -2
-1
0
1
2 at 487.309 kb on - strand, within CCNA_00472 at 487.323 kb on + strand, within CCNA_00472 at 487.407 kb on - strand, within CCNA_00472 at 487.407 kb on - strand, within CCNA_00472 at 487.442 kb on - strand, within CCNA_00472 at 487.495 kb on - strand, within CCNA_00472 at 487.495 kb on - strand, within CCNA_00472 at 487.503 kb on + strand, within CCNA_00472 at 487.510 kb on - strand, within CCNA_00472 at 487.513 kb on + strand, within CCNA_00472 at 487.516 kb on - strand, within CCNA_00472 at 487.523 kb on - strand, within CCNA_00472 at 487.528 kb on + strand, within CCNA_00472 at 487.561 kb on - strand, within CCNA_00472 at 487.603 kb on - strand, within CCNA_00472 at 487.635 kb on - strand, within CCNA_00472 at 487.653 kb on + strand, within CCNA_00472 at 487.663 kb on - strand, within CCNA_00472 at 487.664 kb on + strand, within CCNA_00472 at 487.664 kb on + strand, within CCNA_00472 at 487.664 kb on + strand, within CCNA_00472 at 487.664 kb on + strand, within CCNA_00472 at 487.664 kb on + strand, within CCNA_00472 at 487.664 kb on + strand, within CCNA_00472 at 487.664 kb on + strand, within CCNA_00472 at 487.672 kb on - strand, within CCNA_00472 at 487.672 kb on - strand, within CCNA_00472 at 487.672 kb on - strand, within CCNA_00472 at 487.672 kb on - strand, within CCNA_00472 at 487.682 kb on + strand, within CCNA_00472 at 487.683 kb on + strand, within CCNA_00472 at 487.715 kb on - strand, within CCNA_00472 at 487.728 kb on + strand, within CCNA_00472 at 487.729 kb on + strand, within CCNA_00472 at 487.739 kb on + strand, within CCNA_00472 at 487.739 kb on + strand, within CCNA_00472 at 487.739 kb on + strand, within CCNA_00472 at 487.747 kb on - strand, within CCNA_00472 at 487.749 kb on + strand, within CCNA_00472 at 487.749 kb on + strand, within CCNA_00472 at 487.752 kb on - strand, within CCNA_00472 at 487.765 kb on - strand, within CCNA_00472 at 487.805 kb on - strand, within CCNA_00472 at 487.808 kb on + strand, within CCNA_00472 at 487.829 kb on + strand, within CCNA_00472 at 487.837 kb on - strand, within CCNA_00472 at 487.871 kb on - strand, within CCNA_00472 at 487.875 kb on + strand, within CCNA_00472 at 487.881 kb on - strand, within CCNA_00472 at 487.893 kb on - strand, within CCNA_00472 at 487.907 kb on - strand, within CCNA_00472 at 487.975 kb on - strand, within CCNA_00472 at 487.989 kb on + strand, within CCNA_00472 at 487.997 kb on - strand, within CCNA_00472 at 488.031 kb on - strand, within CCNA_00472 at 488.033 kb on + strand, within CCNA_00472 at 488.041 kb on - strand, within CCNA_00472 at 488.041 kb on - strand, within CCNA_00472 at 488.055 kb on + strand, within CCNA_00472 at 488.055 kb on + strand, within CCNA_00472 at 488.063 kb on - strand at 488.063 kb on - strand at 488.063 kb on - strand at 488.063 kb on - strand at 488.070 kb on + strand at 488.070 kb on + strand at 488.070 kb on + strand at 488.070 kb on + strand at 488.070 kb on + strand at 488.072 kb on + strand at 488.072 kb on + strand at 488.072 kb on + strand at 488.072 kb on + strand at 488.075 kb on - strand at 488.078 kb on + strand at 488.078 kb on - strand at 488.078 kb on - strand at 488.078 kb on - strand at 488.080 kb on - strand at 488.080 kb on - strand at 488.080 kb on - strand at 488.102 kb on - strand at 488.102 kb on - strand at 488.129 kb on + strand at 488.129 kb on + strand at 488.129 kb on + strand at 488.135 kb on - strand at 488.137 kb on - strand at 488.139 kb on + strand at 488.139 kb on + strand at 488.179 kb on + strand at 488.181 kb on - strand at 488.218 kb on + strand at 488.226 kb on - strand at 488.228 kb on + strand at 488.243 kb on - strand at 488.281 kb on - strand at 488.299 kb on + strand at 488.308 kb on - strand at 488.318 kb on - strand at 488.401 kb on + strand, within CCNA_00473 at 488.401 kb on + strand, within CCNA_00473 at 488.402 kb on + strand, within CCNA_00473 at 488.409 kb on - strand, within CCNA_00473 at 488.409 kb on - strand, within CCNA_00473 at 488.409 kb on - strand, within CCNA_00473 at 488.504 kb on + strand, within CCNA_00473 at 488.512 kb on + strand, within CCNA_00473 at 488.535 kb on - strand, within CCNA_00473 at 488.609 kb on + strand, within CCNA_00473 at 488.609 kb on - strand, within CCNA_00473 at 488.609 kb on - strand, within CCNA_00473 at 488.635 kb on - strand, within CCNA_00473 at 488.682 kb on + strand, within CCNA_00473 at 488.688 kb on + strand, within CCNA_00473 at 488.722 kb on - strand at 488.768 kb on + strand at 488.768 kb on + strand at 488.768 kb on + strand at 488.768 kb on + strand at 488.776 kb on - strand at 488.776 kb on - strand at 488.776 kb on - strand at 488.793 kb on - strand at 488.825 kb on - strand at 488.826 kb on + strand at 488.834 kb on + strand at 488.851 kb on + strand at 488.851 kb on + strand at 488.859 kb on - strand at 488.859 kb on - strand at 488.867 kb on - strand at 488.869 kb on + strand at 488.869 kb on + strand at 488.879 kb on + strand at 488.887 kb on - strand at 488.931 kb on + strand at 488.950 kb on + strand at 488.950 kb on + strand at 488.958 kb on - strand at 488.962 kb on + strand at 488.970 kb on - strand at 489.007 kb on - strand at 489.007 kb on - strand at 489.007 kb on - strand at 489.026 kb on - strand at 489.046 kb on - strand at 489.058 kb on + strand, within CCNA_00474 at 489.058 kb on + strand, within CCNA_00474 at 489.062 kb on + strand, within CCNA_00474 at 489.064 kb on + strand, within CCNA_00474 at 489.064 kb on + strand, within CCNA_00474 at 489.064 kb on + strand, within CCNA_00474 at 489.070 kb on - strand, within CCNA_00474 at 489.072 kb on - strand, within CCNA_00474 at 489.072 kb on - strand, within CCNA_00474 at 489.077 kb on + strand, within CCNA_00474 at 489.098 kb on + strand, within CCNA_00474 at 489.098 kb on + strand, within CCNA_00474 at 489.098 kb on + strand, within CCNA_00474 at 489.100 kb on + strand, within CCNA_00474 at 489.106 kb on - strand, within CCNA_00474 at 489.120 kb on + strand, within CCNA_00474 at 489.169 kb on - strand, within CCNA_00474 at 489.169 kb on - strand, within CCNA_00474 at 489.174 kb on - strand, within CCNA_00474 at 489.184 kb on - strand, within CCNA_00474 at 489.211 kb on + strand, within CCNA_00474 at 489.219 kb on - strand, within CCNA_00474 at 489.234 kb on - strand, within CCNA_00474 at 489.235 kb on + strand, within CCNA_00474 at 489.243 kb on - strand, within CCNA_00474 at 489.243 kb on - strand, within CCNA_00474 at 489.248 kb on - strand, within CCNA_00474 at 489.278 kb on - strand, within CCNA_00474 at 489.301 kb on - strand, within CCNA_00474 at 489.314 kb on + strand, within CCNA_00474 at 489.322 kb on - strand, within CCNA_00474 at 489.324 kb on + strand, within CCNA_00474 at 489.332 kb on - strand, within CCNA_00474 at 489.347 kb on - strand, within CCNA_00474 at 489.365 kb on + strand, within CCNA_00474 at 489.373 kb on - strand, within CCNA_00474 at 489.408 kb on - strand, within CCNA_00474 at 489.425 kb on - strand, within CCNA_00474 at 489.431 kb on - strand, within CCNA_00474 at 489.434 kb on + strand, within CCNA_00474 at 489.442 kb on - strand, within CCNA_00474 at 489.464 kb on + strand, within CCNA_00474 at 489.474 kb on + strand, within CCNA_00474 at 489.474 kb on + strand, within CCNA_00474 at 489.479 kb on + strand, within CCNA_00474 at 489.482 kb on - strand, within CCNA_00474 at 489.482 kb on - strand, within CCNA_00474 at 489.482 kb on - strand, within CCNA_00474 at 489.482 kb on - strand, within CCNA_00474 at 489.482 kb on - strand, within CCNA_00474 at 489.512 kb on + strand, within CCNA_00474 at 489.538 kb on - strand, within CCNA_00474 at 489.557 kb on + strand, within CCNA_00474 at 489.560 kb on - strand, within CCNA_00474 at 489.560 kb on - strand, within CCNA_00474 at 489.580 kb on - strand, within CCNA_00474 at 489.580 kb on - strand, within CCNA_00474 at 489.582 kb on + strand, within CCNA_00474 at 489.582 kb on - strand, within CCNA_00474 at 489.584 kb on + strand, within CCNA_00474 at 489.590 kb on - strand, within CCNA_00474 at 489.590 kb on - strand, within CCNA_00474 at 489.590 kb on - strand, within CCNA_00474 at 489.616 kb on - strand, within CCNA_00474 at 489.691 kb on + strand, within CCNA_00474 at 489.732 kb on + strand, within CCNA_00474 at 489.732 kb on + strand, within CCNA_00474 at 489.740 kb on - strand, within CCNA_00474 at 489.758 kb on - strand, within CCNA_00474 at 489.768 kb on + strand, within CCNA_00474 at 489.768 kb on + strand, within CCNA_00474
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 % remove 487,309 - CCNA_00472 0.20 +0.2 487,323 + CCNA_00472 0.21 -0.4 487,407 - CCNA_00472 0.29 +0.4 487,407 - CCNA_00472 0.29 +0.3 487,442 - CCNA_00472 0.32 +0.2 487,495 - CCNA_00472 0.37 +0.2 487,495 - CCNA_00472 0.37 -0.1 487,503 + CCNA_00472 0.38 +0.3 487,510 - CCNA_00472 0.39 +0.8 487,513 + CCNA_00472 0.39 -0.7 487,516 - CCNA_00472 0.39 +0.2 487,523 - CCNA_00472 0.40 -0.2 487,528 + CCNA_00472 0.40 -0.5 487,561 - CCNA_00472 0.43 +0.4 487,603 - CCNA_00472 0.47 +0.7 487,635 - CCNA_00472 0.50 +0.6 487,653 + CCNA_00472 0.52 +0.3 487,663 - CCNA_00472 0.53 +0.4 487,664 + CCNA_00472 0.53 -0.1 487,664 + CCNA_00472 0.53 -0.3 487,664 + CCNA_00472 0.53 +0.0 487,664 + CCNA_00472 0.53 -0.9 487,664 + CCNA_00472 0.53 -1.0 487,664 + CCNA_00472 0.53 +0.5 487,664 + CCNA_00472 0.53 +1.6 487,672 - CCNA_00472 0.54 -0.3 487,672 - CCNA_00472 0.54 +0.6 487,672 - CCNA_00472 0.54 +0.2 487,672 - CCNA_00472 0.54 -0.0 487,682 + CCNA_00472 0.55 +2.7 487,683 + CCNA_00472 0.55 +0.1 487,715 - CCNA_00472 0.58 +0.9 487,728 + CCNA_00472 0.59 +0.2 487,729 + CCNA_00472 0.59 -0.3 487,739 + CCNA_00472 0.60 -0.4 487,739 + CCNA_00472 0.60 +0.0 487,739 + CCNA_00472 0.60 +1.3 487,747 - CCNA_00472 0.61 +0.0 487,749 + CCNA_00472 0.61 +0.2 487,749 + CCNA_00472 0.61 +0.1 487,752 - CCNA_00472 0.61 +0.6 487,765 - CCNA_00472 0.62 +1.5 487,805 - CCNA_00472 0.66 +0.4 487,808 + CCNA_00472 0.66 -1.1 487,829 + CCNA_00472 0.68 -1.1 487,837 - CCNA_00472 0.69 -0.1 487,871 - CCNA_00472 0.72 +0.4 487,875 + CCNA_00472 0.73 +0.3 487,881 - CCNA_00472 0.73 +0.3 487,893 - CCNA_00472 0.74 +0.7 487,907 - CCNA_00472 0.76 +0.4 487,975 - CCNA_00472 0.82 +0.3 487,989 + CCNA_00472 0.83 -0.4 487,997 - CCNA_00472 0.84 +0.1 488,031 - CCNA_00472 0.87 +0.7 488,033 + CCNA_00472 0.87 +1.3 488,041 - CCNA_00472 0.88 +0.4 488,041 - CCNA_00472 0.88 -0.9 488,055 + CCNA_00472 0.89 -1.1 488,055 + CCNA_00472 0.89 -0.1 488,063 - +0.3 488,063 - -0.0 488,063 - +0.1 488,063 - +0.8 488,070 + +0.1 488,070 + -1.4 488,070 + +0.3 488,070 + +0.3 488,070 + -0.8 488,072 + -1.5 488,072 + -0.4 488,072 + +0.1 488,072 + -1.7 488,075 - +0.3 488,078 + -0.6 488,078 - -0.2 488,078 - -0.4 488,078 - +1.7 488,080 - +0.1 488,080 - +0.2 488,080 - +0.2 488,102 - +0.0 488,102 - -1.2 488,129 + +0.4 488,129 + +1.7 488,129 + -0.4 488,135 - -0.6 488,137 - +0.3 488,139 + -0.2 488,139 + -0.7 488,179 + -0.1 488,181 - +0.2 488,218 + +1.0 488,226 - +0.0 488,228 + -0.3 488,243 - -0.3 488,281 - -1.2 488,299 + -0.7 488,308 - -0.9 488,318 - +0.0 488,401 + CCNA_00473 0.26 +0.7 488,401 + CCNA_00473 0.26 -0.5 488,402 + CCNA_00473 0.26 -0.2 488,409 - CCNA_00473 0.27 +0.2 488,409 - CCNA_00473 0.27 +0.5 488,409 - CCNA_00473 0.27 +1.1 488,504 + CCNA_00473 0.46 +0.3 488,512 + CCNA_00473 0.48 -0.1 488,535 - CCNA_00473 0.53 -0.7 488,609 + CCNA_00473 0.68 -0.2 488,609 - CCNA_00473 0.68 -1.2 488,609 - CCNA_00473 0.68 -0.7 488,635 - CCNA_00473 0.73 -0.9 488,682 + CCNA_00473 0.82 -0.2 488,688 + CCNA_00473 0.84 -0.5 488,722 - +0.0 488,768 + +0.2 488,768 + +0.3 488,768 + -1.7 488,768 + +0.4 488,776 - +0.1 488,776 - -0.5 488,776 - -0.6 488,793 - -0.3 488,825 - -1.2 488,826 + +0.1 488,834 + +0.7 488,851 + -0.6 488,851 + +0.4 488,859 - +0.6 488,859 - +0.1 488,867 - -0.1 488,869 + +0.3 488,869 + -0.1 488,879 + -0.0 488,887 - -0.6 488,931 + -0.0 488,950 + -0.1 488,950 + -0.3 488,958 - -0.2 488,962 + +0.7 488,970 - -0.3 489,007 - -0.4 489,007 - -0.4 489,007 - +0.1 489,026 - +0.1 489,046 - -1.0 489,058 + CCNA_00474 0.10 +0.2 489,058 + CCNA_00474 0.10 +0.9 489,062 + CCNA_00474 0.10 -1.1 489,064 + CCNA_00474 0.11 -0.3 489,064 + CCNA_00474 0.11 -0.4 489,064 + CCNA_00474 0.11 -0.1 489,070 - CCNA_00474 0.11 -0.1 489,072 - CCNA_00474 0.11 -0.1 489,072 - CCNA_00474 0.11 +0.5 489,077 + CCNA_00474 0.11 -0.1 489,098 + CCNA_00474 0.12 -0.7 489,098 + CCNA_00474 0.12 +0.4 489,098 + CCNA_00474 0.12 +1.2 489,100 + CCNA_00474 0.12 -0.2 489,106 - CCNA_00474 0.12 -0.6 489,120 + CCNA_00474 0.13 -0.1 489,169 - CCNA_00474 0.14 +0.6 489,169 - CCNA_00474 0.14 +0.3 489,174 - CCNA_00474 0.14 +0.3 489,184 - CCNA_00474 0.15 -0.0 489,211 + CCNA_00474 0.16 -0.3 489,219 - CCNA_00474 0.16 -0.8 489,234 - CCNA_00474 0.17 -0.5 489,235 + CCNA_00474 0.17 -0.1 489,243 - CCNA_00474 0.17 -0.1 489,243 - CCNA_00474 0.17 +0.1 489,248 - CCNA_00474 0.17 -2.0 489,278 - CCNA_00474 0.18 -0.2 489,301 - CCNA_00474 0.19 -1.1 489,314 + CCNA_00474 0.19 -0.6 489,322 - CCNA_00474 0.20 -1.9 489,324 + CCNA_00474 0.20 -0.1 489,332 - CCNA_00474 0.20 -0.1 489,347 - CCNA_00474 0.21 +0.3 489,365 + CCNA_00474 0.21 -0.7 489,373 - CCNA_00474 0.22 -0.6 489,408 - CCNA_00474 0.23 -0.7 489,425 - CCNA_00474 0.23 -0.2 489,431 - CCNA_00474 0.24 -0.2 489,434 + CCNA_00474 0.24 -0.7 489,442 - CCNA_00474 0.24 -0.3 489,464 + CCNA_00474 0.25 -0.5 489,474 + CCNA_00474 0.25 -0.1 489,474 + CCNA_00474 0.25 -0.4 489,479 + CCNA_00474 0.25 -0.1 489,482 - CCNA_00474 0.25 +0.0 489,482 - CCNA_00474 0.25 -1.8 489,482 - CCNA_00474 0.25 +0.7 489,482 - CCNA_00474 0.25 -0.6 489,482 - CCNA_00474 0.25 -0.6 489,512 + CCNA_00474 0.26 -0.3 489,538 - CCNA_00474 0.27 -1.4 489,557 + CCNA_00474 0.28 +0.5 489,560 - CCNA_00474 0.28 -0.7 489,560 - CCNA_00474 0.28 +0.7 489,580 - CCNA_00474 0.29 -0.2 489,580 - CCNA_00474 0.29 +0.5 489,582 + CCNA_00474 0.29 +0.3 489,582 - CCNA_00474 0.29 +0.1 489,584 + CCNA_00474 0.29 -0.1 489,590 - CCNA_00474 0.29 +0.1 489,590 - CCNA_00474 0.29 -0.0 489,590 - CCNA_00474 0.29 -0.2 489,616 - CCNA_00474 0.30 -1.0 489,691 + CCNA_00474 0.33 +0.7 489,732 + CCNA_00474 0.34 +0.2 489,732 + CCNA_00474 0.34 +0.3 489,740 - CCNA_00474 0.35 +0.8 489,758 - CCNA_00474 0.35 -0.9 489,768 + CCNA_00474 0.36 -0.3 489,768 + CCNA_00474 0.36 -0.3
Or see this region's nucleotide sequence